Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

20153481 .. 20155612

Gene Structure 2132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1213900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGAGAGCTCCTTGCTGTGAGAAGATGGGACTGAAGAAGGGGCCATGGACTTCTGAAGAAGATCAAATTCTTACATCCTTCATCCAAAAATATGGTCATGGAAATTGGCGTGCCCTTCCAAAGCAAGCTGGTTTGTTGAGATGTGGGAAGAGTTGCAGACTCCGGTGGATAAACTATTTGAGGCCGGATACCAAGAGAGGAAACTTTACAAGAGAAGAAGAGGAAGCTATCATTAAGTTGCATGATATGCTGGGTAACAGGTGGTCAGCAATTGCAGCAAGATTACCAGGACGCACCGATAACGAAATAAAAAATGTATGGCACACCAACTTGAAAAAAAGACTCAAAGACCATACTACAATAACATCACCAGCAAGTAGTAGTAATTGTACTTTCAATGTCACAAGCCAGTCTGCTGATCAACCTAAAAATATGAATTATCCACAGCCATCTTCTAGTGATGTTTCCTCCTCAGTCACAGAAGTCTCAGGTGCTTTGAGCAGCGATCAGGACACGATCATCGTCAAAGGTGAAAACATGGAGCCATGGGAAACCTTCCCTGAAATCGATGACAGCTTCTGGTCAGAGGCACTCTCAGCTAACAATTCCAGCACCCCATTACTATTTCCAAAGGCCGAAAATGATGAAACAATATCCGAGTTTCCGATCACCGCCAACGATTCGGAGGAATTGGGTTTTACTTTTGGTCTAAACTTGGATGATGGCATGGAATTTTGGTATGATCTTTTCGTTAGAACTGGTCATGGGGGAACACCAGAATTACCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

266

Amino Acids

29.79

Weight (kDa)

