Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

27718674 .. 27720425

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1184100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTTAGTGCTCCTTGCTGCCAGAAGATGGGGTTGAAGAAAGGGCCTTGGACTGCAGAAGAAGATCACATACTTGTCACTTACATTCAGCAGCATGGCCATGGAAACTGGAGAGCTCTCCCAAAACTAGCTGGTTTGTTACGGTGTGGAAAGAGTTGTAGACTCAGATGGACAAACTACTTGAGGCCAGATATCAAAAGAGGGAATTTTAGCAGGGAAGAAGAAGACGCCATCATCAACTTACATCAAATGTTAGGAAATAGATGGTCACAAATCGCAGCGAGATTGCCTGGTCGCACAGACAATGAAATAAAAAATGTATGGCACACCCATTTAAAAAAAAAGCTGAAATCGAACCACACCGAACCAAATTCTAGGGCACGTTTCTACTCTAGAAAATCGGAGCAAGAGCTAGAGCCCATTGATGATTCTTCATATTGTGCAAAATCTGATAGCTTGGATTGTGTGCCTGTTTCGCCGGCTCGATGTACTTCAAATAACACGTCATCTGTCACGACCAACGACTACGACAACAACAACAATAGTAACAATGTATGTGTGACATTTGACGATTACCAAGCAAATTTACCAGAACCGGATGATAGTTTTTGGTCGGAAGTTTTGTCAACTGAGTATTATGAAGAGACGGTGAATGAGTTTCAGGCATTTGGTGGTGACCCACAAGTGAATATGGGGCCTACTGATGGTGGTTTTAGTTTAGACATGTACAATGACAACAACATGGACTTTTGGTTTAATATATTCTCAGGAGCTGAGGAAATTCCAGAATTGTTAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

268

Amino Acids

30.46

Weight (kDa)

