Rh6AG404700

Thylakoidal processing peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009896
Physical Location & Seq
Reverse (-)
60123377 .. 60126287
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG404700.1

Sequence Viewer

Length: 786 bp
ATGGCGATCCGCGTCACCCTAGGGTTTTCCGGCTACGTGGCCCAAAACCTGGCCTCCTCCGCCAGTATTCGCGCCAGTAATTGCCGCGGCGTCCACGAATGCTGGGTTAGGTCTCTGCTGTTCGGCACCAACCAGAAGGCCGATCTCGACCCCTCCGGCACCGTCCCCGGTTACCGGTCCAAATTCGCCGCCAGGTCCAAGGCTCCGACCTCCCTCTACGGCGCCCTTGCCGAAGAATTCCTCTGCCAAAGCTCCAAGACCCCGATTATGTCCACCTTGATCTCCGTTTTGAAGTCAACGGCCGCCGTCACCAGTCCTTCTCTGGCTTCCCCGTCTCTTGGCCTCGGAATCTCGCCGGTCAAACCCGGTTCGATCATGCCGTTCTTGCAGGCCTCCAAGTGGCTTCCCTGCAACGAATCTGTTCCGGCGAAATTGGCGAGCGAGATGGACAGGAAACTGCGTTTGGATGATGATGATGCTGAGGTGGTGGCCTCTGCCTCGGAGTTGAGTAAGAATGGATTGCAGAGGAGCGGTTGGTTATCGCGCCTCTTGAATTCTTGCTCCGAAGACGCAAAGGCAGTCTTCACTGCTGTGACTGTCAGCGTTCTGTTCCGCTCATCCTTGGCCGAGCCCAGGTCCATTCCTTCCACCTCCATGTACCCTACTCTCGATGTGGGTGATCGTGTTCTAGCTGAGAAGGTCAGTAATGTTCTCCAATTTGCGGAATGGTTTTTAATTCATGTGTATTGGTGTGAACTTAATGTTCATAAGTTCATTGATTCATAG

Protein Analysis

261

Amino Acids

28.17

Weight (kDa)

