Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

7340675 .. 7342800

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG041100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTATATACATATATAAGCATATACTTTTGTACTTGCATAACAAAGTGCCAAACTCATGCACATAATTTAATCACATATATTTCTTTTATTTTCAGATGGTCAGCAATCGCAGCAAGATTGCCAGGAAGAACTGATAATGAAATAAAAAATGTATGGCATACCCACTTGAAGAAGAGACTACTCAAACATAATAACACCACATCACCAACATGTAGCACTTCGAATCTCACAAGCCGATATGCGGAGCCAGGAGATGTGAATTTTGAGAGTCCAACAAGTCATGCATCAATGTCACCACAACCAAGTTCTAGTGATGATTTTTCATCAGTCACTGAAGCCTCGGCCGCAACCGGTCAGAACATGATCAAAGATGAAAAGATCGAGTTGGATGCAACCTTCCTCGAAATCGATGACAGTTTCTGGTCAGAGGCACTTTCAGCTGACAATTCCGGAGACAACCAATTAGAGTTTTTGGAGGGCACAAATGATCAAGCACAACTGCAACTTCTACTCCCTTCAAACATTGATGATGGCATGGACTTTTGGTACGACCTTTTCATCAAAGCTGGCTATGGGGACACACCAGAACTACCAGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

201

Amino Acids

22.6

Weight (kDa)

4.55

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	33 - 57	9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	452
AciI	CCGC	2 cut(s)	245, 348
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	34, 551
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	172, 522
AjnI	CCWGG	2 cut(s)	124, 250
AluBI	AGCT	2 cut(s)	443, 569
AluI	AGCT	2 cut(s)	443, 569
Alw26I	GTCTC	2 cut(s)	172, 450
AlwNI	CAGNNNCTG	2 cut(s)	335, 423
Aor13HI	TCCGGA	1 cut(s)	452
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	262
AsiGI	ACCGGT	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	198, 288
AsuII	TTCGAA	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	93, 527
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	2 cut(s)	126, 252
BclI	TGATCA	2 cut(s)	366, 490
BcoDI	GTCTC	2 cut(s)	172, 450
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	114, 348
BlsI	GCNGC	2 cut(s)	115, 349
Bme1390I	CCNGG	2 cut(s)	126, 252
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	126, 252
BmsI	GCATC	2 cut(s)	296, 382
Bpu14I	TTCGAA	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	2 cut(s)	353, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	126, 252
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	485
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	411
BsiEI	CGRYCG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	354, 453
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	172, 450
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp13I	TCCGGA	1 cut(s)	452
Bsp143I	GATC	3 cut(s)	366, 381, 490
BspACI	CCGC	2 cut(s)	245, 348
BspANI	GGCC	1 cut(s)	347
BspDI	ATCGAT	1 cut(s)	411
BspEI	TCCGGA	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	366, 381, 490
Bst2UI	CCWGG	2 cut(s)	126, 252
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	3 cut(s)	369, 384, 493
BstMAI	GTCTC	2 cut(s)	172, 450
BstMBI	GATC	3 cut(s)	366, 381, 490
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 347, 440
BstNI	CCWGG	2 cut(s)	126, 252
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	124, 250
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	125
BstZI	CGGCCG	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	347
BsuTUI	ATCGAT	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	2 cut(s)	335, 423
Cfr10I	RCCGGY	1 cut(s)	353
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	33, 550
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	5 cut(s)	59, 213, 284, 364, 538
CviJI	RGCY	7 cut(s)	237, 250, 341, 347, 443, 569, 573
CviKI_1	RGCY	7 cut(s)	237, 250, 341, 347, 443, 569, 573
CviQI	GTAC	2 cut(s)	33, 550
DpnI	GATC	3 cut(s)	368, 383, 492
DpnII	GATC	3 cut(s)	366, 381, 490
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	345
Eco52I	CGGCCG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	124, 250
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	5 cut(s)	62, 216, 287, 367, 541
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	5 cut(s)	58, 212, 283, 363, 537
FbaI	TGATCA	2 cut(s)	366, 490
Fnu4HI	GCNGC	2 cut(s)	114, 348
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	114, 348
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	114, 348
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	2 cut(s)	354, 453
Hin1II	CATG	5 cut(s)	62, 216, 287, 367, 541
HinfI	GANTC	2 cut(s)	226, 271
HpaII	CCGG	2 cut(s)	354, 453
HphI	GGTGA	2 cut(s)	198, 288
Hpy188I	TCNGA	3 cut(s)	98, 360, 430
Hpy188III	TCNNGA	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	409, 528
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	39, 62, 287, 395, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 347, 440
Hsp92II	CATG	5 cut(s)	62, 216, 287, 367, 541
Kpn2I	TCCGGA	1 cut(s)	452
Ksp22I	TGATCA	2 cut(s)	366, 490
Kzo9I	GATC	3 cut(s)	366, 381, 490
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	9 cut(s)	111, 138, 237, 264, 367, 409, 466, 555, 600
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	2 cut(s)	296, 382
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	294, 331
MalI	GATC	3 cut(s)	368, 383, 492
MboI	GATC	3 cut(s)	366, 381, 490
MboII	GAAGA	3 cut(s)	141, 184, 187
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	4 cut(s)	67, 262, 448, 464
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	299, 369
MnlI	CCTC	4 cut(s)	352, 413, 424, 472
Mph1103I	ATGCAT	1 cut(s)	289
MroI	TCCGGA	1 cut(s)	452
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	354, 453
MspR9I	CCNGG	2 cut(s)	126, 252
MvaI	CCWGG	2 cut(s)	126, 252
MwoI	GCNNNNNNNGC	3 cut(s)	113, 347, 440
NdeII	GATC	3 cut(s)	366, 381, 490
NlaIII	CATG	5 cut(s)	62, 216, 287, 367, 541
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	294, 331
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	224
PciI	ACATGT	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	115, 349
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PscI	ACATGT	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	124, 250
PspGI	CCWGG	2 cut(s)	124, 250
PspN4I	GGNNCC	1 cut(s)	249
PstNI	CAGNNNCTG	2 cut(s)	335, 423
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	34, 551
RsaNI	GTAC	2 cut(s)	33, 550
RseI	CAYNNNNRTG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	114, 348
Sau3AI	GATC	3 cut(s)	366, 381, 490
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	126, 252
SduI	GDGCHC	1 cut(s)	485
SetI	ASST	4 cut(s)	401, 445, 558, 571
SfaNI	GCATC	2 cut(s)	296, 382
SfuI	TTCGAA	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	4 cut(s)	67, 262, 448, 464
SsiI	CCGC	2 cut(s)	245, 348
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	124, 250
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	4 cut(s)	224, 384, 405, 411
TasI	AATT	4 cut(s)	67, 262, 448, 464
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	294, 331
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	294, 331
TspDTI	ATGAA	4 cut(s)	156, 315, 390, 550
TspRI	CASTG	1 cut(s)	340
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.