5.12

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.7e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	8.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	5 cut(s)	205, 370, 583, 780, 798
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	2 cut(s)	490, 728
AfiI	CCNNNNNNNGG	2 cut(s)	28, 704
AflIII	ACRYGT	2 cut(s)	501, 723
AgsI	TTSAA	2 cut(s)	37, 495
AjiI	CACGTC	1 cut(s)	504
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	116, 131, 346, 412, 456, 773
AluI	AGCT	6 cut(s)	116, 131, 346, 412, 456, 773
Alw21I	GWGCWC	2 cut(s)	13, 118
Alw26I	GTCTC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	4 cut(s)	44, 97, 185, 695
ApeKI	GCWGC	3 cut(s)	18, 91, 278
ApoI	RAATTY	5 cut(s)	205, 370, 583, 780, 798
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspS9I	GGNCC	2 cut(s)	44, 695
AsuHPI	GGTGA	2 cut(s)	661, 686
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	118, 420
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	5, 103, 290
BccI	CCATC	5 cut(s)	22, 162, 239, 258, 698
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	4 cut(s)	128, 375, 393, 413
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	3 cut(s)	19, 92, 279
BlsI	GCNGC	3 cut(s)	20, 93, 280
Bme1390I	CCNGG	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	44, 695
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	47, 100
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 704
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	47, 100
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	2 cut(s)	28, 704
BseMII	CTCAG	4 cut(s)	178, 621, 765, 780
BseNI	ACTGG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	5, 103, 290
BshFI	GGCC	4 cut(s)	46, 99, 187, 697
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiSI	CCGG	2 cut(s)	479, 596
BslI	CCNNNNNNNGG	2 cut(s)	28, 704
BsmAI	GTCTC	1 cut(s)	638
BsmBI	CGTCTC	1 cut(s)	638
BsnI	GGCC	4 cut(s)	46, 99, 187, 697
Bsp1286I	GDGCHC	4 cut(s)	13, 118, 382, 420
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	4 cut(s)	46, 99, 187, 697
BspCNI	CTCAG	4 cut(s)	177, 622, 766, 779
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	478
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	47, 100
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	47, 100
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	144, 649
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	726
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	164, 630, 766, 774
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	604
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	727
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	5, 103, 290
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	46, 99, 187, 697
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	44, 695
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	489, 727
CviAII	CATG	4 cut(s)	95, 101, 724, 742
CviQI	GTAC	2 cut(s)	489, 727
DdeI	CTNAG	4 cut(s)	164, 630, 766, 774
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	47, 100
Eco24I	GRGCYC	2 cut(s)	118, 420
Eco32I	GATATC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	44, 695
EcoO65I	GGTNACC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 100
EcoT38I	GRGCYC	2 cut(s)	118, 420
ErhI	CCWWGG	2 cut(s)	47, 100
Esp3I	CGTCTC	1 cut(s)	638
FaeI	CATG	4 cut(s)	98, 104, 727, 745
FatI	CATG	4 cut(s)	94, 100, 723, 741
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	19, 92, 279
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	2 cut(s)	118, 420
Fsp4HI	GCNGC	3 cut(s)	19, 92, 279
FspBI	CTAG	4 cut(s)	128, 375, 393, 413
GluI	GCNGC	3 cut(s)	19, 92, 279
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	4 cut(s)	46, 99, 187, 697
HapII	CCGG	2 cut(s)	479, 596
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	98, 104, 727, 745
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	2 cut(s)	162, 428
HpaII	CCGG	2 cut(s)	479, 596
HphI	GGTGA	2 cut(s)	661, 686
Hpy166II	GTNNAC	2 cut(s)	161, 627
Hpy188I	TCNGA	4 cut(s)	167, 403, 451, 616
Hpy188III	TCNNGA	4 cut(s)	393, 514, 768, 785
Hpy8I	GTNNAC	2 cut(s)	161, 627
HpyCH4III	ACNGT	2 cut(s)	144, 649
HpyCH4IV	ACGT	2 cut(s)	382, 503
HpyCH4V	TGCA	2 cut(s)	56, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	4 cut(s)	164, 630, 766, 774
HpySE526I	ACGT	2 cut(s)	382, 503
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	98, 104, 727, 745
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	3 cut(s)	16, 403, 770
Lsp1109I	GCAGC	3 cut(s)	5, 103, 290
MaeI	CTAG	4 cut(s)	128, 375, 393, 413
MaeII	ACGT	2 cut(s)	382, 503
MaeIII	GTNAC	7 cut(s)	76, 138, 267, 511, 545, 559, 674
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	9 cut(s)	37, 49, 71, 74, 230, 233, 236, 423, 653
MhlI	GDGCHC	4 cut(s)	13, 118, 382, 420
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	6 cut(s)	205, 370, 583, 780, 788, 798
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	3 cut(s)	177, 194, 769
Mox20I	TGGCCA	1 cut(s)	99
MroNI	GCCGGC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	335, 756
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	479, 596
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	475
NaeI	GCCGGC	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	64
NgoMIV	GCCGGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	98, 104, 727, 745
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	5 cut(s)	76, 267, 511, 559, 674
NspI	RCATGY	1 cut(s)	727
PciI	ACATGT	1 cut(s)	723
PdiI	GCCGGC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	20, 93, 280
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PscI	ACATGT	1 cut(s)	723
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	2 cut(s)	44, 695
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	490, 728
RsaNI	GTAC	2 cut(s)	489, 727
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	335, 756
SatI	GCNGC	3 cut(s)	19, 92, 279
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	44, 695
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	4 cut(s)	13, 118, 382, 420
SetI	ASST	8 cut(s)	118, 133, 348, 385, 414, 458, 506, 775
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	6 cut(s)	205, 370, 583, 780, 788, 798
SspMI	CTAG	4 cut(s)	128, 375, 393, 413
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	47, 100
TaaI	ACNGT	2 cut(s)	144, 649
TaiI	ACGT	2 cut(s)	385, 506
TaqI	TCGA	2 cut(s)	353, 484
TasI	AATT	6 cut(s)	205, 370, 583, 780, 788, 798
TatI	WGTACW	2 cut(s)	488, 726
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	335, 756
Tru9I	TTAA	2 cut(s)	335, 756
TseFI	GTSAC	5 cut(s)	76, 267, 511, 559, 674
TseI	GCWGC	3 cut(s)	18, 91, 278
Tsp45I	GTSAC	5 cut(s)	76, 267, 511, 559, 674
TspDTI	ATGAA	3 cut(s)	321, 423, 654
Van91I	CCANNNNNTGG	1 cut(s)	28
XapI	RAATTY	5 cut(s)	205, 370, 583, 780, 798
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	4 cut(s)	128, 375, 393, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.