Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

57616222 .. 57617604

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009777

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTGAGAGCTCCTTGCTGCGAGAAAATGGGGTTGAAGAAGGGGCCATGGACTACTGAAGAAGACCAGATTCTCATCTCCTACATCCAAAATTACGGTCATGGAAATTGGCGAGCTCTGCCCAAGCATGCTGGCTTGTTGAGATGTGGGAAGAGCTGTAGGCTCCGGTGGATAAACTATCTGCGGCCGGATATCAAGAGAGGAAACTTCACTAAAGAAGAAGAAGATGCCATCATCAATCTGCATGAAATGCTTGGTAACAGATGGTCAGCAATCGCAGCAAGATTACCAGGAAGAACTGATAATGAAATAAAAAATGTATGGCATACCCACTTGAAGAAGAGACTACTCAAACATAATAACACCACATCACCAACATGTAGCACTTCGAATCTCACAAGCCAATATGCGGAGCCAGAAGATGTGAATTTTGAGAGTCCAACAAGTCATGCATCAATGTCACCACAACCAAGTTCTAGTGATGATTTTTCATCAGTCACTGAAGCCTCGGCCACAACCGGTCAGAACATGATCAAAGGTGAAAAGATCGAGTTGGATGCAACCTTCCTCGAAATCGATGACAGTTTCTGGTCAGAGGCACTTTCAGCTGACAATTCCGGCGACAACCCATTAGACTTTTTGGAGGGCACAAATGATCAAGCACAACCCCAACTTCTACTCCCTTCAAACATTGATGATGGCATGGACTTTTGGTACCACCTTTTCATCAAAGCTGGCTATGGGGACACACCAGAACTACCGGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

257

Amino Acids

28.86

Weight (kDa)