8.51

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 191 - 236 5.3e-07 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 125, 158, 221
AccB7I CCANNNNNTGG 1 cut(s) 49
AccBSI CCGCTC 2 cut(s) 531, 615
AccII CGCG 4 cut(s) 12, 72, 87, 544
AciI CCGC 9 cut(s) 10, 60, 85, 87, 189, 303, 531, 613, 722
AcoI YGGCCR 2 cut(s) 300, 624
AcsI RAATTY 3 cut(s) 182, 236, 553
AcyI GRCGYC 2 cut(s) 90, 222
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 6 cut(s) 49, 174, 338, 399, 633, 721
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 292, 553
AjnI CCWGG 3 cut(s) 48, 191, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 2 cut(s) 252, 692
AluI AGCT 2 cut(s) 252, 692
Alw26I GTCTC 2 cut(s) 117, 339
AoxI GGCC 8 cut(s) 39, 51, 138, 300, 340, 390, 489, 624
ApoI RAATTY 3 cut(s) 182, 236, 553
AsiGI ACCGGT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 420
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 3 cut(s) 74, 224, 546
AspS9I GGNCC 4 cut(s) 40, 177, 195, 636
AsuC2I CCSGG 2 cut(s) 168, 366
AsuHPI GGTGA 3 cut(s) 7, 301, 689
AvaII GGWCC 3 cut(s) 177, 195, 636
AvrII CCTAGG 1 cut(s) 19
BanI GGYRCC 3 cut(s) 125, 158, 221
BanII GRGCYC 1 cut(s) 633
BbsI GAAGAC 2 cut(s) 573, 574
BbvCI CCTCAGC 1 cut(s) 480
BccI CCATC 1 cut(s) 439
BceAI ACGGC 4 cut(s) 235, 290, 315, 364
BciT130I CCWGG 3 cut(s) 50, 193, 634
BcnI CCSGG 2 cut(s) 168, 366
BcoDI GTCTC 2 cut(s) 117, 339
BfaI CTAG 2 cut(s) 20, 689
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 4 cut(s) 85, 88, 189, 303
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 4 cut(s) 86, 89, 190, 304
Bme1390I CCNGG 5 cut(s) 50, 168, 193, 366, 634
Bme18I GGWCC 3 cut(s) 177, 195, 636
BmgT120I GGNCC 4 cut(s) 40, 177, 195, 636
BmiI GGNNCC 4 cut(s) 127, 160, 204, 223
BmrFI CCNGG 5 cut(s) 50, 168, 193, 366, 634
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 573, 574
Bpu10I CCTNAGC 1 cut(s) 480
BpuMI CCSGG 2 cut(s) 168, 366
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 90, 222
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 8 cut(s) 19, 85, 166, 198, 343, 498, 621, 632
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 174, 338, 399, 633, 721
Bse118I RCCGGY 2 cut(s) 174, 355
Bse1I ACTGG 3 cut(s) 63, 75, 312
BseBI CCWGG 3 cut(s) 50, 193, 634
BseDI CCNNGG 8 cut(s) 19, 85, 166, 198, 343, 498, 621, 632
BseGI GGATG 2 cut(s) 472, 617
BseLI CCNNNNNNNGG 6 cut(s) 49, 174, 338, 399, 633, 721
BseMII CTCAG 2 cut(s) 471, 684
BseNI ACTGG 3 cut(s) 63, 75, 312
BseRI GAGGAG 2 cut(s) 46, 541
BseX3I CGGCCG 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 4 cut(s) 12, 72, 87, 544
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 8 cut(s) 41, 53, 140, 302, 342, 392, 491, 626
BshNI GGYRCC 3 cut(s) 125, 158, 221
BshTI ACCGGT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 303
BsiSI CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 6 cut(s) 49, 174, 338, 399, 633, 721
BsmAI GTCTC 2 cut(s) 117, 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 8 cut(s) 41, 53, 140, 302, 342, 392, 491, 626
Bso31I GGTCTC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 5 cut(s) 6, 142, 279, 372, 679
BspACI CCGC 9 cut(s) 10, 60, 85, 87, 189, 303, 531, 613, 722
BspANI GGCC 8 cut(s) 41, 53, 140, 302, 342, 392, 491, 626
BspCNI CTCAG 2 cut(s) 472, 685
BspFNI CGCG 4 cut(s) 12, 72, 87, 544
BspLI GGNNCC 4 cut(s) 127, 160, 204, 223
BspT107I GGYRCC 3 cut(s) 125, 158, 221
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 2 cut(s) 531, 615
BsrFI RCCGGY 2 cut(s) 174, 355
BsrI ACTGG 3 cut(s) 63, 75, 312
BssAI RCCGGY 2 cut(s) 174, 355
BssECI CCNNGG 8 cut(s) 19, 85, 166, 198, 343, 498, 621, 632
BssMI GATC 5 cut(s) 6, 142, 279, 372, 679
BssNI GRCGYC 2 cut(s) 90, 222
BssT1I CCWWGG 3 cut(s) 19, 198, 621
Bst2UI CCWGG 3 cut(s) 50, 193, 634
Bst4CI ACNGT 2 cut(s) 163, 598
BstACI GRCGYC 2 cut(s) 90, 222
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 390, 439
BstDEI CTNAG 2 cut(s) 480, 693
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 2 cut(s) 472, 617
BstFNI CGCG 4 cut(s) 12, 72, 87, 544
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 74, 224, 546
BstKTI GATC 5 cut(s) 9, 145, 282, 375, 682
BstMAI GTCTC 2 cut(s) 117, 339
BstMBI GATC 5 cut(s) 6, 142, 279, 372, 679
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 59, 385, 434
BstNI CCWGG 3 cut(s) 50, 193, 634
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 5 cut(s) 48, 166, 191, 364, 632
BstUI CGCG 4 cut(s) 12, 72, 87, 544
BstV2I GAAGAC 2 cut(s) 573, 574
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 8 cut(s) 41, 53, 140, 302, 342, 392, 491, 626
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 472, 617
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 390, 439
CfoI GCGC 3 cut(s) 74, 224, 546
Cfr10I RCCGGY 2 cut(s) 174, 355
Cfr13I GGNCC 4 cut(s) 40, 177, 195, 636
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 2 cut(s) 79, 578
Csp6I GTAC 1 cut(s) 658
CspAI ACCGGT 1 cut(s) 174
CviAII CATG 3 cut(s) 376, 655, 740
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 2 cut(s) 480, 693
DinI GGCGCC 1 cut(s) 223
DpnI GATC 5 cut(s) 8, 144, 281, 374, 681
DpnII GATC 5 cut(s) 6, 142, 279, 372, 679
EaeI YGGCCR 2 cut(s) 300, 624
