RchiOBHm_Chr6g0299931

Signal peptidase, peptidase S26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009896
Physical Location & Seq
Reverse (-)
60896514 .. 60899256
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26932

Sequence Viewer

Length: 1107 bp
ATGGCGATCCGCGTCACCCTAGGGTTTTCGGGCTACGTGGCCCAAAACCTAGCCTCCTCCGCCAGTATTCGCGCCAGTAATTGCCGCGGCGTCCACGAATGCTGGGTTAGGTCTCTGCTGTTCGGCACCAACCAGAAGGCCGATCTCGACCCCTCCGGCACCGTCCCCGGTTACCGGTCCAAATTCGCCGCCAGGTCCAAGGCTCCGAACTCCCTCTACGGCGCCCTTGCCGAAGAATTCCTCTGCCAAAGCTCCAAGACCCCGATTATGTCCACCTTGATCTCCGTTTTGAAGTCAACAGCCGCCGTCACCGGTCCTTCTCTGGTTTCCCCGTCTCTTGGCCTCGGAATCTCGCCGGTCAAACCCGGTTCGATCATGCCGTTCTTGCAGGCCTCCAAGTGGCTTCCCTGCAACGAATCTGTTCCGGCGAAATTGGTGAGCGAGATGGACAGAAAACTGCGTTTGGATGATGATACTGAGGTGGTGGTCTCCGCCTCGGAGTTGAGTAAGAATGGATTGCAGAGGAGCGGTTGGTTATCGCGCCTCTTGAGTTCTTGCTCCGAAGACGCAAAGGCAGTCTTCACTGCTGTGACTGTCAGCGTTCTGTTCCGCTCATCCTTGGCCGAGCCCAGGTCCATTCCTTCCACCTCTATGTACCCTACTCTCGATGTGGGTGATCGTGTTCTAGCTGAGAAGGTTTCATATCTGTTTAGAAAGCCTGAGGTTTCAGATATAGTCATTTTCAAGGCACCTCCAATCTTGCAGGAGATTGGCTTTAGCTCGGGCGATGTATTCATAAAAAGAATTGTGGCCAAGGCTGGAGACTATGTTGAGGTGCATGATGGGAAATTGTTGGTGAACAGTGAAATTCAAAATGAAAATTACATATTGGAGCCTCTTGCCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATGTCTTTGTGATGGGGGACAACCGCAACAACAGTTTTGACTCTCATAACTGGGGTCCCCTTCCTGTAAAAAACATTCTTGGAAGATCCGTTTTTCGCTACTGGCCTCCCTCCAAAGTGTCCGACATTATGCATGAACCACAGGTAGAAAAATCTGTGGCAATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S26

Protein Analysis

368

Amino Acids

40.12

Weight (kDa)

