Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

18757437 .. 18760011

Gene Structure 2575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGTTGAAGAAAGGGCCGTGGACGCCGGAGGAGGATCACGTACTCGTCTCTTACATCCAGCGGTACGGCCATGGAAACTGGAGGGCGCTTCCCAAACTGGCAGGGTTGTTGAGGTGTGGGAAGAGTTGCAGGCTGCGGTGGACGAACTACCTGAGGCCGGATATCAAGAGAGGGAATTTTAGCAGGGAGGAAGAAGAGGCCATCATCAACTTGCATCAAATGTTGGGGAATAGATGGTCAGCAATTGCAGCAAGATTGCCGGGTCGCACAGACAATGAAATAAAAAACGTTTGGCACACCCACTTGAAAAAGAAGCTCAGCCCCAAGCAGAATTCTACCACACCAGAAGCACAAGGTCAGGAATCCGAACCCGAACCCGAACCCAAACCTGAAAATACTTCATGTTATGCAAAATCCGAAAGCTTCGAATATGGGCCGGTTTCCCCACCTCAATGTACTACGAGTGCTGATGACACCTCCTCATTCACCACCAGTGAGAACAATACCTGCAGTGCTAATATGGGCATGAAAGTCGACTACGAAGTGAATTTACCCCAAGCGGACGAGAGCTTTTGGTCAGAAGTACTATCAGCTGATCAGAACTGTTCCAACGAGAGGGTGAGTTGCGATTTTGATCAGGCAATTGGTGCAGCAGCAGATCCACAAGTGAACGCAACTGTGGAAGTTCCTGTCGATTTTGGGTTTAGTGGCTCAAATATGTACGATAACTGCATGGATTTTTGGTACAACGTTTTCACAACAGCAGGGGAAATTTCAGAGTTGCTAGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

266

Amino Acids

29.73

Weight (kDa)

