Rroxscaffold_7G00168260

Signal peptidase, peptidase S26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009896
Physical Location & Seq
Forward (+)
9152555 .. 9155158
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168260.1

Sequence Viewer

Length: 1083 bp
ATGGCGATCCGCGTTACCCTAGGGTTTTCCGGATACGTAGCCCAAAACCTAGCCTCCTCTGCCAGTGTTCGCGTCAGTAATTGCCGCGGCGTCCACGAATGCTGGGTTAGGTCTCTGCTGTTCGGCACCAACCAGAAGGCCGATCTCGACCCCTCCGGCACCGTCCCCAATTACCGGTCCAAGTTCGCCGCCAGGTCCAAGGCTCCGACCTCCCTCTACGGCGCCCTGGCCGAAGAATTCCTCGGCCCAAGCTCCAAGACCCCGATTATGTCCACCTTGATCTCCGTTTTGAAGTCAACGGCCTCCGTCACCGGTCCTTCTCTGGCTTCCCCGTCTCTTGGTCTTGGAATCTCGCCGGTCAAACCCGGTTCGATCATGCCGTTCTTGCAGGGCTCCAAGTGGCTTCCCTGCAACGAATCTGTTCCGGCGAAATTGGTGAGCGAGATGGACAGAAAACTGCGTTTGGATGATGATGAGGTGGTGACCTCTGCCTCGGAGAGGAGCGGTTGGTTATCGCGCCTCTTGAGTTCTTGCTCCGAAGACGCAAAGGCAGTCTTCACTGCTGTGACTGTCAGCGTTCTGTTCCGGTCATCCTTGGCCGAGCCCAGGTCCATTCCTTCCACCTCTATGTACCCTACTCTCGATGTGGGTGATCGTGTTCTAGCTGAGAAGGTTTCATATCTGTTTAGAAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCACCCCCAATCTTGCAGGAAATTGGCTTTAGCTCGGGCGATGTATTCATAAAAAGAATTGTGGCCAAGGCTGGAGATTATGTTGAGGTACATGATGGGAAATTGTTGGTGAATGGTGAAATTCAAAATGAAAATTACATATTGGAGCCTCTTGCCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATGTCTTTGTGATGGGGGACAACCGCAACAACAGTTTTGACTCTCATAACTGGGGTCCCCTTCCTGTAAAAAACATTCTTGGAAGATCCGTGTTTCGCTACTGGCCTCCCTCCAAAGTGTCTGACATTATGCATGAACCACAGGTAGAAAAATCTGTGGCAATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S26

Protein Analysis

360

Amino Acids

39.21

Weight (kDa)

