Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009896

Physical Location & Seq

Genomic Coordinates Forward (+)

2018817 .. 2020686

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTATCCGCGTAACCCTCAGCTTCTCCGGCTATGTGGCCCAAAACCTAGCATCCTCTGCAAGCCTCCGCGCGGGGAACTGCCGAGGATTTCAGGAATGCTGGGTTCGGTCTCGGGTATTCGGATCCAACCAGAAGCCCCATCGCGACCCCTCCGTCCCCGTCCGCAATTACCAGACCCAATTCTCCCGCTCGAAGCCTTCATCGGCTGCCGTTAAGCCCTTGCCGTCGTTGTACACCGCTCTCGCCGAGGAGATTCTGGGCGAGAGCTGCAAGAGCCCGATCGTGCTGGGCTTGATCTCGCTTCTGAAGTCAACGGCTATCGCCACCGGCGTCTCTTTTGCTCCGGCCTCTTTGGAGATTTCGCCGTTTAAATCCGGTTCGGTCATGCCCTTTTTACAGGTCTCAAAGTGGTTGCCCTGCAACGAGTCCGCCCCGGTGTCGATAATGAAGGAAGTGGATAAAGGTGGAACGTTGTGTGTCGATGAGGTTGCAGAAGCCTCGCTGCTGGCTAAGAAAGACTTGGGCAGGACTGGGTTTTTGTCGCGGTTGTTGAATTGTTGCTCGGAGGACGCTAAGGCTGTGTTCACTGCTGTTACAGTCAGTGTATTGTTTTTGTCCTTCTTGGCGGAGCCCCGATCAATTCCCTCCACTTCAATGTACCCTACTCTCGATGTCGGCGATCGCGTTTTGGCGGAGAAGGTTTCATATTTCTTTAAAAAGCCCGAGGTTTCAGATATAGTAATTTTCAAGGCACCTCCAATCTTACAGGTCCGCGATGGGAAATTGCTGATCAATGGTCTTGTTCAGAACGAAAATTACATATTGGAGCCGCTCGATTATGAAATGGATCCAGTGCTTATTCCAGAAGGCTCTGTCTTTGTAATGGGAGATAATCGAAACAACAGCTTTGACTCTCATAATTGGGGCCCGCTTCCTGTCAAAAACATTCTTGGCAGATCAGTATTTCGCTATTGGCCTCCCTCCAAGGTGTCCAACACCGTGTTTGAACCACAAGGACCAAGTAATGCCGTTGCGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

349

Amino Acids

37.87

Weight (kDa)

