Rmu_sc0008233.1_g000001

Thylakoidal processing peptidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008233.1
Physical Location & Seq
Reverse (-)
1340 .. 3033
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008233.1_g000001.1.cds

Sequence Viewer

Length: 1110 bp
atggcgatccgcgtcaccctagggttttccggctacgtggcccaaaacctggcctcctccgccagtattcgcgccagtaattgccgcggcgtccacgaatgctgggttaggtctctgctgttcggcaccaaccagaaggccgatctcgacccctccggcaccgtccccggttaccggtccaaattcgccgccaggtccaaggctccgacctccctctacggcgcccttgccgaagaattcctctgccaaagctccaagaccccgattatgtccaccttgatctccgttttgaagtcaacggccgccgtcaccagtccttctctggcttccccgtctcttggcctcggaatctcgccggtcaaacccggttcgatcgtgccgttcttgcaggcctccaagtggcttccctgcaacgaatctgttccggcgaaattggtgagcgagatggacagaaaactgcgtttggatgatgatgatgctgaggtggtggcctctgcctcggagttgagtaagaatggattgcagaggagcggttggttatcgcgcctcttgagttcttgctccgaagacgcaaaggcagtcttcactgctgtgactgtcagcgttctgttccgctcatccttggccgagcccaggtccattccttccacctccatgtaccctactctcgatgtgggtgatcgtgttctagctgagaaggtttcatatctgtttagaaagcctgaggtttcagatatagtcattttcaaggcacctccaatcttgcaggagattggctttagctcgggcgatgtattcataaaaagaattgtggccaaggctggagactatgttgaggtacatgatgggaaattgttggtgaacagtgaaattcaaaatgaaaattacatattggagcctcttgcctatgaaatggaaccaattctcattccagaaggctatgtctttgtgatgggggacaaccgcaacaacagttttgactctcataactggggtccccttcctgtaaaaaacattcttggaagatccgtgtttcgctactggcctccctccaaagtgtccgacattatgcatgaaccacaggtagaaaaatctgtggcaatttcttga

Protein Analysis

369

Amino Acids

40.14

Weight (kDa)