5.08

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	8.7e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	2.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	675
AcsI	RAATTY	3 cut(s)	69, 734, 791
AcuI	CTGAAG	2 cut(s)	56, 78
AfaI	GTAC	1 cut(s)	394
AgsI	TTSAA	2 cut(s)	337, 400
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	11, 131, 230, 579, 602
AluI	AGCT	5 cut(s)	11, 131, 230, 579, 602
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	582
AoxI	GGCC	3 cut(s)	44, 185, 636
ApeKI	GCWGC	2 cut(s)	278, 504
ApoI	RAATTY	3 cut(s)	69, 734, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	363, 545, 664
BaeGI	GKGCMC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	290, 516
BccI	CCATC	3 cut(s)	22, 460, 719
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	279, 505
BlsI	GCNGC	2 cut(s)	280, 506
Bme1390I	CCNGG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 546
BmrFI	CCNGG	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
Bsa29I	ATCGAT	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	47, 548
BsaWI	WCCGGW	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	412, 766
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	47, 548
BseGI	GGATG	3 cut(s)	77, 84, 727
BseMII	CTCAG	3 cut(s)	489, 504, 612
BseNI	ACTGG	2 cut(s)	412, 766
BseRI	GAGGAG	1 cut(s)	463
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	290, 516
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	3 cut(s)	46, 187, 638
BshVI	ATCGAT	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	166, 188
BslFI	GGGAC	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	3 cut(s)	46, 187, 638
Bsp1286I	GDGCHC	2 cut(s)	13, 118
Bsp143I	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
Bsp19I	CCATGG	2 cut(s)	47, 548
BspACI	CCGC	1 cut(s)	675
BspANI	GGCC	3 cut(s)	46, 187, 638
BspCNI	CTCAG	3 cut(s)	488, 503, 611
BspDI	ATCGAT	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	45, 546
BsrI	ACTGG	2 cut(s)	412, 766
BssECI	CCNNGG	2 cut(s)	47, 548
BssMI	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
BssT1I	CCWWGG	2 cut(s)	47, 548
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	146, 216
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	114, 129
BstDEI	CTNAG	3 cut(s)	475, 490, 598
BstDSI	CCRYGG	2 cut(s)	47, 548
BstF5I	GGATG	3 cut(s)	77, 84, 727
BstKTI	GATC	6 cut(s)	67, 424, 511, 522, 672, 748
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 278, 599
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	290, 516
BstXI	CCANNNNNNTGG	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	46, 187, 638
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	2 cut(s)	47, 548
BtsCI	GGATG	3 cut(s)	77, 84, 727
Cac8I	GCNNGC	2 cut(s)	114, 129
CaiI	CAGNNNCTG	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	7 cut(s)	48, 101, 245, 541, 549, 730, 767
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	3 cut(s)	475, 490, 598
DpnI	GATC	6 cut(s)	66, 423, 510, 521, 671, 747
DpnII	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 548
Eco24I	GRGCYC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	56, 78
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	47, 548
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 548
FaeI	CATG	7 cut(s)	51, 104, 248, 544, 552, 733, 770
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	7 cut(s)	47, 100, 244, 540, 548, 729, 766
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	279, 505
FokI	GGATG	3 cut(s)	64, 71, 734
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	279, 505
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	2 cut(s)	279, 505
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	46, 187, 638
HapII	CCGG	2 cut(s)	166, 188
HgaI	GACGC	1 cut(s)	303
Hin1II	CATG	7 cut(s)	51, 104, 248, 544, 552, 733, 770
HinfI	GANTC	3 cut(s)	162, 345, 683
HpaII	CCGG	2 cut(s)	166, 188
HphI	GGTGA	3 cut(s)	363, 545, 664
Hpy188I	TCNGA	5 cut(s)	58, 589, 661, 669, 688
Hpy188III	TCNNGA	1 cut(s)	512
HpyAV	CCTTC	4 cut(s)	34, 91, 128, 568
HpyCH4V	TGCA	3 cut(s)	159, 244, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 278, 599
HpyF3I	CTNAG	3 cut(s)	475, 490, 598
Hsp92II	CATG	7 cut(s)	51, 104, 248, 544, 552, 733, 770
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
LmnI	GCTCC	2 cut(s)	16, 544
Lsp1109I	GCAGC	2 cut(s)	290, 516
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	3 cut(s)	257, 403, 478
MalI	GATC	6 cut(s)	66, 423, 510, 521, 671, 747
MboI	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
MboII	GAAGA	8 cut(s)	37, 49, 71, 74, 163, 230, 233, 447
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	13, 118
MlyI	GAGTC	2 cut(s)	156, 339
MnlI	CCTC	7 cut(s)	177, 194, 217, 481, 484, 583, 682
MseI	TTAA	1 cut(s)	237
MspI	CCGG	2 cut(s)	166, 188
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	250, 278, 599
NcoI	CCATGG	2 cut(s)	47, 548
NdeII	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
NlaIII	CATG	7 cut(s)	51, 104, 248, 544, 552, 733, 770
NlaIV	GGNNCC	2 cut(s)	45, 546
NmuCI	GTSAC	2 cut(s)	403, 478
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	280, 506
PleI	GAGTC	2 cut(s)	156, 339
PpsI	GAGTC	2 cut(s)	156, 339
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	45, 546
PspPI	GGNCC	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	582
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	279, 505
Sau3AI	GATC	6 cut(s)	64, 421, 508, 519, 669, 745
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	156, 339
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	13, 118
SsiI	CCGC	1 cut(s)	675
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	47, 548
TaqI	TCGA	1 cut(s)	570
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	403, 478
TseI	GCWGC	2 cut(s)	278, 504
Tsp45I	GTSAC	2 cut(s)	403, 478
TspDTI	ATGAA	3 cut(s)	73, 452, 663
XapI	RAATTY	3 cut(s)	69, 734, 791
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.