Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

6966445 .. 6968611

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG042800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTGAGAGCTCCTTGCTGCGAGAAAATGGGGTTGAAGAAGGGGCCATGGACTACTGAAGAAGACCAGATTCTCATCTCCTACATCCAAAATTACGGTCATGGAAATTGGCGAGCTCTGCCCAAGCATGCTGGTAATTACAATTTCCTCGCTATCTGGGTTTCTCTAGCTAGCCAGCTCCAAACAAAGTTATCGATGAGTTGTTTAAGCTTTCGACTCGTACTTTTTCGCTTATTGTTCTTTCTTTTAGGCTTGTTGAGATGTGGGAAGAGCTGCAGACTCCGGTGGATAAACTATCTGCGGCCGGATATCAAGAGAGGAAACTTCACTAGAGAAGAAGAAGATGCCATCATCAATCTGCATGAAATGCTTGGTAACAGATGGTCAGCAATCGCTGCAAGATTACCAGGAAGAACTGATAATGAAATAAAAAATGTATGGCATACCCACTTGAAGAAGAGACTACTCAAACATAATAACACCACATCACCAACATGTAGCACTTCGAATCTCACAAGCCAATATGCGGAGCCAGAAGATGTGAATTTTGAGAGTCCAACAAGTCATGCATCAATGTCACCACAACCAAGTTCTAGTGATGATTTTTCATCAGTCACTGAAACCTCGGCCGCAACCGGTCAGAACATGATCAAAGATGAAAAGATCGAGTTGGATGCAACCGTCCTCGAAATCGATGACAGTTTCTGGTCAGAGGCACTTTCAGCTGACAATTGCGGCGACAACCCATTAGAGTTTTTGGAGGGCACAAATGATCAAGCACAACCCCAACTTCTACTCCCTTCAAACATTGATGATGGCATGGACTTTTGGTACGACCTTTTCATCAAAGCTGGCTATGGGGACACACCAGAACTACCAGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

295

Amino Acids

33.45

Weight (kDa)