6.92

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 182 - 339 2.3e-43 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 125, 158, 221, 724
AccBSI CCGCTC 1 cut(s) 504
AccII CGCG 4 cut(s) 12, 72, 87, 517
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 6 cut(s) 10, 85, 87, 189, 504, 937
AclWI GGATC 1 cut(s) 993
AcoI YGGCCR 3 cut(s) 228, 597, 786
AcsI RAATTY 2 cut(s) 236, 843
AcyI GRCGYC 2 cut(s) 90, 222
AfaI GTAC 2 cut(s) 632, 813
AfiI CCNNNNNNNGG 4 cut(s) 174, 338, 498, 606
AgeI ACCGGT 2 cut(s) 174, 311
AgsI TTSAA 3 cut(s) 292, 721, 848
AjnI CCWGG 3 cut(s) 191, 225, 605
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 3 cut(s) 252, 665, 756
AluI AGCT 3 cut(s) 252, 665, 756
Alw26I GTCTC 2 cut(s) 117, 339
AlwI GGATC 1 cut(s) 993
Ama87I CYCGRG 1 cut(s) 757
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 7 cut(s) 138, 228, 244, 300, 597, 786, 1016
ApoI RAATTY 2 cut(s) 236, 843
AsiGI ACCGGT 2 cut(s) 174, 311
Asp700I GAANNNNTTC 2 cut(s) 420, 894
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 2 cut(s) 224, 519
AspS9I GGNCC 6 cut(s) 177, 195, 245, 314, 609, 968
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 6 cut(s) 301, 448, 493, 662, 844, 851
AvaI CYCGRG 1 cut(s) 757
AvaII GGWCC 5 cut(s) 177, 195, 314, 609, 968
AvrII CCTAGG 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 696
BalI TGGCCA 1 cut(s) 788
BanI GGYRCC 4 cut(s) 125, 158, 221, 724
BanII GRGCYC 2 cut(s) 395, 606
BbsI GAAGAC 2 cut(s) 546, 547
BccI CCATC 3 cut(s) 439, 812, 919
BceAI ACGGC 3 cut(s) 235, 315, 364
BciT130I CCWGG 3 cut(s) 193, 227, 607
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 117, 339
BfaI CTAG 3 cut(s) 20, 50, 662
BfoI RGCGCY 1 cut(s) 225
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 3 cut(s) 85, 88, 189
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 3 cut(s) 86, 89, 190
Bme1390I CCNGG 4 cut(s) 193, 227, 366, 607
Bme18I GGWCC 5 cut(s) 177, 195, 314, 609, 968
BmeT110I CYCGRG 1 cut(s) 757
BmgT120I GGNCC 6 cut(s) 177, 195, 245, 314, 609, 968
BmrFI CCNGG 4 cut(s) 193, 227, 366, 607
BmrI ACTGGG 1 cut(s) 973
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 2 cut(s) 546, 547
BpmI CTGGAG 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 544
BpuMI CCSGG 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 90, 222
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 9 cut(s) 19, 85, 198, 225, 241, 492, 594, 605, 789
BsaWI WCCGGW 4 cut(s) 29, 174, 311, 585
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 789, 819
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 338, 498, 606
Bse118I RCCGGY 3 cut(s) 174, 311, 355
Bse1I ACTGG 3 cut(s) 63, 968, 1019
Bse21I CCTNAGG 1 cut(s) 696
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 3 cut(s) 193, 227, 607
BseDI CCNNGG 9 cut(s) 19, 85, 198, 225, 241, 492, 594, 605, 789
BseGI GGATG 2 cut(s) 472, 590
BseLI CCNNNNNNNGG 4 cut(s) 174, 338, 498, 606
BseMII CTCAG 2 cut(s) 657, 687
BseNI ACTGG 3 cut(s) 63, 968, 1019
BseRI GAGGAG 2 cut(s) 46, 514
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 4 cut(s) 12, 72, 87, 517
BshFI GGCC 7 cut(s) 140, 230, 246, 302, 599, 788, 1018
BshNI GGYRCC 4 cut(s) 125, 158, 221, 724
BshTI ACCGGT 2 cut(s) 174, 311
BsiHKCI CYCGRG 1 cut(s) 757
BsiSI CCGG 8 cut(s) 30, 156, 175, 312, 356, 366, 425, 586
BslFI GGGAC 3 cut(s) 149, 944, 954
BslI CCNNNNNNNGG 4 cut(s) 174, 338, 498, 606
BsmAI GTCTC 2 cut(s) 117, 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 3 cut(s) 149, 944, 954
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 7 cut(s) 140, 230, 246, 302, 599, 788, 1018
Bso31I GGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 757
Bsp1286I GDGCHC 2 cut(s) 395, 606
Bsp13I TCCGGA 1 cut(s) 29
Bsp143I GATC 6 cut(s) 6, 142, 279, 372, 652, 998
BspACI CCGC 6 cut(s) 10, 85, 87, 189, 504, 937
BspANI GGCC 7 cut(s) 140, 230, 246, 302, 599, 788, 1018
