Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009896

Physical Location & Seq

Genomic Coordinates Forward (+)

34749037 .. 34752054

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G388900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTATCCGCGTCACGCTAAGCTTCTCCGGCTATGTCGCCCAAAACCTAGCATCCTCGGCAAATCTCCGGGTCGGAAATTGCCGAGGATTTCACGAATGCTGGGTCAGGTCTCGGGTATTCGGATCAAACCAAAAGCCCGAATTCGACCCCTCCGTCCCCGTCCGCAAGTACCACCAGACCCAATTCTCCCGTTCGAAGCCGAGCTCGCTGGCCGCTAAGACTTTGCCGTCCTTGTACACAGCCCTCGCCGAAGAGATTGTCGGCGAGAGTTCCAAGAGCCCGATCGTCTTGGGCTTGATCTCGCTTCTGAAGTCAACGGCTTTCGTTGCGGGTGTCTCTTCAGCTCCGTCTGCTATGGGTATTTCGCCGTTCAAACCCGGTTCGATCATGCCTTTTTTACAGGTCTCCAAGTGGCTTCCCTGCAACGAGACTGTTCCGGTGTCTATATTGAAGGAAGTGGACAAAGGCGGAACCTTGTGTGTGGATGAGGTCGCTGAGGTCCCGCGGTTGACTAAAAAAGAATTGGGGAGGAGCGGTTTCTTATCGCGCTTGTTGAATTCTTGCTCGGAGGACGCTAAGGCTGTGTTCACTGCTGTCACTGTTAGTGTCTTGTTTAAGTCCTTCTTGGCCGAGCCCAGATCGATTCCCTCCACTTCTATGTACCCTACTCTGGATGTGGGTGATCGCGTTTTAGCCGAGAAGGTTTCATATTTCTTTAAGAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCACCTCCAATCTTACAGGAAATTGGTTATAGCTCAGGCGATGTATTCATTAAAAGAATTGTGGCTAAGGCTGGAGATTGTGTTGAGGTTCGCAATGGAAAATTGCTGGTAAATGGTCTTGTTCAAGATGAACATTACATATTAGAGCCGCTTGCTTATGAAATGGATCCAGTGCTCATTCCAGAAGGCTATGTCTTTGTAATGGGAGATAATCGGAACAATAGTTTTGACTCTCATAACTGGGGTCCACTTCCTGTCAAAAACATTCTTGGCAGATCAGTATTTCGCTATTGGCCTCCCTCCAAAGTATCTGACACCACATATGAACCACAAGTAGCAGACAATGCTGTTGCAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

373

Amino Acids

40.68

Weight (kDa)