5.14

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 46	2e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 115	1.4e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	106 - 151	4.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	109 - 154	9.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	301, 527, 630, 735
AcoI	YGGCCR	2 cut(s)	302, 627
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	222, 833
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	494
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	37, 454, 804
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	8 cut(s)	11, 116, 170, 178, 210, 273, 725, 851
AluI	AGCT	8 cut(s)	11, 116, 170, 178, 210, 273, 725, 851
Alw21I	GWGCWC	2 cut(s)	13, 118
Alw26I	GTCTC	1 cut(s)	454
AlwNI	CAGNNNCTG	2 cut(s)	617, 705
AoxI	GGCC	3 cut(s)	44, 302, 627
ApeKI	GCWGC	3 cut(s)	18, 273, 395
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AsiGI	ACCGGT	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	16, 480, 570
AsuII	TTCGAA	1 cut(s)	506
AsuNHI	GCTAGC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	767
BanII	GRGCYC	2 cut(s)	13, 118
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvI	GCAGC	3 cut(s)	5, 260, 382
BccI	CCATC	3 cut(s)	356, 375, 809
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	2 cut(s)	648, 772
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	4 cut(s)	167, 171, 330, 594
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	6 cut(s)	19, 274, 302, 396, 630, 736
BlsI	GCNGC	6 cut(s)	20, 275, 303, 397, 631, 737
Bme1390I	CCNGG	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 531
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	334, 578, 664
BmtI	GCTAGC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	506
Bsa29I	ATCGAT	2 cut(s)	194, 693
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	47, 624
BsaWI	WCCGGW	2 cut(s)	282, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	635
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	2 cut(s)	194, 693
BseDI	CCNNGG	2 cut(s)	47, 624
BseGI	GGATG	2 cut(s)	84, 679
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseSI	GKGCMC	1 cut(s)	767
BseX3I	CGGCCG	2 cut(s)	302, 627
BseXI	GCAGC	3 cut(s)	5, 260, 382
Bsh1285I	CGRYCG	2 cut(s)	305, 630
BshFI	GGCC	3 cut(s)	46, 304, 629
BshTI	ACCGGT	1 cut(s)	635
BshVI	ATCGAT	2 cut(s)	194, 693
BsiEI	CGRYCG	2 cut(s)	305, 630
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiSI	CCGG	3 cut(s)	283, 305, 636
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	3 cut(s)	46, 304, 629
Bsp119I	TTCGAA	1 cut(s)	506
Bsp1286I	GDGCHC	3 cut(s)	13, 118, 767
Bsp143I	GATC	3 cut(s)	648, 663, 772
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	4 cut(s)	301, 527, 630, 735
BspANI	GGCC	3 cut(s)	46, 304, 629
BspDI	ATCGAT	2 cut(s)	194, 693
BspLI	GGNNCC	2 cut(s)	45, 531
BspMAI	CTGCAG	1 cut(s)	278
BspOI	GCTAGC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	635
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	47, 624
BssMI	GATC	3 cut(s)	648, 663, 772
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	98, 682, 701
Bst6I	CTCTTC	2 cut(s)	263, 452
BstAPI	GCANNNNNTGC	2 cut(s)	367, 395
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	5 cut(s)	114, 129, 172, 176, 853
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	84, 679
BstKTI	GATC	3 cut(s)	651, 666, 775
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	3 cut(s)	648, 663, 772
BstMCI	CGRYCG	2 cut(s)	305, 630
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 367, 395, 722
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	2 cut(s)	131, 498
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	767
BstV1I	GCAGC	3 cut(s)	5, 260, 382
BstV2I	GAAGAC	1 cut(s)	69
BstZI	CGGCCG	2 cut(s)	302, 627
Bsu15I	ATCGAT	2 cut(s)	194, 693
BsuRI	GGCC	3 cut(s)	46, 304, 629
BsuTUI	ATCGAT	2 cut(s)	194, 693
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	84, 679
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	5 cut(s)	114, 129, 172, 176, 853
CaiI	CAGNNNCTG	2 cut(s)	617, 705
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	2 cut(s)	194, 693
Csp6I	GTAC	2 cut(s)	221, 832
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	8 cut(s)	48, 101, 128, 362, 495, 566, 646, 820
CviQI	GTAC	2 cut(s)	221, 832
DpnI	GATC	3 cut(s)	650, 665, 774
DpnII	GATC	3 cut(s)	648, 663, 772
EaeI	YGGCCR	2 cut(s)	302, 627
EagI	CGGCCG	2 cut(s)	302, 627
Eam1104I	CTCTTC	2 cut(s)	263, 452