BspCNI CTCAG 2 cut(s) 658, 688
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 4 cut(s) 12, 72, 87, 517
BspPI GGATC 1 cut(s) 993
BspT107I GGYRCC 4 cut(s) 125, 158, 221, 724
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 504
BsrFI RCCGGY 3 cut(s) 174, 311, 355
BsrI ACTGG 3 cut(s) 63, 968, 1019
BssAI RCCGGY 3 cut(s) 174, 311, 355
BssECI CCNNGG 9 cut(s) 19, 85, 198, 225, 241, 492, 594, 605, 789
BssMI GATC 6 cut(s) 6, 142, 279, 372, 652, 998
BssNI GRCGYC 2 cut(s) 90, 222
BssT1I CCWWGG 4 cut(s) 19, 198, 594, 789
Bst2UI CCWGG 3 cut(s) 193, 227, 607
Bst4CI ACNGT 3 cut(s) 163, 571, 947
BstACI GRCGYC 2 cut(s) 90, 222
BstBAI YACGTR 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 666, 696
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 481
BstENI CCTNNNNNAGG 1 cut(s) 496
BstF5I GGATG 2 cut(s) 472, 590
BstFNI CGCG 4 cut(s) 12, 72, 87, 517
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 519
BstKTI GATC 6 cut(s) 9, 145, 282, 375, 655, 1001
BstMAI GTCTC 2 cut(s) 117, 339
BstMBI GATC 6 cut(s) 6, 142, 279, 372, 652, 998
BstMWI GCNNNNNNNGC 2 cut(s) 59, 385
BstNI CCWGG 3 cut(s) 193, 227, 607
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 4 cut(s) 191, 225, 364, 605
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 4 cut(s) 12, 72, 87, 517
BstV2I GAAGAC 2 cut(s) 546, 547
BstX2I RGATCY 1 cut(s) 998
BstYI RGATCY 1 cut(s) 998
Bsu36I CCTNAGG 1 cut(s) 696
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 7 cut(s) 140, 230, 246, 302, 599, 788, 1018
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 777
BtsCI GGATG 2 cut(s) 472, 590
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 70, 558
CfoI GCGC 2 cut(s) 224, 519
Cfr10I RCCGGY 3 cut(s) 174, 311, 355
Cfr13I GGNCC 6 cut(s) 177, 195, 245, 314, 609, 968
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 3 cut(s) 61, 79, 551
Csp6I GTAC 2 cut(s) 631, 812
CspAI ACCGGT 2 cut(s) 174, 311
CviAII CATG 3 cut(s) 376, 815, 1046
CviQI GTAC 2 cut(s) 631, 812
DdeI CTNAG 2 cut(s) 666, 696
DinI GGCGCC 1 cut(s) 223
DpnI GATC 6 cut(s) 8, 144, 281, 374, 654, 1000
DpnII GATC 6 cut(s) 6, 142, 279, 372, 652, 998
EaeI YGGCCR 3 cut(s) 228, 597, 786
Eco105I TACGTA 1 cut(s) 37
Eco130I CCWWGG 4 cut(s) 19, 198, 594, 789
Eco24I GRGCYC 2 cut(s) 395, 606
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 5 cut(s) 177, 195, 314, 609, 968
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 481
EcoNI CCTNNNNNAGG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 968
EcoO65I GGTNACC 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 191, 225, 605
EcoT14I CCWWGG 4 cut(s) 19, 198, 594, 789
EcoT22I ATGCAT 1 cut(s) 1047
EcoT38I GRGCYC 2 cut(s) 395, 606
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 4 cut(s) 19, 198, 594, 789
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 3 cut(s) 379, 818, 1049
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 3 cut(s) 149, 944, 954
FatI CATG 3 cut(s) 375, 814, 1045
Fnu4HI GCNGC 3 cut(s) 85, 88, 189
FokI GGATG 2 cut(s) 479, 577
FriOI GRGCYC 2 cut(s) 395, 606
Fsp4HI GCNGC 3 cut(s) 85, 88, 189
FspBI CTAG 3 cut(s) 20, 50, 662
GlaI GCGC 2 cut(s) 223, 518
GluI GCNGC 3 cut(s) 85, 88, 189
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 816
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 7 cut(s) 140, 230, 246, 302, 599, 788, 1018
HapII CCGG 8 cut(s) 30, 156, 175, 312, 356, 366, 425, 586
HgaI GACGC 3 cut(s) 61, 79, 551
HhaI GCGC 2 cut(s) 224, 519
Hin1I GRCGYC 2 cut(s) 90, 222
Hin1II CATG 3 cut(s) 379, 818, 1049
Hin6I GCGC 2 cut(s) 222, 517
HinP1I GCGC 2 cut(s) 222, 517
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 348, 416, 953
HpaII CCGG 8 cut(s) 30, 156, 175, 312, 356, 366, 425, 586
HphI GGTGA 6 cut(s) 301, 448, 493, 662, 844, 851
Hpy166II GTNNAC 3 cut(s) 94, 273, 297
Hpy188I TCNGA 5 cut(s) 207, 496, 538, 706, 1036
