Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

20202688 .. 20204462

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G223900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTGAGAGCTCCTTGCTGTGAGAAGATGGGGTTGAAGAAAGGGCCTTGGACCCCTGAAGAAGATCACGTACTTGTCACTTACATTCAACAGTATGGCCATGGCAACTGGCGAGCTCTGCCAAAACTAGCTGGTTTGTTGAGGTGTGGAAAGAGTTGTAGACTCAGATGGACAAACTACTTGAGGCCAGATATCAAAAGAGGAAATTTCAGCAGGGAAGAAGAAGACGCAATCATCAACTTACATGAAATGCTAGGAAATAGATGGTCAGCAATTGCAGCGAGATTGCCGGGTCGTACAGACAATGAAATTAAAAACGTTTGGCACACCCACTTAAAAAAGAGGCTCAAACAAAACCAAACCACCACCTCAGAAACCAGAGCGCACTTTTTCTCCACAAAAACAGAGCAAGAGCCGGAGCCCAGTGAAAAATCTGAGAGCTTGGATTGTGGGCCGGCATCTCCTCCTCAATGCACCTCAAGTGACACGTCATCAGCCACCACAAGCGACAACAACAGCAACAGCAGCAACAACGACAAGACATGCATGGAGTTTGATGGGTACGCAGCAAACTTACCAGAGGCTGATGAGAGCTTCTGGTCGGAGGTATTGTCGGCTGAGAATTCTGATCAGATGGTGGACCAGTTTCAGGCCATTGGTGGTGTCCCAAGAGTTGGTGTGGGCCCTGCTGATGATGGGTTTTGCCTAGATATGTATGACAATAACAGCATGGATTTTTGGCTCAATATTTTCCCAGGAGCGGATGAAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

259

Amino Acids

28.95

Weight (kDa)