8.6

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06870 AT2G30440
fragaria_vesca	FvH4_2g40680 FvH4_2g40680
malus_domestica	MD02G1187600.v1.1 MD06G1221000.v1.1 MD08G1040300.v1.1 MD15G1034800.v1.1
prunus_persica	Prupe.1G388900_v2.0.a1 Prupe.1G388900_v2.0.a1
pyrus_communis	pycom08g03250 pycom15g03200
rosa_chinensis	RchiOBHm_Chr6g0299931
rosa_multiflora	Rmu_co8498643.1_g000001 Rmu_sc0008233.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168260
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404700 Rh6BG413000 Rh6CG419100
rosa_wichuraiana	Rw6G035410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	155, 229
AccB1I	GGYRCC	1 cut(s)	757
AccBSI	CCGCTC	1 cut(s)	537
AccII	CGCG	4 cut(s)	12, 508, 550, 690
AciI	CCGC	9 cut(s)	10, 166, 216, 332, 471, 506, 508, 537, 905
AclWI	GGATC	3 cut(s)	133, 917, 930
AcoI	YGGCCR	2 cut(s)	213, 630
AcsI	RAATTY	2 cut(s)	143, 559
AcuI	CTGAAG	2 cut(s)	327, 332
AfaI	GTAC	3 cut(s)	173, 239, 665
AfiI	CCNNNNNNNGG	1 cut(s)	673
AgsI	TTSAA	5 cut(s)	376, 454, 559, 754, 881
AluBI	AGCT	4 cut(s)	24, 207, 347, 789
AluI	AGCT	4 cut(s)	24, 207, 347, 789
Alw21I	GWGCWC	2 cut(s)	209, 933
Alw26I	GTCTC	4 cut(s)	117, 343, 412, 425
AlwI	GGATC	3 cut(s)	133, 917, 930
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	213, 630, 1049
ApoI	RAATTY	2 cut(s)	143, 559
ArsI	GACNNNNNNTTYG	4 cut(s)	90, 122, 246, 278
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	2 cut(s)	502, 1001
AsuC2I	CCSGG	2 cut(s)	71, 381
AsuHPI	GGTGA	1 cut(s)	695
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	2 cut(s)	502, 1001
AxyI	CCTNAGG	1 cut(s)	729
BamHI	GGATCC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	757
BanII	GRGCYC	3 cut(s)	209, 284, 639
Bbv12I	GWGCWC	2 cut(s)	209, 933
BbvCI	CCTCAGC	1 cut(s)	498
BceAI	ACGGC	3 cut(s)	214, 336, 355
BcnI	CCSGG	2 cut(s)	71, 381
BcoDI	GTCTC	4 cut(s)	117, 343, 412, 425
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	216, 905
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	2 cut(s)	217, 906
Bme1390I	CCNGG	2 cut(s)	71, 381
Bme18I	GGWCC	2 cut(s)	502, 1001
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	502, 1001
BmiI	GGNNCC	5 cut(s)	475, 504, 759, 924, 1002
BmrFI	CCNGG	2 cut(s)	71, 381
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	1006
BpmI	CTGGAG	1 cut(s)	849
Bpu10I	CCTNAGC	4 cut(s)	498, 579, 790, 822
Bpu1102I	GCTNAGC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	71, 381
Bsa29I	ATCGAT	1 cut(s)	644
BsaI	GGTCTC	2 cut(s)	117, 412
BsaJI	CCNNGG	3 cut(s)	57, 85, 506
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	4 cut(s)	523, 553, 822, 852
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse1I	ACTGG	2 cut(s)	926, 1001
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	856
BseCI	ATCGAT	1 cut(s)	644
BseDI	CCNNGG	3 cut(s)	57, 85, 506
BseGI	GGATG	3 cut(s)	53, 493, 682
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	3 cut(s)	489, 720, 804
BseNI	ACTGG	2 cut(s)	926, 1001
BseRI	GAGGAG	1 cut(s)	547
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	4 cut(s)	12, 508, 550, 690
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	215, 632, 1051
BshNI	GGYRCC	1 cut(s)	757
BshVI	ATCGAT	1 cut(s)	644
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	209, 933
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	4 cut(s)	30, 70, 381, 440
BslFI	GGGAC	2 cut(s)	143, 488
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmAI	GTCTC	4 cut(s)	117, 343, 412, 425
BsmFI	GGGAC	2 cut(s)	143, 488
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	215, 632, 1051
Bso31I	GGTCTC	2 cut(s)	117, 412
BsoBI	CYCGRG	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	4 cut(s)	209, 284, 639, 933
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
Bsp1720I	GCTNAGC	1 cut(s)	20
BspACI	CCGC	9 cut(s)	10, 166, 216, 332, 471, 506, 508, 537, 905
BspANI	GGCC	3 cut(s)	215, 632, 1051
BspCNI	CTCAG	3 cut(s)	490, 721, 803
BspDI	ATCGAT	1 cut(s)	644
BspFNI	CGCG	4 cut(s)	12, 508, 550, 690
BspLI	GGNNCC	5 cut(s)	475, 504, 759, 924, 1002
BspPI	GGATC	3 cut(s)	133, 917, 930
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	757
BspTNI	GGTCTC	2 cut(s)	117, 412
BsrBI	CCGCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	856
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	926, 1001
BssECI	CCNNGG	3 cut(s)	57, 85, 506
BssMI	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
Bst4CI	ACNGT	2 cut(s)	436, 604
Bst6I	CTCTTC	2 cut(s)	249, 346
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstAUI	TGTACA	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	209, 213, 909
BstDEI	CTNAG	7 cut(s)	20, 219, 498, 579, 729, 790, 822
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	53, 493, 682
BstFNI	CGCG	4 cut(s)	12, 508, 550, 690
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	8 cut(s)	128, 288, 303, 390, 644, 688, 925, 1034
BstMAI	GTCTC	4 cut(s)	117, 343, 412, 425
BstMBI	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 59, 208, 329, 353, 1100
BstSCI	CCNGG	2 cut(s)	69, 379
BstUI	CGCG	4 cut(s)	12, 508, 550, 690
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
Bsu15I	ATCGAT	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	3 cut(s)	215, 632, 1051