Hpy188III TCNNGA 6 cut(s) 30, 146, 523, 641, 905, 1080
Hpy8I GTNNAC 3 cut(s) 94, 273, 297
HpyAV CCTTC 6 cut(s) 130, 327, 627, 664, 902, 983
HpyCH4III ACNGT 3 cut(s) 163, 571, 947
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 388, 411, 739, 1045
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 385
HpyF3I CTNAG 2 cut(s) 666, 696
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 90, 222
Hsp92II CATG 3 cut(s) 379, 818, 1049
HspAI GCGC 2 cut(s) 222, 517
KasI GGCGCC 1 cut(s) 221
KflI GGGWCCC 1 cut(s) 968
Kpn2I TCCGGA 1 cut(s) 29
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 6 cut(s) 6, 142, 279, 372, 652, 998
LmnI GCTCC 6 cut(s) 208, 257, 398, 501, 539, 868
MaeI CTAG 3 cut(s) 20, 50, 662
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 13, 307, 481, 565
MalI GATC 6 cut(s) 8, 144, 281, 374, 654, 1000
MbiI CCGCTC 1 cut(s) 504
MboI GATC 6 cut(s) 6, 142, 279, 372, 652, 998
MboII GAAGA 4 cut(s) 245, 547, 551, 1008
MflI RGATCY 1 cut(s) 998
MhlI GDGCHC 2 cut(s) 395, 606
MlsI TGGCCA 1 cut(s) 788
MluNI TGGCCA 1 cut(s) 788
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 947
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 1047
MroI TCCGGA 1 cut(s) 29
MroXI GAANNNNTTC 2 cut(s) 420, 894
MscI TGGCCA 1 cut(s) 788
MslI CAYNNNNRTG 2 cut(s) 563, 626
Msp20I TGGCCA 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 8 cut(s) 30, 156, 175, 312, 356, 366, 425, 586
MspR9I CCNGG 4 cut(s) 193, 227, 366, 607
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 3 cut(s) 193, 227, 607
MvnI CGCG 4 cut(s) 12, 72, 87, 517
MwoI GCNNNNNNNGC 2 cut(s) 59, 385
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 366
NdeII GATC 6 cut(s) 6, 142, 279, 372, 652, 998
NlaIII CATG 3 cut(s) 379, 818, 1049
NmeAIII GCCGAG 2 cut(s) 222, 625
NmuCI GTSAC 3 cut(s) 307, 481, 565
NsiI ATGCAT 1 cut(s) 1047
OliI CACNNNNGTG 1 cut(s) 563
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 420, 894
PfeI GAWTC 2 cut(s) 348, 416
PinAI ACCGGT 2 cut(s) 174, 311
PkrI GCNGC 3 cut(s) 86, 89, 190
PleI GAGTC 1 cut(s) 947
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 947
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 968
Psp5II RGGWCCY 1 cut(s) 968
Psp6I CCWGG 3 cut(s) 191, 225, 605
PspEI GGTNACC 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 3 cut(s) 191, 225, 605
PspPI GGNCC 6 cut(s) 177, 195, 245, 314, 609, 968
PspPPI RGGWCCY 1 cut(s) 968
PsuI RGATCY 1 cut(s) 998
RsaI GTAC 2 cut(s) 632, 813
RsaNI GTAC 2 cut(s) 631, 812
RseI CAYNNNNRTG 2 cut(s) 563, 626
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 3 cut(s) 85, 88, 189
Sau3AI GATC 6 cut(s) 6, 142, 279, 372, 652, 998
Sau96I GGNCC 6 cut(s) 177, 195, 245, 314, 609, 968
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 4 cut(s) 193, 227, 366, 607
SduI GDGCHC 2 cut(s) 395, 606
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 5 cut(s) 177, 195, 314, 609, 968
SmiMI CAYNNNNRTG 2 cut(s) 563, 626
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
SnaBI TACGTA 1 cut(s) 37
SsiI CCGC 6 cut(s) 10, 85, 87, 189, 504, 937
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 3 cut(s) 20, 50, 662
StyD4I CCNGG 4 cut(s) 191, 225, 364, 605
StyI CCWWGG 4 cut(s) 19, 198, 594, 789
TaaI ACNGT 3 cut(s) 163, 571, 947
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 147, 371, 642
TauI GCSGC 3 cut(s) 87, 90, 191
TfiI GAWTC 2 cut(s) 348, 416
TscAI CASTG 2 cut(s) 70, 565
TseFI GTSAC 3 cut(s) 307, 481, 565
Tsp45I GTSAC 3 cut(s) 307, 481, 565
TspDTI ATGAA 5 cut(s) 666, 760, 867, 897, 1062
TspGWI ACGGA 3 cut(s) 274, 295, 991
TspRI CASTG 2 cut(s) 70, 565
VpaK11BI GGWCC 5 cut(s) 177, 195, 314, 609, 968
XagI CCTNNNNNAGG 1 cut(s) 496
XapI RAATTY 2 cut(s) 236, 843
XmaJI CCTAGG 1 cut(s) 19
XmnI GAANNNNTTC 2 cut(s) 420, 894
XspI CTAG 3 cut(s) 20, 50, 662
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.