Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009896

Physical Location & Seq

Genomic Coordinates Forward (+)

35275395 .. 35276147

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1221000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTATCCGCGTAACCCTCAGCTTCTCCGGCTATATGGCCCAAAACCTAGCATCCTCAGCAAGCCTCCTCGCGGGGAACTGTCGAGGATTTCAGGAATGCTGGGTTCGGTCTTGGGTATTCGGATCCAACCAGAAGCCTGATCTCGACCCCGCCGTCCCCGTCCGCAATTACCAGACCCAATTTTCCCGCTCGAAGCATTCGACGGCTGCCGTTAAGCCCTTGCCGTCATTATACACCGCTCTCACCGAGGAGATTCTGGGCGAGAGCTGCAAGAGCCCGATCGTGATGGGCTTGATCTCGCTTCTGAAGTCAACGGCTATCGCCATCGGCGTCTCTTCGGCTCTGGCCTGTTTGGGGATTTCGCCGTTTAAATCCGGTTCGGTCATGCTTTTTTTTATATTTTTTTTACAGGTCTCAAAGTGGTTGCTCTGCAACGAGTCTGTCCCGGTGTCGATAATGAAGGAAGTGGATAAAGGTGGAGCGTTGTGTGTCGATGACATTGCAGAAGCCTCGCAGCTCTCCAAGAAAGACATTGGGAGGACCGGTTTTTTGTCGCGGTTGTTGAATTATTGCTCGGAAGACACTAAGGCTGTGTTCACTGCTGTTACAGTCAGTGTATTGTTTAAGTCTTTCTTGGCTAAGCCCCGATCAATTCCCTCAACTTCAATGTACCCTACTCTCGATGTCGGCGATCGGAGATTGGCGAGATCGCTTCGCGAATTGCGCAGCTCTACTTGGGGCAGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

251

Amino Acids

27.16

Weight (kDa)

