Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

32455785 .. 32457548

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1197600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTTAGAGCTCCTTGCTGTGCGAAGATGGGGTTGAAGAAAGGGATTTGGACTCCAGAAGAAGATCACATACTTGTCACTTACATTCAGCAGCATGGCCATGGAAACTGGAGAGCTCTCCCAAAACTAGCTGGTTTGTTAAGGTGTGGAAAAAGTTGTAGACTCAGATGGACAAACTACTTGAGGCCAGATATCAAAAGAGGAAATTTTAGCAAGGAAGAAGAAGACACCATCATCAACTTACATCAAATATTGGGGAATAGATGGTCACAAATCGCGGCGAGATTGCCTGGTCGCACAGACAATGAAATAAAAAATGTATGGCACACCCATTTGAAAAAAAAACTGAAATCGAACCACACCGAACCAGAGTCTAAGCCACATTTCTACTCTATCAAAATGGAGCAAGAGCTAGACCCCGTTGATAATTCTTCATGTTATGCAAAATCTGAGAGCTTGGATTGTGGGCCCGTTTCGCCGTCTCAATGTACTTCCAGTGGCACGTCATCTGTTACGACCGGCGACGACGACAACAACAACAACGATGCATGCATGAAATTTGATGATTACCAAACAAATTTACCGGTAGCGGATGATAGTTTTTGGTCGGAAGTCTTATCAGCCGGGAATTCTGATGAGATTGTGAATGAGTTTCAGGCATTTGGTGGTGATCCACGAGTGAATGTTGGACCTACTGATGGTGGTTTTAGTTTAGATATGTACAATGACAACAACATGGATTTTTGGTTTAATAATTTCCTGGGAGCTGGGGAAATTCCAGAATTGTTAGAATTTGATATGTCAATAAGGAAGGCTGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

275

Amino Acids

30.88

Weight (kDa)