EarI	CTCTTC	2 cut(s)	263, 452
Ecl136II	GAGCTC	2 cut(s)	11, 116
EclXI	CGGCCG	2 cut(s)	302, 627
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	13, 118
Eco32I	GATATC	1 cut(s)	310
Eco52I	CGGCCG	2 cut(s)	302, 627
Eco53kI	GAGCTC	2 cut(s)	11, 116
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	2 cut(s)	11, 116
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	2 cut(s)	13, 118
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	8 cut(s)	51, 104, 131, 365, 498, 569, 649, 823
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	8 cut(s)	47, 100, 127, 361, 494, 565, 645, 819
FbaI	TGATCA	2 cut(s)	648, 772
Fnu4HI	GCNGC	6 cut(s)	19, 274, 302, 396, 630, 736
FokI	GGATG	2 cut(s)	71, 686
FriOI	GRGCYC	2 cut(s)	13, 118
Fsp4HI	GCNGC	6 cut(s)	19, 274, 302, 396, 630, 736
FspBI	CTAG	4 cut(s)	167, 171, 330, 594
GluI	GCNGC	6 cut(s)	19, 274, 302, 396, 630, 736
HaeIII	GGCC	3 cut(s)	46, 304, 629
HapII	CCGG	3 cut(s)	283, 305, 636
Hin1II	CATG	8 cut(s)	51, 104, 131, 365, 498, 569, 649, 823
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	5 cut(s)	70, 216, 279, 508, 553
HpaII	CCGG	3 cut(s)	283, 305, 636
HphI	GGTGA	3 cut(s)	16, 480, 570
Hpy188I	TCNGA	2 cut(s)	642, 712
Hpy188III	TCNNGA	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	34, 810
HpyCH4III	ACNGT	3 cut(s)	98, 682, 701
HpyCH4V	TGCA	5 cut(s)	276, 361, 398, 569, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 367, 395, 722
Hsp92II	CATG	8 cut(s)	51, 104, 131, 365, 498, 569, 649, 823
Ksp22I	TGATCA	2 cut(s)	648, 772
Kzo9I	GATC	3 cut(s)	648, 663, 772
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	3 cut(s)	16, 183, 529
Lsp1109I	GCAGC	3 cut(s)	5, 260, 382
LweI	GCATC	3 cut(s)	334, 578, 664
MaeI	CTAG	4 cut(s)	167, 171, 330, 594
MaeIII	GTNAC	3 cut(s)	374, 576, 613
MalI	GATC	3 cut(s)	650, 665, 774
MboI	GATC	3 cut(s)	648, 663, 772
MfeI	CAATTG	1 cut(s)	730
MhlI	GDGCHC	3 cut(s)	13, 118, 767
MluCI	AATT	6 cut(s)	91, 106, 136, 142, 544, 730
MlyI	GAGTC	3 cut(s)	210, 273, 562
MmeI	TCCRAC	2 cut(s)	581, 651
MnlI	CCTC	6 cut(s)	158, 311, 634, 695, 706, 754
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	493
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	3 cut(s)	283, 305, 636
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	118, 367, 395, 722
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	648, 663, 772
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	8 cut(s)	51, 104, 131, 365, 498, 569, 649, 823
NlaIV	GGNNCC	2 cut(s)	45, 531
NmeAIII	GCCGAG	1 cut(s)	605
NmuCI	GTSAC	2 cut(s)	576, 613
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	2 cut(s)	131, 498
NspV	TTCGAA	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	70, 508
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	6 cut(s)	20, 275, 303, 397, 631, 737
PleI	GAGTC	3 cut(s)	210, 273, 561
PpsI	GAGTC	3 cut(s)	210, 273, 561
PscI	ACATGT	1 cut(s)	494
Psp124BI	GAGCTC	2 cut(s)	13, 118
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	45, 531
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	278
PstNI	CAGNNNCTG	2 cut(s)	617, 705
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	2 cut(s)	222, 833
RsaNI	GTAC	2 cut(s)	221, 832
RseI	CAYNNNNRTG	1 cut(s)	493
SacI	GAGCTC	2 cut(s)	13, 118
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	6 cut(s)	19, 274, 302, 396, 630, 736
Sau3AI	GATC	3 cut(s)	648, 663, 772
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	3 cut(s)	210, 273, 562
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	3 cut(s)	13, 118, 767
SfaNI	GCATC	3 cut(s)	334, 578, 664
SfcI	CTRYAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	493
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	6 cut(s)	91, 106, 136, 142, 544, 730
SsiI	CCGC	4 cut(s)	301, 527, 630, 735
SspMI	CTAG	4 cut(s)	167, 171, 330, 594
SstI	GAGCTC	2 cut(s)	13, 118
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	98, 682, 701
TaqI	TCGA	6 cut(s)	194, 214, 506, 666, 687, 693
TasI	AATT	6 cut(s)	91, 106, 136, 142, 544, 730
TauI	GCSGC	3 cut(s)	304, 632, 738
TfiI	GAWTC	2 cut(s)	70, 508
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	2 cut(s)	576, 613
TseI	GCWGC	3 cut(s)	18, 273, 395
Tsp45I	GTSAC	2 cut(s)	576, 613
TspDTI	ATGAA	5 cut(s)	378, 438, 597, 672, 832
TspRI	CASTG	1 cut(s)	622
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	2 cut(s)	131, 498
XspI	CTAG	4 cut(s)	167, 171, 330, 594
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.