BsuTUI	ATCGAT	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	1 cut(s)	810
BtsCI	GGATG	3 cut(s)	53, 493, 682
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	591, 600, 933
Cac8I	GCNNGC	3 cut(s)	209, 213, 909
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	502, 1001
Cfr42I	CCGCGG	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	644
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	3 cut(s)	172, 238, 664
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	3 cut(s)	172, 238, 664
DdeI	CTNAG	7 cut(s)	20, 219, 498, 579, 729, 790, 822
DpnI	GATC	8 cut(s)	127, 287, 302, 389, 643, 687, 924, 1033
DpnII	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
DrdI	GACNNNNNNGTC	2 cut(s)	155, 229
DseDI	GACNNNNNNGTC	2 cut(s)	155, 229
EaeI	YGGCCR	2 cut(s)	213, 630
Eam1104I	CTCTTC	2 cut(s)	249, 346
EarI	CTCTTC	2 cut(s)	249, 346
EciI	GGCGGA	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	207
Eco24I	GRGCYC	3 cut(s)	209, 284, 639
Eco31I	GGTCTC	2 cut(s)	117, 412
Eco47I	GGWCC	2 cut(s)	502, 1001
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	327, 332
Eco81I	CCTNAGG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRI	GAATTC	2 cut(s)	143, 559
EcoT38I	GRGCYC	3 cut(s)	209, 284, 639
FaeI	CATG	1 cut(s)	394
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	2 cut(s)	143, 488
FatI	CATG	1 cut(s)	390
FauI	CCCGC	2 cut(s)	325, 513
FauNDI	CATATG	1 cut(s)	1078
Fnu4HI	GCNGC	2 cut(s)	216, 905
FokI	GGATG	3 cut(s)	40, 500, 689
FriOI	GRGCYC	3 cut(s)	209, 284, 639
Fsp4HI	GCNGC	2 cut(s)	216, 905
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	2 cut(s)	216, 905
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	3 cut(s)	215, 632, 1051
HapII	CCGG	4 cut(s)	30, 70, 381, 440
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	2 cut(s)	318, 513
HindII	GTYRAC	2 cut(s)	318, 513
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	2 cut(s)	646, 986
HpaII	CCGG	4 cut(s)	30, 70, 381, 440
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	6 cut(s)	240, 318, 463, 513, 591, 1004
Hpy188I	TCNGA	7 cut(s)	77, 125, 312, 571, 739, 972, 1069
Hpy188III	TCNNGA	5 cut(s)	95, 674, 881, 938, 1116
Hpy8I	GTNNAC	6 cut(s)	240, 318, 463, 513, 591, 1004
HpyAV	CCTTC	4 cut(s)	448, 634, 697, 935
HpyCH4III	ACNGT	2 cut(s)	436, 604
HpyCH4V	TGCA	2 cut(s)	426, 1109
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 59, 208, 329, 353, 1100
HpyF3I	CTNAG	7 cut(s)	20, 219, 498, 579, 729, 790, 822
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	550
KspI	CCGCGG	1 cut(s)	509
Kzo9I	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
LmnI	GCTCC	2 cut(s)	352, 534
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	13, 598
MalI	GATC	8 cut(s)	127, 287, 302, 389, 643, 687, 924, 1033
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
MboII	GAAGA	2 cut(s)	266, 333
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	4 cut(s)	209, 284, 639, 933
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	1 cut(s)	55
MseI	TTAA	3 cut(s)	618, 720, 807
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	4 cut(s)	30, 70, 381, 440
MspR9I	CCNGG	2 cut(s)	71, 381
Mva1269I	GAATGC	1 cut(s)	104
MvnI	CGCG	4 cut(s)	12, 508, 550, 690
MwoI	GCNNNNNNNGC	6 cut(s)	30, 59, 208, 329, 353, 1100
NciI	CCSGG	2 cut(s)	71, 381
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	5 cut(s)	475, 504, 759, 924, 1002
NmeAIII	GCCGAG	5 cut(s)	38, 110, 228, 658, 724
NmuCI	GTSAC	2 cut(s)	13, 598
NspV	TTCGAA	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	217, 906
Ple19I	CGATCG	1 cut(s)	288
PleI	GAGTC	1 cut(s)	980
PpsI	GAGTC	1 cut(s)	980
PpuMI	RGGWCCY	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	5 cut(s)	475, 504, 759, 924, 1002
PspPI	GGNCC	2 cut(s)	502, 1001
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	922
PvuI	CGATCG	1 cut(s)	288
RsaI	GTAC	3 cut(s)	173, 239, 665
RsaNI	GTAC	3 cut(s)	172, 238, 664
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	209
SacII	CCGCGG	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	618, 720, 807
SatI	GCNGC	2 cut(s)	216, 905
Sau3AI	GATC	8 cut(s)	125, 285, 300, 387, 641, 685, 922, 1031
Sau96I	GGNCC	2 cut(s)	502, 1001
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	2 cut(s)	71, 381
SduI	GDGCHC	4 cut(s)	209, 284, 639, 933
SfaNI	GCATC	1 cut(s)	62
Sfr303I	CCGCGG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	509
SinI	GGWCC	2 cut(s)	502, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	659
SsiI	CCGC	9 cut(s)	10, 166, 216, 332, 471, 506, 508, 537, 905
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	69, 379
TaaI	ACNGT	2 cut(s)	436, 604
TaqI	TCGA	4 cut(s)	147, 197, 386, 644
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	218, 907
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	3 cut(s)	618, 720, 807
Tru9I	TTAA	3 cut(s)	618, 720, 807
TscAI	CASTG	3 cut(s)	598, 607, 933
TseFI	GTSAC	2 cut(s)	13, 598
Tsp45I	GTSAC	2 cut(s)	13, 598
TspDTI	ATGAA	5 cut(s)	699, 793, 900, 930, 1095
TspGWI	ACGGA	2 cut(s)	145, 339
TspRI	CASTG	3 cut(s)	598, 607, 933
VpaK11BI	GGWCC	2 cut(s)	502, 1001
XapI	RAATTY	2 cut(s)	143, 559
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.