5.29

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	7.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 119	3.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	278, 590
AclWI	GGATC	1 cut(s)	665
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	6 cut(s)	205, 557, 577, 628, 774, 791
AfaI	GTAC	2 cut(s)	490, 722
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	2 cut(s)	37, 337
AjiI	CACGTC	1 cut(s)	504
AjnI	CCWGG	2 cut(s)	289, 759
AluBI	AGCT	6 cut(s)	11, 116, 131, 412, 456, 767
AluI	AGCT	6 cut(s)	11, 116, 131, 412, 456, 767
Alw21I	GWGCWC	2 cut(s)	13, 118
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	665
AoxI	GGCC	3 cut(s)	97, 185, 467
ApaI	GGGCCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	6 cut(s)	205, 557, 577, 628, 774, 791
AsiGI	ACCGGT	1 cut(s)	583
AspS9I	GGNCC	3 cut(s)	467, 468, 689
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	3 cut(s)	13, 118, 471
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	5 cut(s)	22, 162, 239, 258, 692
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	291, 761
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	2 cut(s)	128, 413
BisI	GCNGC	2 cut(s)	92, 279
BlsI	GCNGC	2 cut(s)	93, 280
Bme1390I	CCNGG	3 cut(s)	291, 625, 761
Bme18I	GGWCC	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	467, 468, 689
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	3 cut(s)	291, 625, 761
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	2 cut(s)	39, 130
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	100, 760
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse118I	RCCGGY	2 cut(s)	518, 583
Bse1I	ACTGG	2 cut(s)	113, 495
BseBI	CCWGG	2 cut(s)	291, 761
BseDI	CCNNGG	2 cut(s)	100, 760
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMII	CTCAG	2 cut(s)	178, 441
BseNI	ACTGG	2 cut(s)	113, 495
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	99, 187, 469
BshTI	ACCGGT	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiSI	CCGG	3 cut(s)	519, 584, 624
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	486
BsmBI	CGTCTC	1 cut(s)	486
BsnI	GGCC	3 cut(s)	99, 187, 469
Bsp120I	GGGCCC	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	13, 118, 471
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	2 cut(s)	64, 670
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	2 cut(s)	278, 590
BspANI	GGCC	3 cut(s)	99, 187, 469
BspCNI	CTCAG	2 cut(s)	177, 442
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	518, 583
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	113, 495
BssAI	RCCGGY	2 cut(s)	518, 583
BssECI	CCNNGG	2 cut(s)	100, 760
BssMI	GATC	2 cut(s)	64, 670
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	291, 761
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	3 cut(s)	164, 375, 450
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	67, 673
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	2 cut(s)	64, 670
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	2 cut(s)	291, 761
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	3 cut(s)	289, 623, 759
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	99, 187, 469
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	550
Cfr10I	RCCGGY	2 cut(s)	518, 583
Cfr13I	GGNCC	3 cut(s)	467, 468, 689
Csp6I	GTAC	2 cut(s)	489, 721
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	6 cut(s)	95, 101, 435, 549, 553, 736
CviQI	GTAC	2 cut(s)	489, 721
DdeI	CTNAG	3 cut(s)	164, 375, 450
DpnI	GATC	2 cut(s)	66, 672
DpnII	GATC	2 cut(s)	64, 670
EaeI	YGGCCR	1 cut(s)	97
Ecl136II	GAGCTC	2 cut(s)	11, 116
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	3 cut(s)	13, 118, 471
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	689
Eco53kI	GAGCTC	2 cut(s)	11, 116
EcoICRI	GAGCTC	2 cut(s)	11, 116
EcoRI	GAATTC	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	289, 759
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	2 cut(s)	550, 554
EcoT38I	GRGCYC	3 cut(s)	13, 118, 471
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	486
FaeI	CATG	6 cut(s)	98, 104, 438, 552, 556, 739
FatI	CATG	6 cut(s)	94, 100, 434, 548, 552, 735
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	92, 279
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	3 cut(s)	13, 118, 471
Fsp4HI	GCNGC	2 cut(s)	92, 279
FspBI	CTAG	2 cut(s)	128, 413
GluI	GCNGC	2 cut(s)	92, 279
GsaI	CCCAGC	1 cut(s)	771
GsuI	CTGGAG	2 cut(s)	39, 130
HaeIII	GGCC	3 cut(s)	99, 187, 469
HapII	CCGG	3 cut(s)	519, 584, 624
Hin1II	CATG	6 cut(s)	98, 104, 438, 552, 556, 739
HinfI	GANTC	3 cut(s)	52, 162, 371
HpaII	CCGG	3 cut(s)	519, 584, 624
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	4 cut(s)	167, 451, 610, 634
Hpy188III	TCNNGA	2 cut(s)	56, 779
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	2 cut(s)	527, 530
HpyAV	CCTTC	1 cut(s)	805
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	443, 548, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	3 cut(s)	164, 375, 450
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	6 cut(s)	98, 104, 438, 552, 556, 739
Kzo9I	GATC	2 cut(s)	64, 670
LmnI	GCTCC	3 cut(s)	16, 403, 764
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	128, 413
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	3 cut(s)	76, 267, 511
MalI	GATC	2 cut(s)	66, 672
MboI	GATC	2 cut(s)	64, 670
MboII	GAAGA	8 cut(s)	37, 49, 71, 74, 230, 233, 236, 423
MhlI	GDGCHC	3 cut(s)	13, 118, 471
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	9 cut(s)	205, 427, 557, 577, 628, 754, 774, 782, 791
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	3 cut(s)	46, 156, 380
MmeI	TCCRAC	2 cut(s)	588, 667
MnlI	CCTC	2 cut(s)	177, 194
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	550, 554
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	140, 750
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	3 cut(s)	519, 584, 624
MspR9I	CCNGG	3 cut(s)	291, 625, 761
MvaI	CCWGG	2 cut(s)	291, 761
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	64, 670
NlaIII	CATG	6 cut(s)	98, 104, 438, 552, 556, 739
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	76, 267
NsiI	ATGCAT	2 cut(s)	550, 554
NspI	RCATGY	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	552
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	93, 280
PleI	GAGTC	3 cut(s)	46, 156, 379
PpsI	GAGTC	3 cut(s)	46, 156, 379
Psp124BI	GAGCTC	2 cut(s)	13, 118
Psp6I	CCWGG	2 cut(s)	289, 759
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	2 cut(s)	289, 759
PspN4I	GGNNCC	1 cut(s)	469
PspOMI	GGGCCC	1 cut(s)	467
PspPI	GGNCC	3 cut(s)	467, 468, 689
RsaI	GTAC	2 cut(s)	490, 722
RsaNI	GTAC	2 cut(s)	489, 721
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	2 cut(s)	13, 118
SaqAI	TTAA	2 cut(s)	140, 750
SatI	GCNGC	2 cut(s)	92, 279
Sau3AI	GATC	2 cut(s)	64, 670
Sau96I	GGNCC	3 cut(s)	467, 468, 689
SchI	GAGTC	3 cut(s)	46, 156, 380
ScrFI	CCNGG	3 cut(s)	291, 625, 761
SduI	GDGCHC	3 cut(s)	13, 118, 471
SetI	ASST	9 cut(s)	13, 118, 133, 146, 414, 458, 506, 694, 769
SfaNI	GCATC	1 cut(s)	535
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	9 cut(s)	205, 427, 557, 577, 628, 754, 774, 782, 791
SsiI	CCGC	2 cut(s)	278, 590
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	2 cut(s)	128, 413
SstI	GAGCTC	2 cut(s)	13, 118
StyD4I	CCNGG	3 cut(s)	289, 623, 759
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	353
TasI	AATT	9 cut(s)	205, 427, 557, 577, 628, 754, 774, 782, 791
TatI	WGTACW	2 cut(s)	488, 720
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	140, 750
Tru9I	TTAA	2 cut(s)	140, 750
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	76, 267
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	76, 267
TspDTI	ATGAA	3 cut(s)	321, 423, 569
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	6 cut(s)	205, 557, 577, 628, 774, 791
XceI	RCATGY	1 cut(s)	552
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	128, 413
Zsp2I	ATGCAT	2 cut(s)	550, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.