8.6

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06870 AT2G30440
fragaria_vesca	FvH4_2g40680 FvH4_2g40680
malus_domestica	MD02G1187600.v1.1 MD06G1221000.v1.1 MD08G1040300.v1.1 MD15G1034800.v1.1
prunus_persica	Prupe.1G388900_v2.0.a1 Prupe.1G388900_v2.0.a1
pyrus_communis	pycom08g03250 pycom15g03200
rosa_chinensis	RchiOBHm_Chr6g0299931
rosa_multiflora	Rmu_co8498643.1_g000001 Rmu_sc0008233.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168260
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404700 Rh6BG413000 Rh6CG419100
rosa_wichuraiana	Rw6G035410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	754
AccBSI	CCGCTC	3 cut(s)	192, 242, 835
AccII	CGCG	7 cut(s)	12, 72, 74, 147, 547, 687, 777
AclI	AACGTT	1 cut(s)	473
AclWI	GGATC	4 cut(s)	120, 133, 845, 858
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	236, 662
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	556, 657, 751, 1010
AluBI	AGCT	3 cut(s)	24, 270, 909
AluI	AGCT	3 cut(s)	24, 270, 909
Alw26I	GTCTC	3 cut(s)	117, 340, 409
AlwI	GGATC	4 cut(s)	120, 133, 845, 858
Ama87I	CYCGRG	2 cut(s)	114, 725
AoxI	GGCC	4 cut(s)	39, 348, 928, 977
ApaI	GGGCCC	1 cut(s)	932
ApeKI	GCWGC	3 cut(s)	209, 270, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AsiSI	GCGATCGC	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	5 cut(s)	40, 772, 928, 929, 1019
AsuC2I	CCSGG	1 cut(s)	437
AvaI	CYCGRG	2 cut(s)	114, 725
AvaII	GGWCC	2 cut(s)	772, 1019
BaeGI	GKGCMC	1 cut(s)	932
BamHI	GGATCC	2 cut(s)	125, 850
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	3 cut(s)	281, 636, 932
BbvCI	CCTCAGC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	196, 257, 492
BccI	CCATC	2 cut(s)	150, 773
BceAI	ACGGC	5 cut(s)	197, 211, 333, 352, 1016
BcgI	CGANNNNNNTGC	4 cut(s)	473, 483, 507, 517
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	3 cut(s)	117, 340, 409
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	210, 271, 506, 833
BlsI	GCNGC	4 cut(s)	211, 272, 507, 834
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	2 cut(s)	772, 1019
BmeT110I	CYCGRG	2 cut(s)	114, 725
BmgT120I	GGNCC	5 cut(s)	40, 772, 928, 929, 1019
BmiI	GGNNCC	7 cut(s)	127, 633, 756, 831, 852, 929, 930
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	20, 576
BpuMI	CCSGG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	2 cut(s)	117, 409
BsaJI	CCNNGG	5 cut(s)	85, 249, 435, 726, 987
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	538, 854
BseDI	CCNNGG	5 cut(s)	85, 249, 435, 726, 987
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	538, 854
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	932
BseXI	GCAGC	3 cut(s)	196, 257, 492
BseYI	CCCAGC	2 cut(s)	102, 289
Bsh1236I	CGCG	7 cut(s)	12, 72, 74, 147, 547, 687, 777
Bsh1285I	CGRYCG	2 cut(s)	285, 685
BshFI	GGCC	4 cut(s)	41, 350, 930, 979
BshNI	GGYRCC	1 cut(s)	754
BsiEI	CGRYCG	2 cut(s)	285, 685
BsiHKCI	CYCGRG	2 cut(s)	114, 725
BsiSI	CCGG	5 cut(s)	30, 330, 347, 378, 437
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	117, 340, 409
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	4 cut(s)	41, 350, 930, 979
Bso31I	GGTCTC	2 cut(s)	117, 409
BsoBI	CYCGRG	2 cut(s)	114, 725
Bsp120I	GGGCCC	1 cut(s)	928
Bsp1286I	GDGCHC	3 cut(s)	281, 636, 932
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	41, 350, 930, 979
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	7 cut(s)	12, 72, 74, 147, 547, 687, 777
BspLI	GGNNCC	7 cut(s)	127, 633, 756, 831, 852, 929, 930
BspPI	GGATC	4 cut(s)	120, 133, 845, 858
BspT107I	GGYRCC	1 cut(s)	754
BspTNI	GGTCTC	2 cut(s)	117, 409
BsrBI	CCGCTC	3 cut(s)	192, 242, 835
BsrFI	RCCGGY	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	538, 854
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	5 cut(s)	85, 249, 435, 726, 987
BssMI	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	987
Bst4CI	ACNGT	2 cut(s)	601, 1003
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	64, 510, 932
BstDEI	CTNAG	3 cut(s)	20, 513, 576
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	7 cut(s)	12, 72, 74, 147, 547, 687, 777
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	8 cut(s)	128, 285, 300, 641, 685, 795, 853, 962
BstMAI	GTCTC	3 cut(s)	117, 340, 409
BstMBI	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
BstMCI	CGRYCG	2 cut(s)	285, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 59, 270, 276
BstSCI	CCNGG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	932
BstUI	CGCG	7 cut(s)	12, 72, 74, 147, 547, 687, 777
BstV1I	GCAGC	3 cut(s)	196, 257, 492
BstX2I	RGATCY	2 cut(s)	125, 850
BstYI	RGATCY	2 cut(s)	125, 850
BsuRI	GGCC	4 cut(s)	41, 350, 930, 979
BtgZI	GCGATG	2 cut(s)	128, 792
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	588, 610, 861
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	64, 510, 932
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	5 cut(s)	40, 772, 928, 929, 1019
