Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

17872236 .. 17874459

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTGAGAGCTCCGTGCTGCGAGAAGATGGGGTTGAAGAAAGGGCCGTGGACTCCCGAAGAGGATCACGTTCTCGTCTCTTACATTCAGCAGTACGGCCATGGCAACTGGAGGGCGCTTCCCAAACTCGCCGGGTTGTTGAGGTGTGGGAAGAGTTGCAGGCTCCGGTGGACGAATTATCTGAGGCCGGATATCAAGAGAGGGAATTTTAGCAGGGAGGAAGAGGAGGCCATCATCAATTTGCATCAAATGTTGGGGAATAGATGGTCAGCAATTGCAGCAAGATTGCCGGGTCGCACAGACAATGAAATAAAAAACGTTTGGCACACCCACTTGAAAAAGAAGCTCAACATCAAGCAGAGTCCTACCACGCCAGAAGCACTAGGTCAAGTATCCGAACCCGAATTACCTAAACCCGAAGATGCTTCATGTCATGCAAAATCCGAAAGCTTCGAATATGGCCCGGTTTCTCCACCTCAATGTACTACTTCAAGTGCTGATGATACTTCCTCCTTCACCACCAGTGAGAACAACAACAGTAGTAGTGCTAACATGGGCATGAACGTCGACTACGAAGTGAGTTTGCCCGAAGCAGACGAGAGTTTTTGGTCAGAAGTACTATCAGCTGATCATAACAGTCCCAATGAGTTAGTGAGTAGCCATTTTGGTGATCAGGCGATTGGTGCAGCTGAAAATCCACAAGTGAACACAAGTATGGATTATGGTTTTAGCGGCTCAAATATGTACGAAAACTGCATGGATTTTTGGTACGATGTTTTCACAAGAGCGGGGGAAATTCCAGAATTGCTAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

273

Amino Acids

30.45

Weight (kDa)