7.6

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 190 - 347 2.3e-42 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 125, 158, 221, 748
AccBSI CCGCTC 2 cut(s) 528, 612
AccII CGCG 4 cut(s) 12, 72, 87, 541
AclWI GGATC 1 cut(s) 1017
AcoI YGGCCR 2 cut(s) 621, 810
AcsI RAATTY 3 cut(s) 182, 236, 867
AcyI GRCGYC 2 cut(s) 90, 222
AfaI GTAC 1 cut(s) 656
AfiI CCNNNNNNNGG 4 cut(s) 174, 338, 399, 630
AgeI ACCGGT 2 cut(s) 174, 311
AgsI TTSAA 3 cut(s) 292, 745, 872
AjnI CCWGG 2 cut(s) 191, 629
AleI CACNNNNGTG 1 cut(s) 587
AluBI AGCT 3 cut(s) 252, 689, 780
AluI AGCT 3 cut(s) 252, 689, 780
Alw26I GTCTC 4 cut(s) 117, 339, 493, 816
AlwI GGATC 1 cut(s) 1017
Ama87I CYCGRG 1 cut(s) 781
AoxI GGCC 7 cut(s) 39, 138, 340, 390, 621, 810, 1040
ApoI RAATTY 3 cut(s) 182, 236, 867
AsiGI ACCGGT 2 cut(s) 174, 311
Asp700I GAANNNNTTC 2 cut(s) 420, 918
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 3 cut(s) 74, 224, 543
AspS9I GGNCC 6 cut(s) 40, 177, 195, 314, 633, 992
AsuC2I CCSGG 2 cut(s) 168, 366
AsuHPI GGTGA 5 cut(s) 7, 301, 448, 686, 868
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 5 cut(s) 177, 195, 314, 633, 992
AvrII CCTAGG 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 720
BaeI ACNNNNGTAYC 2 cut(s) 465, 498
BalI TGGCCA 1 cut(s) 812
BanI GGYRCC 4 cut(s) 125, 158, 221, 748
BanII GRGCYC 1 cut(s) 630
BbsI GAAGAC 2 cut(s) 570, 571
BccI CCATC 3 cut(s) 439, 836, 943
BceAI ACGGC 3 cut(s) 235, 290, 364
BciT130I CCWGG 2 cut(s) 193, 631
BcnI CCSGG 2 cut(s) 168, 366
BcoDI GTCTC 4 cut(s) 117, 339, 493, 816
BfaI CTAG 3 cut(s) 20, 50, 686
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 4 cut(s) 85, 88, 189, 303
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 4 cut(s) 86, 89, 190, 304
Bme1390I CCNGG 4 cut(s) 168, 193, 366, 631
Bme18I GGWCC 5 cut(s) 177, 195, 314, 633, 992
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 6 cut(s) 40, 177, 195, 314, 633, 992
BmiI GGNNCC 9 cut(s) 127, 160, 204, 223, 750, 894, 915, 993, 994
BmrFI CCNGG 4 cut(s) 168, 193, 366, 631
BmrI ACTGGG 1 cut(s) 997
BmuI ACTGGG 1 cut(s) 997
BpiI GAAGAC 2 cut(s) 570, 571
BpmI CTGGAG 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 568
BpuMI CCSGG 2 cut(s) 168, 366
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 90, 222
BsaI GGTCTC 2 cut(s) 117, 493
BsaJI CCNNGG 9 cut(s) 19, 85, 166, 198, 343, 495, 618, 629, 813
BsaWI WCCGGW 2 cut(s) 174, 311
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 813, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 338, 399, 630
Bse118I RCCGGY 3 cut(s) 174, 311, 355
Bse1I ACTGG 4 cut(s) 63, 75, 992, 1043
Bse21I CCTNAGG 1 cut(s) 720
BseBI CCWGG 2 cut(s) 193, 631
BseDI CCNNGG 9 cut(s) 19, 85, 166, 198, 343, 495, 618, 629, 813
BseGI GGATG 2 cut(s) 472, 614
BseLI CCNNNNNNNGG 4 cut(s) 174, 338, 399, 630
BseMII CTCAG 3 cut(s) 468, 681, 711
BseNI ACTGG 4 cut(s) 63, 75, 992, 1043
BseRI GAGGAG 2 cut(s) 46, 538
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 4 cut(s) 12, 72, 87, 541
BshFI GGCC 7 cut(s) 41, 140, 342, 392, 623, 812, 1042
BshNI GGYRCC 4 cut(s) 125, 158, 221, 748
BshTI ACCGGT 2 cut(s) 174, 311
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 7 cut(s) 156, 168, 175, 312, 356, 366, 425
BslFI GGGAC 3 cut(s) 149, 968, 978
BslI CCNNNNNNNGG 4 cut(s) 174, 338, 399, 630
BsmAI GTCTC 4 cut(s) 117, 339, 493, 816
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 3 cut(s) 149, 968, 978
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 7 cut(s) 41, 140, 342, 392, 623, 812, 1042
Bso31I GGTCTC 2 cut(s) 117, 493
BsoBI CYCGRG 1 cut(s) 781
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
BspANI GGCC 7 cut(s) 41, 140, 342, 392, 623, 812, 1042
BspCNI CTCAG 3 cut(s) 469, 682, 712
BspFNI CGCG 4 cut(s) 12, 72, 87, 541
BspLI GGNNCC 9 cut(s) 127, 160, 204, 223, 750, 894, 915, 993, 994
BspPI GGATC 1 cut(s) 1017
