Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Reverse (-)

51428964 .. 51431072

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAGCGGGTCGGGTCCTCCTTTAGGATTCAGCTAATGCCCTACTTTAAATTTGGACTGTTCGTTTCGTACGGCACTTTCAACTTTGGGGACGTCACACGGCTCGCCATATCTATATATATTCCCCTCCCGACTCTCATTTCCCTTAGCTTGCTTCCTTCCTTCTACTTTCCTCAGTGTCCTCAGCGAAACTCAAAGAACATTTTACAACCCTCGAGAATGGTGAGAGCTCCGTGCTGCGAGAAGATGGGGTTGAAGAAAGGGCCATGGACGCCGGAGGAGGATCACGTACTCGTCTCTTACATTCAGCAGTACGGCCATGGAAACTGGAGGGCGCTTCCCAAACTGGCAGGGTTGTTGAGGTGTGGGAAGAGTTGCAGGCTGCGGTGGACGAACTACCTGAGGCCGGATATCAAGAGAGGGAATTTTAGCAGGGAGGAAGAGGAGGCCATCATCAACTTGCATCAAATGTTGGGGAATAGATGGTCAGCAATTGCAGCAAGATTGCCTGGTCGCACAGACAATGAAATAAAAAACGTTTGGCACACCCACTTGAAAAAGAAGCTCAGCATCAAGCAGAATTCTACCACACCAGAAGCACAAGGTCAGGAATCCGAACCCGAACCCAAACCTGAAAATACTTCATGTTATGCAAAATCCGAAAGCTTCGAGTATGGGCCGGTTTCGCCACCTCAATGTACTACTTCGAGTGCTGATGACAGCTCCTCATTCACCACCAGTGAGAACAATAACTGTAGTGCTAATATGGGCATGAAAGTCGACTACGAAATGAATTTACCCCAAGCGGACGAGAGCTTTTGGTCAGAAATCTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

279

Amino Acids

31.81

Weight (kDa)