5.1

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	5.5e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	3.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	714
AciI	CCGC	2 cut(s)	184, 410
AcoI	YGGCCR	2 cut(s)	185, 510
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	2 cut(s)	78, 522
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	377
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	37, 337, 687
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	11, 116, 156, 608, 734
AluI	AGCT	5 cut(s)	11, 116, 156, 608, 734
Alw21I	GWGCWC	2 cut(s)	13, 118
Alw26I	GTCTC	1 cut(s)	337
AlwNI	CAGNNNCTG	2 cut(s)	500, 588
AoxI	GGCC	3 cut(s)	44, 185, 510
ApeKI	GCWGC	2 cut(s)	18, 278
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AsiGI	ACCGGT	1 cut(s)	518
Asp718I	GGTACC	1 cut(s)	714
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	16, 363, 453, 551
AsuII	TTCGAA	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	714
BanII	GRGCYC	2 cut(s)	13, 118
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvI	GCAGC	2 cut(s)	5, 290
BccI	CCATC	3 cut(s)	239, 258, 692
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	531, 655
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	3 cut(s)	19, 185, 279
BlsI	GCNGC	3 cut(s)	20, 186, 280
Bme1390I	CCNGG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	45, 164, 414, 716
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	217, 461, 547
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	47, 507
BsaWI	WCCGGW	3 cut(s)	165, 518, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	47, 507
BseGI	GGATG	2 cut(s)	84, 562
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	650
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	5, 290
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	46, 187, 512
BshNI	GGYRCC	1 cut(s)	714
BshTI	ACCGGT	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiSI	CCGG	5 cut(s)	166, 188, 519, 618, 761
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	758
BsnI	GGCC	3 cut(s)	46, 187, 512
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	13, 118, 650
Bsp143I	GATC	3 cut(s)	531, 546, 655
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	184, 410
BspANI	GGCC	3 cut(s)	46, 187, 512
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	4 cut(s)	45, 164, 414, 716
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	47, 507
BssMI	GATC	3 cut(s)	531, 546, 655
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	98, 584
Bst6I	CTCTTC	2 cut(s)	146, 335
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	4 cut(s)	114, 129, 133, 736
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	84, 562
BstKTI	GATC	3 cut(s)	534, 549, 658
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	3 cut(s)	531, 546, 655
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 250, 278, 605
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	131, 381
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	5, 290
BstV2I	GAAGAC	1 cut(s)	69
BstZI	CGGCCG	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	46, 187, 512
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	84, 562
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	4 cut(s)	114, 129, 133, 736
CaiI	CAGNNNCTG	2 cut(s)	500, 588
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	715
CspAI	ACCGGT	1 cut(s)	518
CviAII	CATG	8 cut(s)	48, 101, 128, 245, 378, 449, 529, 703
CviQI	GTAC	1 cut(s)	715
DpnI	GATC	3 cut(s)	533, 548, 657
DpnII	GATC	3 cut(s)	531, 546, 655
EaeI	YGGCCR	2 cut(s)	185, 510
EagI	CGGCCG	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	146, 335
EarI	CTCTTC	2 cut(s)	146, 335
Ecl136II	GAGCTC	2 cut(s)	11, 116
EclXI	CGGCCG	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	13, 118
Eco32I	GATATC	1 cut(s)	193
Eco52I	CGGCCG	1 cut(s)	185
Eco53kI	GAGCTC	2 cut(s)	11, 116
Eco57I	CTGAAG	2 cut(s)	78, 522
EcoICRI	GAGCTC	2 cut(s)	11, 116
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	13, 118
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	8 cut(s)	51, 104, 131, 248, 381, 452, 532, 706
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	8 cut(s)	47, 100, 127, 244, 377, 448, 528, 702
FbaI	TGATCA	2 cut(s)	531, 655
Fnu4HI	GCNGC	3 cut(s)	19, 185, 279
FokI	GGATG	2 cut(s)	71, 569
FriOI	GRGCYC	2 cut(s)	13, 118
Fsp4HI	GCNGC	3 cut(s)	19, 185, 279
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	3 cut(s)	19, 185, 279
HaeIII	GGCC	3 cut(s)	46, 187, 512
HapII	CCGG	5 cut(s)	166, 188, 519, 618, 761
Hin1II	CATG	8 cut(s)	51, 104, 131, 248, 381, 452, 532, 706
HinfI	GANTC	3 cut(s)	70, 391, 436
HpaII	CCGG	5 cut(s)	166, 188, 519, 618, 761
HphI	GGTGA	4 cut(s)	16, 363, 453, 551
Hpy188I	TCNGA	2 cut(s)	525, 595
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	34, 574, 693
HpyCH4III	ACNGT	2 cut(s)	98, 584
HpyCH4V	TGCA	3 cut(s)	244, 452, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 250, 278, 605
Hsp92II	CATG	8 cut(s)	51, 104, 131, 248, 381, 452, 532, 706
KpnI	GGTACC	1 cut(s)	718
Ksp22I	TGATCA	2 cut(s)	531, 655
Kzo9I	GATC	3 cut(s)	531, 546, 655
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	16, 168, 412
Lsp1109I	GCAGC	2 cut(s)	5, 290
LweI	GCATC	3 cut(s)	217, 461, 547
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	257, 459, 496
MalI	GATC	3 cut(s)	533, 548, 657
MboI	GATC	3 cut(s)	531, 546, 655
MhlI	GDGCHC	3 cut(s)	13, 118, 650
MluCI	AATT	4 cut(s)	91, 106, 427, 613
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	2 cut(s)	464, 534
MnlI	CCTC	5 cut(s)	194, 517, 578, 589, 637
Mph1103I	ATGCAT	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	5 cut(s)	166, 188, 519, 618, 761
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	118, 250, 278, 605
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	531, 546, 655
NlaIII	CATG	8 cut(s)	51, 104, 131, 248, 381, 452, 532, 706
NlaIV	GGNNCC	4 cut(s)	45, 164, 414, 716
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	459, 496
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	131, 381
NspV	TTCGAA	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	70, 391
PinAI	ACCGGT	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	20, 186, 280
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PscI	ACATGT	1 cut(s)	377
Psp124BI	GAGCTC	2 cut(s)	13, 118
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	45, 164, 414, 716
PspPI	GGNCC	1 cut(s)	44
PstNI	CAGNNNCTG	2 cut(s)	500, 588
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	376
SacI	GAGCTC	2 cut(s)	13, 118
SapI	GCTCTTC	1 cut(s)	146
SatI	GCNGC	3 cut(s)	19, 185, 279
Sau3AI	GATC	3 cut(s)	531, 546, 655
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	13, 118, 650
SetI	ASST	8 cut(s)	13, 118, 158, 541, 566, 610, 723, 736
SfaNI	GCATC	3 cut(s)	217, 461, 547
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	376
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	91, 106, 427, 613
SsiI	CCGC	2 cut(s)	184, 410
SspMI	CTAG	1 cut(s)	477
SstI	GAGCTC	2 cut(s)	13, 118
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	98, 584
TaqI	TCGA	4 cut(s)	389, 549, 570, 576
TasI	AATT	4 cut(s)	91, 106, 427, 613
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	70, 391
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	459, 496
TseI	GCWGC	2 cut(s)	18, 278
Tsp45I	GTSAC	2 cut(s)	459, 496
TspDTI	ATGAA	4 cut(s)	261, 321, 480, 715
TspRI	CASTG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	2 cut(s)	131, 381
XspI	CTAG	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.