6.91

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 125, 158, 221, 751
AccB7I CCANNNNNTGG 1 cut(s) 49
AccBSI CCGCTC 2 cut(s) 531, 615
AccII CGCG 4 cut(s) 12, 72, 87, 544
AciI CCGC 9 cut(s) 10, 60, 85, 87, 189, 303, 531, 613, 964
AclWI GGATC 1 cut(s) 1020
AcoI YGGCCR 3 cut(s) 300, 624, 813
AcsI RAATTY 3 cut(s) 182, 236, 870
AcyI GRCGYC 2 cut(s) 90, 222
AfaI GTAC 2 cut(s) 659, 840
AfiI CCNNNNNNNGG 5 cut(s) 49, 174, 338, 399, 633
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 3 cut(s) 292, 748, 875
AjnI CCWGG 3 cut(s) 48, 191, 632
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 3 cut(s) 252, 692, 783
AluI AGCT 3 cut(s) 252, 692, 783
Alw26I GTCTC 3 cut(s) 117, 339, 819
AlwI GGATC 1 cut(s) 1020
Ama87I CYCGRG 1 cut(s) 784
ApoI RAATTY 3 cut(s) 182, 236, 870
AsiGI ACCGGT 1 cut(s) 174
Asp700I GAANNNNTTC 2 cut(s) 420, 921
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 3 cut(s) 74, 224, 546
AspS9I GGNCC 5 cut(s) 40, 177, 195, 636, 995
AsuC2I CCSGG 2 cut(s) 168, 366
AsuHPI GGTGA 5 cut(s) 7, 301, 448, 689, 871
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 4 cut(s) 177, 195, 636, 995
AvrII CCTAGG 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 723
BalI TGGCCA 1 cut(s) 815
BanI GGYRCC 4 cut(s) 125, 158, 221, 751
BanII GRGCYC 1 cut(s) 633
BbsI GAAGAC 2 cut(s) 573, 574
BbvCI CCTCAGC 1 cut(s) 480
BccI CCATC 3 cut(s) 439, 839, 946
BceAI ACGGC 4 cut(s) 235, 290, 315, 364
BciT130I CCWGG 3 cut(s) 50, 193, 634
BcnI CCSGG 2 cut(s) 168, 366
BcoDI GTCTC 3 cut(s) 117, 339, 819
BfaI CTAG 2 cut(s) 20, 689
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 4 cut(s) 85, 88, 189, 303
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 4 cut(s) 86, 89, 190, 304
Bme1390I CCNGG 5 cut(s) 50, 168, 193, 366, 634
Bme18I GGWCC 4 cut(s) 177, 195, 636, 995
BmeT110I CYCGRG 1 cut(s) 784
BmgT120I GGNCC 5 cut(s) 40, 177, 195, 636, 995
BmiI GGNNCC 9 cut(s) 127, 160, 204, 223, 753, 897, 918, 996, 997
BmrFI CCNGG 5 cut(s) 50, 168, 193, 366, 634
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 1 cut(s) 466
BmuI ACTGGG 1 cut(s) 1000
BpiI GAAGAC 2 cut(s) 573, 574
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 2 cut(s) 168, 366
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 90, 222
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 9 cut(s) 19, 85, 166, 198, 343, 498, 621, 632, 816
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 816, 846
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 174, 338, 399, 633
Bse118I RCCGGY 2 cut(s) 174, 355
Bse1I ACTGG 5 cut(s) 63, 75, 312, 995, 1046
Bse21I CCTNAGG 1 cut(s) 723
BseBI CCWGG 3 cut(s) 50, 193, 634
BseDI CCNNGG 9 cut(s) 19, 85, 166, 198, 343, 498, 621, 632, 816
BseGI GGATG 2 cut(s) 472, 617
BseLI CCNNNNNNNGG 5 cut(s) 49, 174, 338, 399, 633
BseMII CTCAG 3 cut(s) 471, 684, 714
BseNI ACTGG 5 cut(s) 63, 75, 312, 995, 1046
BseRI GAGGAG 2 cut(s) 46, 541
BseX3I CGGCCG 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 4 cut(s) 12, 72, 87, 544
Bsh1285I CGRYCG 2 cut(s) 303, 375
BshNI GGYRCC 4 cut(s) 125, 158, 221, 751
BshTI ACCGGT 1 cut(s) 174
BsiEI CGRYCG 2 cut(s) 303, 375
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
BslFI GGGAC 3 cut(s) 149, 971, 981
BslI CCNNNNNNNGG 5 cut(s) 49, 174, 338, 399, 633
BsmAI GTCTC 3 cut(s) 117, 339, 819
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 3 cut(s) 149, 971, 981
BsmI GAATGC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
BspACI CCGC 9 cut(s) 10, 60, 85, 87, 189, 303, 531, 613, 964
BspCNI CTCAG 3 cut(s) 472, 685, 715
BspFNI CGCG 4 cut(s) 12, 72, 87, 544
BspLI GGNNCC 9 cut(s) 127, 160, 204, 223, 753, 897, 918, 996, 997
BspPI GGATC 1 cut(s) 1020
BspT107I GGYRCC 4 cut(s) 125, 158, 221, 751
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 2 cut(s) 531, 615
BsrFI RCCGGY 2 cut(s) 174, 355
BsrI ACTGG 5 cut(s) 63, 75, 312, 995, 1046