5.05

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccBSI	CCGCTC	1 cut(s)	761
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	761
AclI	AACGTT	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	205, 622, 768
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	72, 298, 563
AfiI	CCNNNNNNNGG	3 cut(s)	649, 674, 760
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	37, 89
AjiI	CACGTC	1 cut(s)	489
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	5 cut(s)	11, 116, 131, 441, 594
AluI	AGCT	5 cut(s)	11, 116, 131, 441, 594
Alw21I	GWGCWC	2 cut(s)	13, 118
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	6 cut(s)	44, 97, 185, 452, 651, 682
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	3 cut(s)	278, 525, 566
ApoI	RAATTY	3 cut(s)	205, 622, 768
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	6 cut(s)	44, 51, 452, 640, 682, 683
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	51, 640
BaeGI	GKGCMC	1 cut(s)	686
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	4 cut(s)	13, 118, 423, 686
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvI	GCAGC	3 cut(s)	290, 537, 578
BccI	CCATC	6 cut(s)	22, 162, 258, 551, 628, 689
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	3 cut(s)	128, 254, 707
BisI	GCNGC	3 cut(s)	279, 526, 567
BlsI	GCNGC	3 cut(s)	280, 527, 568
Bme1390I	CCNGG	2 cut(s)	291, 756
Bme18I	GGWCC	2 cut(s)	51, 640
BmgBI	CACGTC	1 cut(s)	489
BmgT120I	GGNCC	6 cut(s)	44, 51, 452, 640, 682, 683
BmiI	GGNNCC	3 cut(s)	53, 420, 684
BmrFI	CCNGG	2 cut(s)	291, 756
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	202, 463
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	70
BsaJI	CCNNGG	3 cut(s)	47, 100, 754
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 596, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	649, 674, 760
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	3 cut(s)	113, 423, 643
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	47, 100, 754
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	3 cut(s)	649, 674, 760
BseMII	CTCAG	4 cut(s)	178, 384, 426, 609
BseNI	ACTGG	3 cut(s)	113, 423, 643
BseRI	GAGGAG	2 cut(s)	453, 456
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	3 cut(s)	290, 537, 578
BshFI	GGCC	6 cut(s)	46, 99, 187, 454, 653, 684
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiSI	CCGG	3 cut(s)	290, 416, 455
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	3 cut(s)	649, 674, 760
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	6 cut(s)	46, 99, 187, 454, 653, 684
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	4 cut(s)	13, 118, 423, 686
Bsp143I	GATC	2 cut(s)	64, 628
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	6 cut(s)	46, 99, 187, 454, 653, 684
BspCNI	CTCAG	4 cut(s)	177, 383, 427, 610
BspLI	GGNNCC	3 cut(s)	53, 420, 684
BsrBI	CCGCTC	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	113, 423, 643
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	47, 100, 754
BssMI	GATC	2 cut(s)	64, 628
BssT1I	CCWWGG	2 cut(s)	47, 100
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	114, 456
BstDEI	CTNAG	4 cut(s)	164, 370, 435, 618
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	769
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	67, 631
BstMBI	GATC	2 cut(s)	64, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 278, 525
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	289, 754
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	3 cut(s)	290, 537, 578
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	6 cut(s)	46, 99, 187, 454, 653, 684
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	769
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	114, 456
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	6 cut(s)	44, 51, 452, 640, 682, 683
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	71, 297, 562
CviAII	CATG	5 cut(s)	101, 245, 543, 547, 730
CviQI	GTAC	3 cut(s)	71, 297, 562
DdeI	CTNAG	4 cut(s)	164, 370, 435, 618
DpnI	GATC	2 cut(s)	66, 630
DpnII	GATC	2 cut(s)	64, 628
EaeI	YGGCCR	1 cut(s)	97
Ecl136II	GAGCTC	2 cut(s)	11, 116
Eco130I	CCWWGG	2 cut(s)	47, 100
Eco24I	GRGCYC	4 cut(s)	13, 118, 423, 686
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	51, 640
Eco53kI	GAGCTC	2 cut(s)	11, 116
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	2 cut(s)	11, 116
EcoO109I	RGGNCCY	2 cut(s)	44, 683
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 100
EcoT22I	ATGCAT	1 cut(s)	548
EcoT38I	GRGCYC	4 cut(s)	13, 118, 423, 686
ErhI	CCWWGG	2 cut(s)	47, 100
FaeI	CATG	5 cut(s)	104, 248, 546, 550, 733
FaiI	YATR	9 cut(s)	96, 102, 246, 544, 548, 713, 717, 731, 775
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	5 cut(s)	100, 244, 542, 546, 729
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	279, 526, 567
FriOI	GRGCYC	4 cut(s)	13, 118, 423, 686
Fsp4HI	GCNGC	3 cut(s)	279, 526, 567
FspBI	CTAG	3 cut(s)	128, 254, 707
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	279, 526, 567
HaeIII	GGCC	6 cut(s)	46, 99, 187, 454, 653, 684
HapII	CCGG	3 cut(s)	290, 416, 455
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	104, 248, 546, 550, 733
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	3 cut(s)	290, 416, 455
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	161, 640
Hpy188I	TCNGA	6 cut(s)	167, 373, 436, 604, 628, 633
Hpy8I	GTNNAC	2 cut(s)	161, 640
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	3 cut(s)	69, 318, 488
HpyCH4V	TGCA	3 cut(s)	278, 474, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 278, 525
HpyF3I	CTNAG	4 cut(s)	164, 370, 435, 618
HpySE526I	ACGT	3 cut(s)	69, 318, 488
Hsp92II	CATG	5 cut(s)	104, 248, 546, 550, 733
HspAI	GCGC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	64, 628
LmnI	GCTCC	3 cut(s)	16, 418, 758
Lsp1109I	GCAGC	3 cut(s)	290, 537, 578
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	3 cut(s)	128, 254, 707
MaeII	ACGT	3 cut(s)	69, 318, 488
MaeIII	GTNAC	2 cut(s)	76, 482
MalI	GATC	2 cut(s)	66, 630
MbiI	CCGCTC	1 cut(s)	761
MboI	GATC	2 cut(s)	64, 628
MboII	GAAGA	7 cut(s)	37, 49, 71, 74, 230, 233, 236
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	4 cut(s)	13, 118, 423, 686
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	5 cut(s)	205, 273, 309, 622, 768
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	582
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	548
MroNI	GCCGGC	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	312, 335
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	3 cut(s)	290, 416, 455
MspR9I	CCNGG	2 cut(s)	291, 756
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	3 cut(s)	118, 278, 525
NaeI	GCCGGC	1 cut(s)	456
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	64, 628
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	5 cut(s)	104, 248, 546, 550, 733
NlaIV	GGNNCC	3 cut(s)	53, 420, 684
NmuCI	GTSAC	2 cut(s)	76, 482
NsiI	ATGCAT	1 cut(s)	548
NspI	RCATGY	1 cut(s)	546
PdiI	GCCGGC	1 cut(s)	456
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	3 cut(s)	280, 527, 568
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Ppu21I	YACGTR	1 cut(s)	70
Psp124BI	GAGCTC	2 cut(s)	13, 118
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	53, 420, 684
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	6 cut(s)	44, 51, 452, 640, 682, 683
PstNI	CAGNNNCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	72, 298, 563
RsaNI	GTAC	3 cut(s)	71, 297, 562
SacI	GAGCTC	2 cut(s)	13, 118
SaqAI	TTAA	2 cut(s)	312, 335
SatI	GCNGC	3 cut(s)	279, 526, 567
Sau3AI	GATC	2 cut(s)	64, 628
Sau96I	GGNCC	6 cut(s)	44, 51, 452, 640, 682, 683
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	291, 756
SduI	GDGCHC	4 cut(s)	13, 118, 423, 686
SfaNI	GCATC	1 cut(s)	467
SinI	GGWCC	2 cut(s)	51, 640
SmlI	CTYRAG	2 cut(s)	181, 478
SmoI	CTYRAG	2 cut(s)	181, 478
Sse9I	AATT	5 cut(s)	205, 273, 309, 622, 768
SsiI	CCGC	1 cut(s)	761
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	128, 254, 707
SstI	GAGCTC	2 cut(s)	13, 118
StyD4I	CCNGG	2 cut(s)	289, 754
StyI	CCWWGG	2 cut(s)	47, 100
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	3 cut(s)	72, 321, 491
TasI	AATT	5 cut(s)	205, 273, 309, 622, 768
Tru1I	TTAA	2 cut(s)	312, 335
Tru9I	TTAA	2 cut(s)	312, 335
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	76, 482
TseI	GCWGC	3 cut(s)	278, 525, 566
Tsp45I	GTSAC	2 cut(s)	76, 482
TspDTI	ATGAA	2 cut(s)	261, 321
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	51, 640
XapI	RAATTY	3 cut(s)	205, 622, 768
XceI	RCATGY	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	128, 254, 707
Zsp2I	ATGCAT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.