Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

13286681 .. 13288380

Gene Structure 1700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGAAGAGCACCATGTTGTGAGAAAATGGGGGTGAAGAGAGGACCATGGACTCCTGAAGAAGATCAAATCTTGATCAATTATATTCATCTTTATGGTCATTCTAATTGGCGAGCTCTCCCAAAACACGCAGGTTTACTTAGATGTGGGAAAAGTTGCAGACTTCGTTGGATCAATTATCTTAGACCAGACATTAAACGTGGCAATTTCACTCCTCAAGAAGAACAAACTATTATCAATCTGCATGAAAGCTTAGGCAACAGATGGTCTGCGATTGCTGCAAAATTGCCGGGACGAACCGACAATGAAATAAAAAATGTTTGGCACACTCATTTGAAGAAAAGACTCAGCAAAAATCTAAACAATGGCGGAGACACCAAAGACGTTAACGGAATTAACGAGACCACAAATGAAGACAAAGGATCTGTGATAGTCGACACAGCCTCTTTACAACAATTTTCTAATAGTATTACAACATTTGATATTTCAAATGATAACAAGGACGATATTATGTCGTACGAGGATATTTCTGCCTTGATAGATGATAGTTTTTGGTCGGACGTCATATCGGTAGATAATTCGAATAAGAATGAGAAGAAGATAGAGGATTGGGAAGGATTGATCGATAGAAATAGTAAAAAATGTAGCTATAGTAATTCTAAGTTGTATAATGATGACATGGAGTTTTGGTTTGATGTTTTCACTAGTAATCGTAGAATTGAGGAATTTTCCGACATACCCGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

249

Amino Acids

28.77

Weight (kDa)

5.59

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.1e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	2 cut(s)	179, 430
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	337, 489
AhlI	ACTAGT	1 cut(s)	704
AluBI	AGCT	3 cut(s)	116, 252, 648
AluI	AGCT	3 cut(s)	116, 252, 648
Alw21I	GWGCWC	2 cut(s)	13, 118
Alw26I	GTCTC	2 cut(s)	366, 395
AlwI	GGATC	2 cut(s)	179, 430
Ama87I	CYCGRG	1 cut(s)	740
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	366, 395
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	1 cut(s)	705
BfmI	CTRYAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	624
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	290
BsiWI	CGTACG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	366, 395
BsmFI	GGGAC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	740
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	13, 118
Bsp143I	GATC	5 cut(s)	64, 75, 171, 422, 621
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	360
BspDI	ATCGAT	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	179, 430
BspT104I	TTCGAA	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	5 cut(s)	64, 75, 171, 422, 621
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	140, 182, 253, 347, 660
BstDSI	CCRYGG	1 cut(s)	47
BstKTI	GATC	5 cut(s)	67, 78, 174, 425, 624
BstMAI	GTCTC	2 cut(s)	366, 395
BstMBI	GATC	5 cut(s)	64, 75, 171, 422, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	624
BsuTUI	ATCGAT	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	4 cut(s)	15, 48, 245, 679
CviJI	RGCY	4 cut(s)	116, 252, 443, 648
CviKI_1	RGCY	4 cut(s)	116, 252, 443, 648
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	5 cut(s)	140, 182, 253, 347, 660
DpnI	GATC	5 cut(s)	66, 77, 173, 424, 623
DpnII	GATC	5 cut(s)	64, 75, 171, 422, 621
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	4 cut(s)	18, 51, 248, 682
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	4 cut(s)	14, 47, 244, 678
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	1 cut(s)	279
HapII	CCGG	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	4 cut(s)	18, 51, 248, 682
HincII	GTYRAC	2 cut(s)	388, 436
HindII	GTYRAC	2 cut(s)	388, 436
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	2 cut(s)	52, 345
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	137, 388, 436
Hpy188I	TCNGA	2 cut(s)	559, 733
Hpy188III	TCNNGA	3 cut(s)	56, 73, 218
Hpy8I	GTNNAC	3 cut(s)	137, 388, 436
HpyAV	CCTTC	1 cut(s)	608
HpyCH4IV	ACGT	3 cut(s)	199, 384, 561
HpyCH4V	TGCA	3 cut(s)	159, 244, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	5 cut(s)	140, 182, 253, 347, 660
HpySE526I	ACGT	3 cut(s)	199, 384, 561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	4 cut(s)	18, 51, 248, 682
Ksp22I	TGATCA	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	64, 75, 171, 422, 621
LpnPI	CCDG	4 cut(s)	69, 117, 201, 303
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	705
MaeII	ACGT	3 cut(s)	199, 384, 561
MalI	GATC	5 cut(s)	66, 77, 173, 424, 623
MboI	GATC	5 cut(s)	64, 75, 171, 422, 621
MboII	GAAGA	9 cut(s)	18, 49, 71, 74, 233, 349, 425, 607, 610
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	13, 118
MlyI	GAGTC	2 cut(s)	46, 339
MmeI	TCCRAC	2 cut(s)	149, 537
MnlI	CCTC	6 cut(s)	35, 225, 454, 514, 598, 715
MseI	TTAA	4 cut(s)	195, 387, 396, 748
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	5 cut(s)	64, 75, 171, 422, 621
NlaIII	CATG	4 cut(s)	18, 51, 248, 682
NspV	TTCGAA	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
Pfl23II	CGTACG	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	46, 339
PpsI	GAGTC	2 cut(s)	46, 339
Psp124BI	GAGCTC	1 cut(s)	118
PspLI	CGTACG	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	434
SaqAI	TTAA	4 cut(s)	195, 387, 396, 748
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	5 cut(s)	64, 75, 171, 422, 621
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	46, 339
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	13, 118
SetI	ASST	7 cut(s)	118, 136, 202, 254, 387, 564, 650
SfcI	CTRYAG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	704
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	705
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaiI	ACGT	3 cut(s)	202, 387, 564
TaqI	TCGA	3 cut(s)	435, 581, 624
Tru1I	TTAA	4 cut(s)	195, 387, 396, 748
Tru9I	TTAA	4 cut(s)	195, 387, 396, 748
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	77, 261, 321, 426
TspGWI	ACGGA	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	1 cut(s)	705
ZraI	GACGTC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.