BssAI RCCGGY 2 cut(s) 174, 355
BssECI CCNNGG 9 cut(s) 19, 85, 166, 198, 343, 498, 621, 632, 816
BssMI GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
BssNI GRCGYC 2 cut(s) 90, 222
BssT1I CCWWGG 4 cut(s) 19, 198, 621, 816
Bst2UI CCWGG 3 cut(s) 50, 193, 634
Bst4CI ACNGT 4 cut(s) 163, 598, 866, 974
BstACI GRCGYC 2 cut(s) 90, 222
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 3 cut(s) 480, 693, 723
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 2 cut(s) 472, 617
BstFNI CGCG 4 cut(s) 12, 72, 87, 544
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 74, 224, 546
BstKTI GATC 6 cut(s) 9, 145, 282, 375, 682, 1028
BstMAI GTCTC 3 cut(s) 117, 339, 819
BstMBI GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
BstMCI CGRYCG 2 cut(s) 303, 375
BstMWI GCNNNNNNNGC 2 cut(s) 59, 385
BstNI CCWGG 3 cut(s) 50, 193, 634
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 5 cut(s) 48, 166, 191, 364, 632
BstUI CGCG 4 cut(s) 12, 72, 87, 544
BstV2I GAAGAC 2 cut(s) 573, 574
BstX2I RGATCY 1 cut(s) 1025
BstYI RGATCY 1 cut(s) 1025
BstZI CGGCCG 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 723
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 2 cut(s) 472, 617
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 2 cut(s) 585, 871
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 3 cut(s) 74, 224, 546
Cfr10I RCCGGY 2 cut(s) 174, 355
Cfr13I GGNCC 5 cut(s) 40, 177, 195, 636, 995
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 2 cut(s) 79, 578
Csp6I GTAC 2 cut(s) 658, 839
CspAI ACCGGT 1 cut(s) 174
CviAII CATG 3 cut(s) 655, 842, 1073
CviQI GTAC 2 cut(s) 658, 839
DdeI CTNAG 3 cut(s) 480, 693, 723
DinI GGCGCC 1 cut(s) 223
DpnI GATC 6 cut(s) 8, 144, 281, 374, 681, 1027
DpnII GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
EaeI YGGCCR 3 cut(s) 300, 624, 813
EagI CGGCCG 1 cut(s) 300
EciI GGCGGA 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 4 cut(s) 19, 198, 621, 816
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 633
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 4 cut(s) 177, 195, 636, 995
Eco52I CGGCCG 1 cut(s) 300
Eco81I CCTNAGG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 784
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 995
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 48, 191, 632
EcoT14I CCWWGG 4 cut(s) 19, 198, 621, 816
EcoT22I ATGCAT 1 cut(s) 1074
EcoT38I GRGCYC 1 cut(s) 633
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 4 cut(s) 19, 198, 621, 816
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 3 cut(s) 658, 845, 1076
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 3 cut(s) 149, 971, 981
FatI CATG 3 cut(s) 654, 841, 1072
Fnu4HI GCNGC 4 cut(s) 85, 88, 189, 303
FokI GGATG 2 cut(s) 479, 604
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 4 cut(s) 85, 88, 189, 303
FspBI CTAG 2 cut(s) 20, 689
GlaI GCGC 3 cut(s) 73, 223, 545
GluI GCNGC 4 cut(s) 85, 88, 189, 303
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
HgaI GACGC 2 cut(s) 79, 578
HhaI GCGC 3 cut(s) 74, 224, 546
Hin1I GRCGYC 2 cut(s) 90, 222
Hin1II CATG 3 cut(s) 658, 845, 1076
Hin6I GCGC 3 cut(s) 72, 222, 544
HinP1I GCGC 3 cut(s) 72, 222, 544
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 348, 416, 980
HpaII CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
HphI GGTGA 5 cut(s) 7, 301, 448, 689, 871
Hpy166II GTNNAC 4 cut(s) 94, 273, 297, 862
Hpy188I TCNGA 6 cut(s) 207, 347, 502, 565, 733, 1063
Hpy188III TCNNGA 5 cut(s) 146, 550, 668, 932, 1107
Hpy8I GTNNAC 4 cut(s) 94, 273, 297, 862
HpyAV CCTTC 6 cut(s) 130, 327, 654, 691, 929, 1010
HpyCH4III ACNGT 4 cut(s) 163, 598, 866, 974
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 5 cut(s) 388, 411, 523, 766, 1072
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 385
HpyF3I CTNAG 3 cut(s) 480, 693, 723
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 90, 222