5.07

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	6.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	788
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	732, 788
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	205, 795
AfaI	GTAC	5 cut(s)	95, 484, 618, 746, 770
AgsI	TTSAA	3 cut(s)	37, 337, 492
AluBI	AGCT	5 cut(s)	11, 346, 450, 626, 689
AluI	AGCT	5 cut(s)	11, 346, 450, 626, 689
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	5 cut(s)	44, 97, 185, 228, 460
ApeKI	GCWGC	3 cut(s)	18, 278, 686
ApoI	RAATTY	2 cut(s)	205, 795
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	44, 461
AsuC2I	CCSGG	3 cut(s)	133, 291, 464
AsuHPI	GGTGA	3 cut(s)	16, 508, 680
AsuII	TTCGAA	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	5, 290, 698
BccI	CCATC	3 cut(s)	22, 239, 258
BceAI	ACGGC	2 cut(s)	31, 112
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	2 cut(s)	628, 670
BcnI	CCSGG	3 cut(s)	133, 291, 464
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	383, 809
BfoI	RGCGCY	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	4 cut(s)	19, 279, 687, 733
BlsI	GCNGC	4 cut(s)	20, 280, 688, 734
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	3 cut(s)	133, 291, 464
BmgT120I	GGNCC	2 cut(s)	44, 461
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	3 cut(s)	133, 291, 464
BmsI	GCATC	2 cut(s)	253, 412
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	453
BpuMI	CCSGG	3 cut(s)	133, 291, 464
BsaJI	CCNNGG	2 cut(s)	47, 100
BsaWI	WCCGGW	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	113, 522
BseDI	CCNNGG	2 cut(s)	47, 100
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	113, 522
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	5, 290, 698
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	5 cut(s)	46, 99, 187, 230, 462
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	5 cut(s)	132, 166, 188, 290, 464
BslFI	GGGAC	1 cut(s)	624
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	5 cut(s)	46, 99, 187, 230, 462
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	64, 628, 670
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	2 cut(s)	732, 788
BspANI	GGCC	5 cut(s)	46, 99, 187, 230, 462
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	453
BsrBI	CCGCTC	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	113, 522
BssECI	CCNNGG	2 cut(s)	47, 100
BssMI	GATC	3 cut(s)	64, 628, 670
BssT1I	CCWWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	539, 638
Bst6I	CTCTTC	3 cut(s)	54, 146, 216
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	2 cut(s)	47, 100
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	67, 631, 673
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	64, 628, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 683
BstSCI	CCNGG	3 cut(s)	131, 289, 462
BstV1I	GCAGC	3 cut(s)	5, 290, 698
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	5 cut(s)	46, 99, 187, 230, 462
BtgI	CCRYGG	2 cut(s)	47, 100
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	44, 461
Csp6I	GTAC	5 cut(s)	94, 483, 617, 745, 769
CviAII	CATG	6 cut(s)	101, 429, 434, 553, 559, 757
CviQI	GTAC	5 cut(s)	94, 483, 617, 745, 769
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	3 cut(s)	66, 630, 672
DpnII	GATC	3 cut(s)	64, 628, 670
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	54, 146, 216
EarI	CTCTTC	3 cut(s)	54, 146, 216
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	6 cut(s)	104, 432, 437, 556, 562, 760
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	6 cut(s)	100, 428, 433, 552, 558, 756
FauI	CCCGC	1 cut(s)	781
FbaI	TGATCA	2 cut(s)	628, 670
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	19, 279, 687, 733
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	19, 279, 687, 733
FspBI	CTAG	2 cut(s)	383, 809
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	19, 279, 687, 733
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	5 cut(s)	46, 99, 187, 230, 462
HapII	CCGG	5 cut(s)	132, 166, 188, 290, 464
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	6 cut(s)	104, 432, 437, 556, 562, 760
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	2 cut(s)	52, 361
HpaII	CCGG	5 cut(s)	132, 166, 188, 290, 464
HphI	GGTGA	3 cut(s)	16, 508, 680
Hpy166II	GTNNAC	4 cut(s)	51, 171, 568, 706
Hpy188I	TCNGA	4 cut(s)	183, 397, 445, 613
Hpy188III	TCNNGA	3 cut(s)	56, 196, 800
Hpy8I	GTNNAC	4 cut(s)	51, 171, 568, 706
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	2 cut(s)	539, 638
HpyCH4IV	ACGT	3 cut(s)	69, 318, 564
HpyCH4V	TGCA	6 cut(s)	159, 244, 278, 437, 686, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 683
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	3 cut(s)	69, 318, 564
Hsp92II	CATG	6 cut(s)	104, 432, 437, 556, 562, 760
HspAI	GCGC	1 cut(s)	116
Ksp22I	TGATCA	2 cut(s)	628, 670
Kzo9I	GATC	3 cut(s)	64, 628, 670
LmnI	GCTCC	2 cut(s)	16, 168
Lsp1109I	GCAGC	3 cut(s)	5, 290, 698
LweI	GCATC	2 cut(s)	253, 412
MaeI	CTAG	2 cut(s)	383, 809
MaeII	ACGT	3 cut(s)	69, 318, 564
MalI	GATC	3 cut(s)	66, 630, 672
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	3 cut(s)	64, 628, 670
MboII	GAAGA	6 cut(s)	37, 49, 71, 163, 233, 431
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	7 cut(s)	175, 205, 238, 273, 404, 795, 803
MlyI	GAGTC	2 cut(s)	46, 370
MslI	CAYNNNNRTG	4 cut(s)	478, 557, 666, 713
MspA1I	CMGCKG	2 cut(s)	626, 689
MspI	CCGG	5 cut(s)	132, 166, 188, 290, 464
MspR9I	CCNGG	3 cut(s)	133, 291, 464
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	278, 683
NciI	CCSGG	3 cut(s)	133, 291, 464
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	64, 628, 670
NlaIII	CATG	6 cut(s)	104, 432, 437, 556, 562, 760
NlaIV	GGNNCC	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	20, 280, 688, 734
PleI	GAGTC	2 cut(s)	46, 369
PpsI	GAGTC	2 cut(s)	46, 369
Psp124BI	GAGCTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	44, 461
PsrI	GAACNNNNNNTAC	4 cut(s)	390, 422, 554, 586
PvuII	CAGCTG	2 cut(s)	626, 689
RsaI	GTAC	5 cut(s)	95, 484, 618, 746, 770
RsaNI	GTAC	5 cut(s)	94, 483, 617, 745, 769
RseI	CAYNNNNRTG	4 cut(s)	478, 557, 666, 713
SacI	GAGCTC	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	566
SatI	GCNGC	4 cut(s)	19, 279, 687, 733
Sau3AI	GATC	3 cut(s)	64, 628, 670
Sau96I	GGNCC	2 cut(s)	44, 461
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	2 cut(s)	46, 370
ScrFI	CCNGG	3 cut(s)	133, 291, 464
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	253, 412
SfuI	TTCGAA	1 cut(s)	453
SmiMI	CAYNNNNRTG	4 cut(s)	478, 557, 666, 713
Sse9I	AATT	7 cut(s)	175, 205, 238, 273, 404, 795, 803
SsiI	CCGC	2 cut(s)	732, 788
SspMI	CTAG	2 cut(s)	383, 809
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	131, 289, 462
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	539, 638
TaiI	ACGT	3 cut(s)	72, 321, 567
TaqI	TCGA	2 cut(s)	453, 567
TasI	AATT	7 cut(s)	175, 205, 238, 273, 404, 795, 803
TatI	WGTACW	2 cut(s)	482, 616
TauI	GCSGC	1 cut(s)	735
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	3 cut(s)	18, 278, 686
TspDTI	ATGAA	3 cut(s)	321, 417, 575
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	2 cut(s)	205, 795
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	2 cut(s)	383, 809
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.