EagI CGGCCG 1 cut(s) 300
EciI GGCGGA 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 3 cut(s) 19, 198, 621
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 633
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 3 cut(s) 177, 195, 636
Eco52I CGGCCG 1 cut(s) 300
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 2 cut(s) 236, 553
EcoRII CCWGG 3 cut(s) 48, 191, 632
EcoT14I CCWWGG 3 cut(s) 19, 198, 621
EcoT38I GRGCYC 1 cut(s) 633
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 3 cut(s) 19, 198, 621
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 3 cut(s) 379, 658, 743
FaiI YATR 6 cut(s) 269, 377, 656, 741, 768, 784
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 375, 654, 739
Fnu4HI GCNGC 4 cut(s) 85, 88, 189, 303
FokI GGATG 2 cut(s) 479, 604
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 4 cut(s) 85, 88, 189, 303
FspBI CTAG 2 cut(s) 20, 689
GlaI GCGC 3 cut(s) 73, 223, 545
GluI GCNGC 4 cut(s) 85, 88, 189, 303
GsaI CCCAGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 8 cut(s) 41, 53, 140, 302, 342, 392, 491, 626
HapII CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
HgaI GACGC 2 cut(s) 79, 578
HhaI GCGC 3 cut(s) 74, 224, 546
Hin1I GRCGYC 2 cut(s) 90, 222
Hin1II CATG 3 cut(s) 379, 658, 743
Hin6I GCGC 3 cut(s) 72, 222, 544
HinP1I GCGC 3 cut(s) 72, 222, 544
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 348, 416, 779
HpaII CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
HphI GGTGA 3 cut(s) 7, 301, 689
Hpy166II GTNNAC 4 cut(s) 94, 273, 297, 755
Hpy188I TCNGA 4 cut(s) 207, 347, 502, 565
Hpy188III TCNNGA 3 cut(s) 146, 550, 668
Hpy8I GTNNAC 4 cut(s) 94, 273, 297, 755
HpyAV CCTTC 4 cut(s) 130, 327, 654, 691
HpyCH4III ACNGT 2 cut(s) 163, 598
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 388, 411, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 385, 434
HpyF3I CTNAG 2 cut(s) 480, 693
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 90, 222
Hsp92II CATG 3 cut(s) 379, 658, 743
HspAI GCGC 3 cut(s) 72, 222, 544
KasI GGCGCC 1 cut(s) 221
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 5 cut(s) 6, 142, 279, 372, 679
LmnI GCTCC 4 cut(s) 208, 257, 528, 566
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 20, 689
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 13, 170, 307, 592
MalI GATC 5 cut(s) 8, 144, 281, 374, 681
MbiI CCGCTC 2 cut(s) 531, 615
MboI GATC 5 cut(s) 6, 142, 279, 372, 679
MboII GAAGA 3 cut(s) 245, 574, 578
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 7 cut(s) 79, 182, 236, 431, 553, 716, 735
Mly113I GGCGCC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 734, 759
MslI CAYNNNNRTG 2 cut(s) 590, 653
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
MspR9I CCNGG 5 cut(s) 50, 168, 193, 366, 634
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 3 cut(s) 50, 193, 634
MvnI CGCG 4 cut(s) 12, 72, 87, 544
MwoI GCNNNNNNNGC 3 cut(s) 59, 385, 434
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 168, 366
NdeII GATC 5 cut(s) 6, 142, 279, 372, 679
NlaIII CATG 3 cut(s) 379, 658, 743
NlaIV GGNNCC 4 cut(s) 127, 160, 204, 223
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 3 cut(s) 13, 307, 592
OliI CACNNNNGTG 1 cut(s) 590
PceI AGGCCT 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 348, 416, 779
PflMI CCANNNNNTGG 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 4 cut(s) 86, 89, 190, 304
PluTI GGCGCC 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 3 cut(s) 48, 191, 632
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 3 cut(s) 48, 191, 632
PspN4I GGNNCC 4 cut(s) 127, 160, 204, 223
PspPI GGNCC 4 cut(s) 40, 177, 195, 636
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
RseI CAYNNNNRTG 2 cut(s) 590, 653
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 2 cut(s) 734, 759
SatI GCNGC 4 cut(s) 85, 88, 189, 303
Sau3AI GATC 5 cut(s) 6, 142, 279, 372, 679
Sau96I GGNCC 4 cut(s) 40, 177, 195, 636
ScrFI CCNGG 5 cut(s) 50, 168, 193, 366, 634
SduI GDGCHC 1 cut(s) 633
SfaNI GCATC 1 cut(s) 466
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 3 cut(s) 177, 195, 636
SmiMI CAYNNNNRTG 2 cut(s) 590, 653
Sse9I AATT 7 cut(s) 79, 182, 236, 431, 553, 716, 735
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 9 cut(s) 10, 60, 85, 87, 189, 303, 531, 613, 722
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 20, 689
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 5 cut(s) 48, 166, 191, 364, 632
StyI CCWWGG 3 cut(s) 19, 198, 621
TaaI ACNGT 2 cut(s) 163, 598
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 147, 371, 669
TasI AATT 7 cut(s) 79, 182, 236, 431, 553, 716, 735
TauI GCSGC 4 cut(s) 87, 90, 191, 305
TfiI GAWTC 3 cut(s) 348, 416, 779
Tru1I TTAA 2 cut(s) 734, 759
Tru9I TTAA 2 cut(s) 734, 759
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 3 cut(s) 13, 307, 592
Tsp45I GTSAC 3 cut(s) 13, 307, 592
TspDTI ATGAA 4 cut(s) 728, 755, 763, 771
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 3 cut(s) 177, 195, 636
XapI RAATTY 3 cut(s) 182, 236, 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmaJI CCTAGG 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 2 cut(s) 20, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.