9.32

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06870 AT2G30440
fragaria_vesca	FvH4_2g40680 FvH4_2g40680
malus_domestica	MD02G1187600.v1.1 MD06G1221000.v1.1 MD08G1040300.v1.1 MD15G1034800.v1.1
prunus_persica	Prupe.1G388900_v2.0.a1 Prupe.1G388900_v2.0.a1
pyrus_communis	pycom08g03250 pycom15g03200
rosa_chinensis	RchiOBHm_Chr6g0299931
rosa_multiflora	Rmu_co8498643.1_g000001 Rmu_sc0008233.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168260
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404700 Rh6BG413000 Rh6CG419100
rosa_wichuraiana	Rw6G035410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	728
AccBSI	CCGCTC	2 cut(s)	192, 242
AccII	CGCG	4 cut(s)	12, 74, 559, 720
AciI	CCGC	7 cut(s)	10, 74, 153, 166, 190, 240, 559
AclWI	GGATC	2 cut(s)	120, 133
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	674, 748
AfiI	CCNNNNNNNGG	2 cut(s)	73, 357
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	2 cut(s)	568, 669
AluBI	AGCT	4 cut(s)	24, 270, 520, 732
AluI	AGCT	4 cut(s)	24, 270, 520, 732
Alw26I	GTCTC	2 cut(s)	340, 421
AlwI	GGATC	2 cut(s)	120, 133
AoxI	GGCC	2 cut(s)	39, 348
ApeKI	GCWGC	4 cut(s)	209, 270, 517, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AsiGI	ACCGGT	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	2 cut(s)	40, 543
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	543
BamHI	GGATCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	588
BbvCI	CCTCAGC	2 cut(s)	20, 58
BbvI	GCAGC	4 cut(s)	196, 257, 529, 741
BccI	CCATC	2 cut(s)	283, 335
BceAI	ACGGC	6 cut(s)	140, 197, 211, 222, 333, 352
BcgI	CGANNNNNNTGC	4 cut(s)	485, 495, 519, 529
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	340, 421
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	210, 271, 518, 730
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	4 cut(s)	211, 272, 519, 731
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	2 cut(s)	40, 543
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	588
Bpu10I	CCTNAGC	2 cut(s)	20, 58
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	2 cut(s)	377, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 357
Bse118I	RCCGGY	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	73, 357
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	34, 72
BseRI	GAGGAG	2 cut(s)	59, 266
BseXI	GCAGC	4 cut(s)	196, 257, 529, 741
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	4 cut(s)	12, 74, 559, 720
Bsh1285I	CGRYCG	2 cut(s)	285, 697
BshFI	GGCC	2 cut(s)	41, 350
BshTI	ACCGGT	1 cut(s)	545
BsiEI	CGRYCG	2 cut(s)	285, 697
BsiSI	CCGG	4 cut(s)	30, 378, 449, 546
BslFI	GGGAC	2 cut(s)	143, 431
BslI	CCNNNNNNNGG	2 cut(s)	73, 357
BsmAI	GTCTC	2 cut(s)	340, 421
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	143, 431
BsmI	GAATGC	2 cut(s)	104, 199
BsnI	GGCC	2 cut(s)	41, 350
Bso31I	GGTCTC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
Bsp1720I	GCTNAGC	1 cut(s)	642
Bsp68I	TCGCGA	1 cut(s)	720
BspACI	CCGC	7 cut(s)	10, 74, 153, 166, 190, 240, 559
BspANI	GGCC	2 cut(s)	41, 350
BspCNI	CTCAG	2 cut(s)	33, 71
BspFNI	CGCG	4 cut(s)	12, 74, 559, 720
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	2 cut(s)	120, 133
BspTNI	GGTCTC	1 cut(s)	421
BsrBI	CCGCTC	2 cut(s)	192, 242
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	83, 613
Bst6I	CTCTTC	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	4 cut(s)	20, 58, 588, 642
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	4 cut(s)	12, 74, 559, 720
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	7 cut(s)	128, 145, 285, 300, 653, 697, 713
BstMAI	GTCTC	2 cut(s)	340, 421
BstMBI	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
BstMCI	CGRYCG	2 cut(s)	285, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 59, 270, 276, 726
BstSCI	CCNGG	1 cut(s)	447
BstUI	CGCG	4 cut(s)	12, 74, 559, 720
BstV1I	GCAGC	4 cut(s)	196, 257, 529, 741
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	41, 350
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	600, 622
BtuMI	TCGCGA	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	729
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	40, 543
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	673, 747
CspAI	ACCGGT	1 cut(s)	545
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	2 cut(s)	673, 747
DdeI	CTNAG	4 cut(s)	20, 58, 588, 642
DpnI	GATC	7 cut(s)	127, 144, 284, 299, 652, 696, 712
DpnII	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
DraI	TTTAAA	1 cut(s)	373
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	1 cut(s)	391
FaiI	YATR	6 cut(s)	36, 38, 235, 389, 401, 751
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	2 cut(s)	143, 431
FatI	CATG	1 cut(s)	387
FauI	CCCGC	3 cut(s)	67, 160, 197
Fnu4HI	GCNGC	4 cut(s)	210, 271, 518, 730
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	210, 271, 518, 730
FspBI	CTAG	1 cut(s)	50
FspI	TGCGCA	1 cut(s)	728
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	4 cut(s)	210, 271, 518, 730
GsaI	CCCAGC	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	41, 350
HapII	CCGG	4 cut(s)	30, 378, 449, 546
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	729
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	256, 440
HpaII	CCGG	4 cut(s)	30, 378, 449, 546
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	315, 600
Hpy188I	TCNGA	4 cut(s)	125, 309, 580, 699
Hpy188III	TCNNGA	5 cut(s)	95, 146, 286, 683, 719
Hpy8I	GTNNAC	2 cut(s)	315, 600
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	2 cut(s)	83, 613
HpyCH4V	TGCA	3 cut(s)	273, 435, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 59, 270, 276, 726
HpyF3I	CTNAG	4 cut(s)	20, 58, 588, 642
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	727
Kzo9I	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	4 cut(s)	196, 257, 529, 741
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	13, 607
MalI	GATC	7 cut(s)	127, 144, 284, 299, 652, 696, 712
MbiI	CCGCTC	2 cut(s)	192, 242
MboI	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
MboII	GAAGA	2 cut(s)	330, 593
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	5 cut(s)	169, 182, 568, 654, 722
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	9 cut(s)	29, 67, 77, 80, 80, 244, 523, 534, 670
MseI	TTAA	3 cut(s)	216, 372, 627
MspI	CCGG	4 cut(s)	30, 378, 449, 546
MspR9I	CCNGG	1 cut(s)	449
Mva1269I	GAATGC	2 cut(s)	104, 199
MvnI	CGCG	4 cut(s)	12, 74, 559, 720
MwoI	GCNNNNNNNGC	5 cut(s)	30, 59, 270, 276, 726
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	720
NsbI	TGCGCA	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	4 cut(s)	153, 200, 330, 690
PctI	GAATGC	2 cut(s)	104, 199
PfeI	GAWTC	1 cut(s)	256
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	211, 272, 519, 731
Ple19I	CGATCG	2 cut(s)	285, 697
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	40, 543
PsuI	RGATCY	1 cut(s)	125
PvuI	CGATCG	2 cut(s)	285, 697
RruI	TCGCGA	1 cut(s)	720
RsaI	GTAC	2 cut(s)	674, 748
RsaNI	GTAC	2 cut(s)	673, 747
SaqAI	TTAA	3 cut(s)	216, 372, 627
SatI	GCNGC	4 cut(s)	210, 271, 518, 730
Sau3AI	GATC	7 cut(s)	125, 142, 282, 297, 650, 694, 710
Sau96I	GGNCC	2 cut(s)	40, 543
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	7 cut(s)	26, 51, 272, 417, 481, 522, 734
SfaNI	GCATC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	543
Sse9I	AATT	5 cut(s)	169, 182, 568, 654, 722
SsiI	CCGC	7 cut(s)	10, 74, 153, 166, 190, 240, 559
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	83, 613
TaqI	TCGA	7 cut(s)	85, 147, 194, 203, 455, 495, 684
TaqII	GACCGA	2 cut(s)	99, 373
TasI	AATT	5 cut(s)	169, 182, 568, 654, 722
TatI	WGTACW	1 cut(s)	746
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	216, 372, 627
Tru9I	TTAA	3 cut(s)	216, 372, 627
TscAI	CASTG	2 cut(s)	607, 622
TseI	GCWGC	4 cut(s)	209, 270, 517, 729
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	2 cut(s)	607, 622
VpaK11BI	GGWCC	1 cut(s)	543
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.