BspT107I GGYRCC 4 cut(s) 125, 158, 221, 748
BspTNI GGTCTC 2 cut(s) 117, 493
BsrBI CCGCTC 2 cut(s) 528, 612
BsrFI RCCGGY 3 cut(s) 174, 311, 355
BsrI ACTGG 4 cut(s) 63, 75, 992, 1043
BssAI RCCGGY 3 cut(s) 174, 311, 355
BssECI CCNNGG 9 cut(s) 19, 85, 166, 198, 343, 495, 618, 629, 813
BssMI GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
BssNI GRCGYC 2 cut(s) 90, 222
BssT1I CCWWGG 4 cut(s) 19, 198, 618, 813
Bst2UI CCWGG 2 cut(s) 193, 631
Bst4CI ACNGT 4 cut(s) 163, 595, 863, 971
BstACI GRCGYC 2 cut(s) 90, 222
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 3 cut(s) 477, 690, 720
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 2 cut(s) 472, 614
BstFNI CGCG 4 cut(s) 12, 72, 87, 541
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 74, 224, 543
BstKTI GATC 6 cut(s) 9, 145, 282, 375, 679, 1025
BstMAI GTCTC 4 cut(s) 117, 339, 493, 816
BstMBI GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
BstMWI GCNNNNNNNGC 2 cut(s) 59, 385
BstNI CCWGG 2 cut(s) 193, 631
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 4 cut(s) 166, 191, 364, 629
BstUI CGCG 4 cut(s) 12, 72, 87, 541
BstV2I GAAGAC 2 cut(s) 570, 571
BstX2I RGATCY 1 cut(s) 1022
BstYI RGATCY 1 cut(s) 1022
Bsu36I CCTNAGG 1 cut(s) 720
BsuRI GGCC 7 cut(s) 41, 140, 342, 392, 623, 812, 1042
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 801
BtsCI GGATG 2 cut(s) 472, 614
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 582, 868
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 3 cut(s) 74, 224, 543
Cfr10I RCCGGY 3 cut(s) 174, 311, 355
Cfr13I GGNCC 6 cut(s) 40, 177, 195, 314, 633, 992
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 2 cut(s) 79, 575
Csp6I GTAC 1 cut(s) 655
CspAI ACCGGT 2 cut(s) 174, 311
CviAII CATG 3 cut(s) 376, 839, 1070
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 3 cut(s) 477, 690, 720
DinI GGCGCC 1 cut(s) 223
DpnI GATC 6 cut(s) 8, 144, 281, 374, 678, 1024
DpnII GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
EaeI YGGCCR 2 cut(s) 621, 810
EciI GGCGGA 2 cut(s) 49, 481
Eco130I CCWWGG 4 cut(s) 19, 198, 618, 813
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 2 cut(s) 117, 493
Eco47I GGWCC 5 cut(s) 177, 195, 314, 633, 992
Eco81I CCTNAGG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 781
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 992
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 191, 629
EcoT14I CCWWGG 4 cut(s) 19, 198, 618, 813
EcoT22I ATGCAT 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 630
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 4 cut(s) 19, 198, 618, 813
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 3 cut(s) 379, 842, 1073
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 3 cut(s) 149, 968, 978
FatI CATG 3 cut(s) 375, 838, 1069
Fnu4HI GCNGC 4 cut(s) 85, 88, 189, 303
FokI GGATG 2 cut(s) 479, 601
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 4 cut(s) 85, 88, 189, 303
FspBI CTAG 3 cut(s) 20, 50, 686
GlaI GCGC 3 cut(s) 73, 223, 542
GluI GCNGC 4 cut(s) 85, 88, 189, 303
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 840
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 7 cut(s) 41, 140, 342, 392, 623, 812, 1042
HapII CCGG 7 cut(s) 156, 168, 175, 312, 356, 366, 425
HgaI GACGC 2 cut(s) 79, 575
HhaI GCGC 3 cut(s) 74, 224, 543
Hin1I GRCGYC 2 cut(s) 90, 222
Hin1II CATG 3 cut(s) 379, 842, 1073
Hin6I GCGC 3 cut(s) 72, 222, 541
HinP1I GCGC 3 cut(s) 72, 222, 541
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 348, 416, 977
HpaII CCGG 7 cut(s) 156, 168, 175, 312, 356, 366, 425
HphI GGTGA 5 cut(s) 7, 301, 448, 686, 868
Hpy166II GTNNAC 4 cut(s) 94, 273, 297, 859
Hpy188I TCNGA 6 cut(s) 207, 347, 499, 562, 730, 1060
Hpy188III TCNNGA 5 cut(s) 146, 547, 665, 929, 1104
Hpy8I GTNNAC 4 cut(s) 94, 273, 297, 859
HpyAV CCTTC 6 cut(s) 130, 327, 651, 688, 926, 1007