CseI	GACGC	2 cut(s)	322, 581
Csp6I	GTAC	2 cut(s)	235, 661
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	2 cut(s)	235, 661
DdeI	CTNAG	3 cut(s)	20, 513, 576
DpnI	GATC	8 cut(s)	127, 284, 299, 640, 684, 794, 852, 961
DpnII	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
DraI	TTTAAA	2 cut(s)	373, 718
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EciI	GGCGGA	3 cut(s)	421, 644, 710
Eco130I	CCWWGG	1 cut(s)	987
Eco24I	GRGCYC	3 cut(s)	281, 636, 932
Eco31I	GGTCTC	2 cut(s)	117, 409
Eco47I	GGWCC	2 cut(s)	772, 1019
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	2 cut(s)	114, 725
EcoO109I	RGGNCCY	1 cut(s)	928
EcoT14I	CCWWGG	1 cut(s)	987
EcoT38I	GRGCYC	3 cut(s)	281, 636, 932
ErhI	CCWWGG	1 cut(s)	987
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	1 cut(s)	391
FaiI	YATR	7 cut(s)	36, 389, 709, 740, 824, 843, 921
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	387
FauI	CCCGC	3 cut(s)	67, 197, 939
FbaI	TGATCA	1 cut(s)	792
Fnu4HI	GCNGC	4 cut(s)	210, 271, 506, 833
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	3 cut(s)	281, 636, 932
Fsp4HI	GCNGC	4 cut(s)	210, 271, 506, 833
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	4 cut(s)	210, 271, 506, 833
GsaI	CCCAGC	2 cut(s)	106, 293
HaeIII	GGCC	4 cut(s)	41, 350, 930, 979
HapII	CCGG	5 cut(s)	30, 330, 347, 378, 437
HgaI	GACGC	2 cut(s)	322, 581
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	3 cut(s)	256, 428, 914
HpaII	CCGG	5 cut(s)	30, 330, 347, 378, 437
Hpy166II	GTNNAC	3 cut(s)	237, 315, 588
Hpy188I	TCNGA	5 cut(s)	125, 309, 568, 736, 810
Hpy188III	TCNNGA	5 cut(s)	95, 146, 671, 866, 1044
Hpy8I	GTNNAC	3 cut(s)	237, 315, 588
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	5 cut(s)	210, 445, 631, 694, 863
HpyCH4III	ACNGT	2 cut(s)	601, 1003
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	4 cut(s)	62, 273, 423, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 59, 270, 276
HpyF3I	CTNAG	3 cut(s)	20, 513, 576
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
LmnI	GCTCC	3 cut(s)	349, 631, 829
Lsp1109I	GCAGC	3 cut(s)	196, 257, 492
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	13, 595
MalI	GATC	8 cut(s)	127, 284, 299, 640, 684, 794, 852, 961
MbiI	CCGCTC	3 cut(s)	192, 242, 835
MboI	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
MflI	RGATCY	2 cut(s)	125, 850
MhlI	GDGCHC	3 cut(s)	281, 636, 932
MluCI	AATT	8 cut(s)	169, 182, 556, 642, 744, 785, 817, 922
MlyI	GAGTC	2 cut(s)	437, 908
MmeI	TCCRAC	2 cut(s)	153, 1020
MseI	TTAA	3 cut(s)	216, 372, 717
MslI	CAYNNNNRTG	1 cut(s)	656
MspI	CCGG	5 cut(s)	30, 330, 347, 378, 437
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	104
MvnI	CGCG	7 cut(s)	12, 72, 74, 147, 547, 687, 777
MwoI	GCNNNNNNNGC	4 cut(s)	30, 59, 270, 276
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	7 cut(s)	127, 633, 756, 831, 852, 929, 930
NmeAIII	GCCGAG	2 cut(s)	110, 274
NruI	TCGCGA	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	3 cut(s)	330, 678, 684
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	211, 272, 507, 834
Ple19I	CGATCG	2 cut(s)	285, 685
PleI	GAGTC	2 cut(s)	436, 908
PpsI	GAGTC	2 cut(s)	436, 908
Psp1406I	AACGTT	1 cut(s)	473
PspFI	CCCAGC	2 cut(s)	102, 289
PspN4I	GGNNCC	7 cut(s)	127, 633, 756, 831, 852, 929, 930
PspOMI	GGGCCC	1 cut(s)	928
PspPI	GGNCC	5 cut(s)	40, 772, 928, 929, 1019
PsrI	GAACNNNNNNTAC	2 cut(s)	803, 835
PsuI	RGATCY	2 cut(s)	125, 850
PvuI	CGATCG	2 cut(s)	285, 685
RgaI	GCGATCGC	1 cut(s)	685
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	2 cut(s)	236, 662
RsaNI	GTAC	2 cut(s)	235, 661
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	216, 372, 717
SatI	GCNGC	4 cut(s)	210, 271, 506, 833
Sau3AI	GATC	8 cut(s)	125, 282, 297, 638, 682, 792, 850, 959
Sau96I	GGNCC	5 cut(s)	40, 772, 928, 929, 1019
SchI	GAGTC	2 cut(s)	437, 908
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	281, 636, 932
SfaAI	GCGATCGC	1 cut(s)	685
SfaNI	GCATC	1 cut(s)	62
SgfI	GCGATCGC	1 cut(s)	685
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	772, 1019
SmiMI	CAYNNNNRTG	1 cut(s)	656
Sse9I	AATT	8 cut(s)	169, 182, 556, 642, 744, 785, 817, 922
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	2 cut(s)	601, 1003
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	6 cut(s)	194, 443, 483, 672, 837, 898
TaqII	GACCGA	2 cut(s)	99, 373
TasI	AATT	8 cut(s)	169, 182, 556, 642, 744, 785, 817, 922
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	835
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	216, 372, 717
Tru9I	TTAA	3 cut(s)	216, 372, 717
TscAI	CASTG	3 cut(s)	595, 610, 861
TseI	GCWGC	3 cut(s)	209, 270, 505
TspDTI	ATGAA	4 cut(s)	192, 464, 696, 858
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	3 cut(s)	595, 610, 861
VpaK11BI	GGWCC	2 cut(s)	772, 1019
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.