8.94

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	87 - 134	6.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	90 - 149	1.8e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	140 - 185	5.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	143 - 190	8.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	3 cut(s)	7, 385, 806
AclI	AACGTT	1 cut(s)	537
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	4 cut(s)	50, 424, 580, 793
AcyI	GRCGYC	2 cut(s)	93, 272
AfaI	GTAC	4 cut(s)	71, 291, 314, 700
AfiI	CCNNNNNNNGG	2 cut(s)	24, 406
AgsI	TTSAA	3 cut(s)	82, 256, 556
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	7 cut(s)	34, 150, 230, 565, 666, 723, 816
AluI	AGCT	7 cut(s)	34, 150, 230, 565, 666, 723, 816
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	5 cut(s)	263, 316, 404, 447, 677
ApeKI	GCWGC	3 cut(s)	237, 382, 497
ApoI	RAATTY	4 cut(s)	50, 424, 580, 793
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	15, 263, 677
AsuHPI	GGTGA	2 cut(s)	235, 724
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	15
AxyI	CCTNAGG	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	224, 369, 509
BccI	CCATC	3 cut(s)	241, 458, 477
BceAI	ACGGC	3 cut(s)	88, 116, 331
BcgI	CGANNNNNNTGC	2 cut(s)	760, 794
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	754
BfoI	RGCGCY	1 cut(s)	338
BisI	GCNGC	3 cut(s)	238, 383, 498
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	3 cut(s)	239, 384, 499
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	3 cut(s)	15, 263, 677
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	472, 579
BpmI	CTGGAG	1 cut(s)	349
Bpu10I	CCTNAGC	2 cut(s)	146, 183
Bpu1102I	GCTNAGC	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	289
BsaHI	GRCGYC	2 cut(s)	93, 272
BsaJI	CCNNGG	2 cut(s)	266, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 406
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	3 cut(s)	332, 351, 738
Bse21I	CCTNAGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	266, 319
BseLI	CCNNNNNNNGG	2 cut(s)	24, 406
BseMII	CTCAG	4 cut(s)	188, 197, 392, 580
BseNI	ACTGG	3 cut(s)	332, 351, 738
BseRI	GAGGAG	3 cut(s)	293, 458, 715
BseXI	GCAGC	3 cut(s)	224, 369, 509
BshFI	GGCC	5 cut(s)	265, 318, 406, 449, 679
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	3 cut(s)	275, 407, 680
BsiWI	CGTACG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	24, 406
BsmAI	GTCTC	1 cut(s)	301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	5 cut(s)	265, 318, 406, 449, 679
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	566
Bsp19I	CCATGG	2 cut(s)	266, 319
BspACI	CCGC	3 cut(s)	7, 385, 806
BspANI	GGCC	5 cut(s)	265, 318, 406, 449, 679
BspCNI	CTCAG	4 cut(s)	187, 196, 393, 579
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	679
BsrI	ACTGG	3 cut(s)	332, 351, 738
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	2 cut(s)	266, 319
BssMI	GATC	1 cut(s)	283
BssNI	GRCGYC	2 cut(s)	93, 272
BssT1I	CCWWGG	2 cut(s)	266, 319
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	60, 755
Bst6I	CTCTTC	2 cut(s)	365, 435
BstACI	GRCGYC	2 cut(s)	93, 272
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	3 cut(s)	105, 152, 380
BstDEI	CTNAG	5 cut(s)	146, 174, 183, 401, 566
BstDSI	CCRYGG	2 cut(s)	266, 319
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 497, 685
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	754
BstV1I	GCAGC	3 cut(s)	224, 369, 509
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	265, 318, 406, 449, 679
BtgI	CCRYGG	2 cut(s)	266, 319
BtsIMutI	CAGTG	2 cut(s)	182, 745
Cac8I	GCNNGC	3 cut(s)	105, 152, 380
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	3 cut(s)	15, 263, 677
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	70, 290, 313, 699
CviAII	CATG	4 cut(s)	267, 320, 645, 772
CviQI	GTAC	4 cut(s)	70, 290, 313, 699
DdeI	CTNAG	5 cut(s)	146, 174, 183, 401, 566
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DraI	TTTAAA	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	365, 435
EarI	CTCTTC	2 cut(s)	365, 435
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	266, 319
Eco24I	GRGCYC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	230
Eco81I	CCTNAGG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	266, 319
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	266, 319
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	270, 323, 648, 775
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	4 cut(s)	266, 319, 644, 771
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	238, 383, 498
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	238, 383, 498
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	3 cut(s)	238, 383, 498
GsuI	CTGGAG	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	5 cut(s)	265, 318, 406, 449, 679
HapII	CCGG	3 cut(s)	275, 407, 680
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	337
Hin1I	GRCGYC	2 cut(s)	93, 272
Hin1II	CATG	4 cut(s)	270, 323, 648, 775
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	3 cut(s)	28, 133, 611
HpaII	CCGG	3 cut(s)	275, 407, 680
HphI	GGTGA	2 cut(s)	235, 724
Hpy166II	GTNNAC	2 cut(s)	390, 781
Hpy188I	TCNGA	3 cut(s)	616, 661, 826
Hpy188III	TCNNGA	4 cut(s)	130, 216, 415, 608
Hpy8I	GTNNAC	2 cut(s)	390, 781
HpyAV	CCTTC	2 cut(s)	168, 172
HpyCH4III	ACNGT	2 cut(s)	60, 755
HpyCH4IV	ACGT	3 cut(s)	93, 288, 537
HpyCH4V	TGCA	4 cut(s)	378, 463, 497, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 497, 685
HpyF3I	CTNAG	5 cut(s)	146, 174, 183, 401, 566
HpySE526I	ACGT	3 cut(s)	93, 288, 537
Hsp92I	GRCGYC	2 cut(s)	93, 272
Hsp92II	CATG	4 cut(s)	270, 323, 648, 775
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	235, 728
Lsp1109I	GCAGC	3 cut(s)	224, 369, 509
LweI	GCATC	2 cut(s)	472, 579
MaeII	ACGT	3 cut(s)	93, 288, 537
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	256, 268, 382, 452
MfeI	CAATTG	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	5 cut(s)	50, 424, 492, 580, 793
MlyI	GAGTC	1 cut(s)	127
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	694
MspI	CCGG	3 cut(s)	275, 407, 680
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	3 cut(s)	271, 497, 685
NcoI	CCATGG	2 cut(s)	266, 319
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	270, 323, 648, 775
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	28, 611
Pfl23II	CGTACG	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	239, 384, 499
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	232
Psp1406I	AACGTT	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	3 cut(s)	15, 263, 677
PspPPI	RGGWCCY	1 cut(s)	15
RsaI	GTAC	4 cut(s)	71, 291, 314, 700
RsaNI	GTAC	4 cut(s)	70, 290, 313, 699
RseI	CAYNNNNRTG	1 cut(s)	694
SacI	GAGCTC	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	779
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	3 cut(s)	238, 383, 498
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	3 cut(s)	15, 263, 677
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	472, 579
SfcI	CTRYAG	1 cut(s)	754
Sfr274I	CTCGAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	5 cut(s)	50, 424, 492, 580, 793
SsiI	CCGC	3 cut(s)	7, 385, 806
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	266, 319
TaaI	ACNGT	2 cut(s)	60, 755
TaiI	ACGT	3 cut(s)	96, 291, 540
TaqI	TCGA	4 cut(s)	215, 669, 707, 780
TasI	AATT	5 cut(s)	50, 424, 492, 580, 793
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	2 cut(s)	28, 611
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	182, 745
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	237, 382, 497
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	5 cut(s)	17, 540, 633, 788, 806
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	182, 745
VpaK11BI	GGWCC	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	4 cut(s)	50, 424, 580, 793
XhoI	CTCGAG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	780
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.