Hsp92II CATG 3 cut(s) 658, 845, 1076
HspAI GCGC 3 cut(s) 72, 222, 544
KasI GGCGCC 1 cut(s) 221
KflI GGGWCCC 1 cut(s) 995
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
LmnI GCTCC 5 cut(s) 208, 257, 528, 566, 895
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 20, 689
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 4 cut(s) 13, 170, 307, 592
MalI GATC 6 cut(s) 8, 144, 281, 374, 681, 1027
MbiI CCGCTC 2 cut(s) 531, 615
MboI GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
MboII GAAGA 4 cut(s) 245, 574, 578, 1035
MflI RGATCY 1 cut(s) 1025
MhlI GDGCHC 1 cut(s) 633
MlsI TGGCCA 1 cut(s) 815
MluNI TGGCCA 1 cut(s) 815
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 2 cut(s) 230, 1086
Mox20I TGGCCA 1 cut(s) 815
Mph1103I ATGCAT 1 cut(s) 1074
MroXI GAANNNNTTC 2 cut(s) 420, 921
MscI TGGCCA 1 cut(s) 815
MslI CAYNNNNRTG 2 cut(s) 590, 653
Msp20I TGGCCA 1 cut(s) 815
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 7 cut(s) 30, 156, 168, 175, 356, 366, 425
MspR9I CCNGG 5 cut(s) 50, 168, 193, 366, 634
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 3 cut(s) 50, 193, 634
MvnI CGCG 4 cut(s) 12, 72, 87, 544
MwoI GCNNNNNNNGC 2 cut(s) 59, 385
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 168, 366
NdeII GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
NlaIII CATG 3 cut(s) 658, 845, 1076
NlaIV GGNNCC 9 cut(s) 127, 160, 204, 223, 753, 897, 918, 996, 997
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 3 cut(s) 13, 307, 592
NsiI ATGCAT 1 cut(s) 1074
OliI CACNNNNGTG 1 cut(s) 590
PceI AGGCCT 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 420, 921
PfeI GAWTC 2 cut(s) 348, 416
PflMI CCANNNNNTGG 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 4 cut(s) 86, 89, 190, 304
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 1 cut(s) 974
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 974
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 995
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 3 cut(s) 48, 191, 632
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 3 cut(s) 48, 191, 632
PspN4I GGNNCC 9 cut(s) 127, 160, 204, 223, 753, 897, 918, 996, 997
PspPI GGNCC 5 cut(s) 40, 177, 195, 636, 995
PspPPI RGGWCCY 1 cut(s) 995
PsuI RGATCY 1 cut(s) 1025
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 2 cut(s) 659, 840
RsaNI GTAC 2 cut(s) 658, 839
RseI CAYNNNNRTG 2 cut(s) 590, 653
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 4 cut(s) 85, 88, 189, 303
Sau3AI GATC 6 cut(s) 6, 142, 279, 372, 679, 1025
Sau96I GGNCC 5 cut(s) 40, 177, 195, 636, 995
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 5 cut(s) 50, 168, 193, 366, 634
SduI GDGCHC 1 cut(s) 633
SfaNI GCATC 1 cut(s) 466
SfoI GGCGCC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 4 cut(s) 177, 195, 636, 995
SmiMI CAYNNNNRTG 2 cut(s) 590, 653
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 9 cut(s) 10, 60, 85, 87, 189, 303, 531, 613, 964
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 20, 689
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 5 cut(s) 48, 166, 191, 364, 632
StyI CCWWGG 4 cut(s) 19, 198, 621, 816
TaaI ACNGT 4 cut(s) 163, 598, 866, 974
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 147, 371, 669
TauI GCSGC 4 cut(s) 87, 90, 191, 305
TfiI GAWTC 2 cut(s) 348, 416
TscAI CASTG 2 cut(s) 592, 871
TseFI GTSAC 3 cut(s) 13, 307, 592
Tsp45I GTSAC 3 cut(s) 13, 307, 592
TspDTI ATGAA 5 cut(s) 693, 787, 894, 924, 1089
TspGWI ACGGA 2 cut(s) 274, 1018
TspRI CASTG 2 cut(s) 592, 871
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 4 cut(s) 177, 195, 636, 995
XapI RAATTY 3 cut(s) 182, 236, 870
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmaJI CCTAGG 1 cut(s) 19
XmnI GAANNNNTTC 2 cut(s) 420, 921
XspI CTAG 2 cut(s) 20, 689
Zsp2I ATGCAT 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.