4.88

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	1.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 67	5.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	58 - 103	4.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 108	6.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	3 cut(s)	64, 139, 563
AclI	AACGTT	2 cut(s)	291, 753
AclWI	GGATC	2 cut(s)	45, 656
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	4 cut(s)	178, 334, 550, 774
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	6 cut(s)	45, 68, 460, 588, 725, 749
AfiI	CCNNNNNNNGG	2 cut(s)	160, 618
AgsI	TTSAA	2 cut(s)	10, 310
AluBI	AGCT	4 cut(s)	319, 426, 573, 596
AluI	AGCT	4 cut(s)	319, 426, 573, 596
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	45, 656
AoxI	GGCC	5 cut(s)	17, 70, 158, 201, 437
ApeKI	GCWGC	4 cut(s)	136, 251, 653, 656
ApoI	RAATTY	4 cut(s)	178, 334, 550, 774
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	17, 437
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	481, 634
AsuII	TTCGAA	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
BbvI	GCAGC	4 cut(s)	123, 263, 665, 668
BccI	CCATC	2 cut(s)	212, 231
BceAI	ACGGC	2 cut(s)	4, 85
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BclI	TGATCA	2 cut(s)	598, 637
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	1 cut(s)	511
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	4 cut(s)	137, 252, 654, 657
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	4 cut(s)	138, 253, 655, 658
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	17, 437
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	20, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 618
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	3 cut(s)	86, 105, 495
Bse21I	CCTNAGG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	20, 73
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	160, 618
BseMII	CTCAG	2 cut(s)	146, 334
BseNI	ACTGG	3 cut(s)	86, 105, 495
BseRI	GAGGAG	2 cut(s)	47, 472
BseXI	GCAGC	4 cut(s)	123, 263, 665, 668
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	5 cut(s)	19, 72, 160, 203, 439
BsiSI	CCGG	4 cut(s)	29, 161, 263, 440
BslI	CCNNNNNNNGG	2 cut(s)	160, 618
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	5 cut(s)	19, 72, 160, 203, 439
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	4 cut(s)	37, 598, 637, 661
Bsp1720I	GCTNAGC	1 cut(s)	320
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	3 cut(s)	64, 139, 563
BspANI	GGCC	5 cut(s)	19, 72, 160, 203, 439
BspCNI	CTCAG	2 cut(s)	147, 333
BspMAI	CTGCAG	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	45, 656
BspT104I	TTCGAA	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	3 cut(s)	86, 105, 495
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	20, 73
BssMI	GATC	4 cut(s)	37, 598, 637, 661
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	608, 682
Bst6I	CTCTTC	2 cut(s)	119, 192
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	155, 320
BstDSI	CCRYGG	2 cut(s)	20, 73
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	4 cut(s)	40, 601, 640, 664
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	37, 598, 637, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 251, 650
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	511
BstV1I	GCAGC	4 cut(s)	123, 263, 665, 668
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	155
BsuRI	GGCC	5 cut(s)	19, 72, 160, 203, 439
BtgI	CCRYGG	2 cut(s)	20, 73
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	502, 520
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	17, 437
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	6 cut(s)	44, 67, 459, 587, 724, 748
CviAII	CATG	4 cut(s)	74, 405, 529, 736
CviQI	GTAC	6 cut(s)	44, 67, 459, 587, 724, 748
DdeI	CTNAG	2 cut(s)	155, 320
DpnI	GATC	4 cut(s)	39, 600, 639, 663
DpnII	GATC	4 cut(s)	37, 598, 637, 661
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	119, 192
EarI	CTCTTC	2 cut(s)	119, 192
Eco130I	CCWWGG	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	4 cut(s)	77, 408, 532, 739
FaiI	YATR	8 cut(s)	75, 406, 411, 435, 524, 530, 722, 737
FatI	CATG	4 cut(s)	73, 404, 528, 735
FbaI	TGATCA	2 cut(s)	598, 637
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	137, 252, 654, 657
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	137, 252, 654, 657
FspBI	CTAG	1 cut(s)	788
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	4 cut(s)	137, 252, 654, 657
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	5 cut(s)	19, 72, 160, 203, 439
HapII	CCGG	4 cut(s)	29, 161, 263, 440
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	77, 408, 532, 739
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	4 cut(s)	29, 161, 263, 440
HphI	GGTGA	2 cut(s)	481, 634
Hpy166II	GTNNAC	4 cut(s)	24, 144, 538, 673
Hpy188I	TCNGA	5 cut(s)	370, 421, 583, 603, 781
Hpy188III	TCNNGA	2 cut(s)	169, 362
Hpy8I	GTNNAC	4 cut(s)	24, 144, 538, 673
HpyCH4III	ACNGT	2 cut(s)	608, 682
HpyCH4IV	ACGT	3 cut(s)	42, 291, 753
HpyCH4V	TGCA	7 cut(s)	132, 217, 251, 413, 513, 653, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 251, 650
HpyF3I	CTNAG	2 cut(s)	155, 320
HpySE526I	ACGT	3 cut(s)	42, 291, 753
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	77, 408, 532, 739
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	2 cut(s)	598, 637
Kzo9I	GATC	4 cut(s)	37, 598, 637, 661
Lsp1109I	GCAGC	4 cut(s)	123, 263, 665, 668
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	3 cut(s)	42, 291, 753
MalI	GATC	4 cut(s)	39, 600, 639, 663
MboI	GATC	4 cut(s)	37, 598, 637, 661
MboII	GAAGA	4 cut(s)	22, 136, 206, 209
MfeI	CAATTG	2 cut(s)	246, 645
MflI	RGATCY	1 cut(s)	661
MluCI	AATT	6 cut(s)	178, 246, 334, 550, 645, 774
MmeI	TCCRAC	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	2 cut(s)	64, 596
MspI	CCGG	4 cut(s)	29, 161, 263, 440
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	2 cut(s)	246, 645
MwoI	GCNNNNNNNGC	3 cut(s)	25, 251, 650
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	37, 598, 637, 661
NlaIII	CATG	4 cut(s)	77, 408, 532, 739
NspV	TTCGAA	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	138, 253, 655, 658
Ppu21I	YACGTR	1 cut(s)	43
Psp1406I	AACGTT	2 cut(s)	291, 753
PspPI	GGNCC	2 cut(s)	17, 437
PstI	CTGCAG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	6 cut(s)	45, 68, 460, 588, 725, 749
RsaNI	GTAC	6 cut(s)	44, 67, 459, 587, 724, 748
RseI	CAYNNNNRTG	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	536
SatI	GCNGC	4 cut(s)	137, 252, 654, 657
Sau3AI	GATC	4 cut(s)	37, 598, 637, 661
Sau96I	GGNCC	2 cut(s)	17, 437
ScaI	AGTACT	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	454
Sse9I	AATT	6 cut(s)	178, 246, 334, 550, 645, 774
SsiI	CCGC	3 cut(s)	64, 139, 563
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	608, 682
TaiI	ACGT	3 cut(s)	45, 294, 756
TaqI	TCGA	3 cut(s)	429, 537, 696
TasI	AATT	6 cut(s)	178, 246, 334, 550, 645, 774
TatI	WGTACW	2 cut(s)	458, 586
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	2 cut(s)	502, 520
TseI	GCWGC	4 cut(s)	136, 251, 653, 656
TspDTI	ATGAA	3 cut(s)	294, 393, 545
TspRI	CASTG	2 cut(s)	502, 520
XapI	RAATTY	4 cut(s)	178, 334, 550, 774
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	788
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.