HpyCH4III ACNGT 4 cut(s) 163, 595, 863, 971
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 6 cut(s) 388, 411, 520, 763, 838, 1069
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 385
HpyF3I CTNAG 3 cut(s) 477, 690, 720
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 90, 222
Hsp92II CATG 3 cut(s) 379, 842, 1073
HspAI GCGC 3 cut(s) 72, 222, 541
KasI GGCGCC 1 cut(s) 221
KflI GGGWCCC 1 cut(s) 992
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
LmnI GCTCC 5 cut(s) 208, 257, 525, 563, 892
MaeI CTAG 3 cut(s) 20, 50, 686
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 13, 170, 307, 589
MalI GATC 6 cut(s) 8, 144, 281, 374, 678, 1024
MbiI CCGCTC 2 cut(s) 528, 612
MboI GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
MboII GAAGA 4 cut(s) 245, 571, 575, 1032
MflI RGATCY 1 cut(s) 1022
MhlI GDGCHC 1 cut(s) 630
MlsI TGGCCA 1 cut(s) 812
MluNI TGGCCA 1 cut(s) 812
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 1 cut(s) 1083
Mox20I TGGCCA 1 cut(s) 812
Mph1103I ATGCAT 1 cut(s) 1071
MroXI GAANNNNTTC 2 cut(s) 420, 918
MscI TGGCCA 1 cut(s) 812
MslI CAYNNNNRTG 2 cut(s) 587, 650
Msp20I TGGCCA 1 cut(s) 812
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 7 cut(s) 156, 168, 175, 312, 356, 366, 425
MspR9I CCNGG 4 cut(s) 168, 193, 366, 631
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 2 cut(s) 193, 631
MvnI CGCG 4 cut(s) 12, 72, 87, 541
MwoI GCNNNNNNNGC 2 cut(s) 59, 385
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 168, 366
NdeII GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
NlaIII CATG 3 cut(s) 379, 842, 1073
NlaIV GGNNCC 9 cut(s) 127, 160, 204, 223, 750, 894, 915, 993, 994
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 3 cut(s) 13, 307, 589
NsiI ATGCAT 1 cut(s) 1071
OliI CACNNNNGTG 1 cut(s) 587
PceI AGGCCT 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 420, 918
PfeI GAWTC 2 cut(s) 348, 416
PinAI ACCGGT 2 cut(s) 174, 311
PkrI GCNGC 4 cut(s) 86, 89, 190, 304
PleI GAGTC 1 cut(s) 971
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 971
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 992
Psp5II RGGWCCY 1 cut(s) 992
Psp6I CCWGG 2 cut(s) 191, 629
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 2 cut(s) 191, 629
PspN4I GGNNCC 9 cut(s) 127, 160, 204, 223, 750, 894, 915, 993, 994
PspPI GGNCC 6 cut(s) 40, 177, 195, 314, 633, 992
PspPPI RGGWCCY 1 cut(s) 992
PsrI GAACNNNNNNTAC 2 cut(s) 200, 232
PsuI RGATCY 1 cut(s) 1022
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
RseI CAYNNNNRTG 2 cut(s) 587, 650
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 4 cut(s) 85, 88, 189, 303
Sau3AI GATC 6 cut(s) 6, 142, 279, 372, 676, 1022
Sau96I GGNCC 6 cut(s) 40, 177, 195, 314, 633, 992
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 4 cut(s) 168, 193, 366, 631
SduI GDGCHC 1 cut(s) 630
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 5 cut(s) 177, 195, 314, 633, 992
SmiMI CAYNNNNRTG 2 cut(s) 587, 650
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
SseBI AGGCCT 1 cut(s) 392
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 3 cut(s) 20, 50, 686
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 4 cut(s) 166, 191, 364, 629
StyI CCWWGG 4 cut(s) 19, 198, 618, 813
TaaI ACNGT 4 cut(s) 163, 595, 863, 971
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 147, 371, 666
TauI GCSGC 4 cut(s) 87, 90, 191, 305
TfiI GAWTC 2 cut(s) 348, 416
TscAI CASTG 2 cut(s) 589, 868
TseFI GTSAC 3 cut(s) 13, 307, 589
Tsp45I GTSAC 3 cut(s) 13, 307, 589
TspDTI ATGAA 5 cut(s) 690, 784, 891, 921, 1086
TspGWI ACGGA 2 cut(s) 274, 1015
TspRI CASTG 2 cut(s) 589, 868
VpaK11BI GGWCC 5 cut(s) 177, 195, 314, 633, 992
XapI RAATTY 3 cut(s) 182, 236, 867
XmaJI CCTAGG 1 cut(s) 19
XmnI GAANNNNTTC 2 cut(s) 420, 918
XspI CTAG 3 cut(s) 20, 50, 686
Zsp2I ATGCAT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.