Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

3233852 .. 3235936

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTGAGAGCTCCTTGCTGTGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTACTGAAGAAGACCAGATTCTCATCTCCTACATCCAAACTTACGGTCATGGAAATTGGCGAGCTCTGCCTAAGCATGCTGGCTTGTTGAGATGTGGGAAGAGCTGCAGGCTCCGGTGGATAAACTATCTGAGGCCGGATATCAAGAGAGGAAATTTCAGTAGAGAAGAAGAAGATGCCATCATCAATTTGCATGAAATGCTTGGTAACAGATGGTCAGCAATCGCAGCAAGATTACCAGGAAGAACTGATAATGAAATAAAAAATGTATGGCATACCCACTTGAAGAAGAGACTAATTAAACGAGACAACACCACATCACCAACATGTAGCACTTCCAATCTCACAGGCCAATATGCAGAGCCTGAATGTGTGAATTTTGAGAGTACAACAAGTCATGCGTCAATGTCACCACAACCAAGTTCTAGTGAAGATGTTTCATCAGTCACTGAAGCCTCAGCCGCAACCGGTCAGAACATGATAAAAGATGAAAAGATTGAGTTGGATGCAACCTTCTCCGATTTCGATGACAGTTTCTGGTCAGAGGCACTTTCAGCTGACAATTCCGGCGACATCCCATTAGAGTTTTTGGAGGGCACAAATGATCAAGCACAACCTGAACTTCCATTCCCATCGAACATTGGTGATGGCATGGAGTTTTGGTACGACCTTTTCATCAAAGCTGGCCATGGGGGCACACCAGAACTACCAGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

257

Amino Acids

28.72

Weight (kDa)

5.06

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.5e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.2e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	8.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	2 cut(s)	205, 427
AcuI	CTGAAG	2 cut(s)	78, 522
AfaI	GTAC	2 cut(s)	439, 716
AflIII	ACRYGT	1 cut(s)	377
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	37, 337
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	5 cut(s)	11, 116, 156, 608, 734
AluI	AGCT	5 cut(s)	11, 116, 156, 608, 734
Alw21I	GWGCWC	2 cut(s)	13, 118
Alw26I	GTCTC	2 cut(s)	337, 351
AlwNI	CAGNNNCTG	3 cut(s)	416, 500, 588
AoxI	GGCC	4 cut(s)	44, 185, 400, 736
ApeKI	GCWGC	2 cut(s)	156, 278
ApoI	RAATTY	2 cut(s)	205, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AsiGI	ACCGGT	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	16, 363, 453, 707
BaeGI	GKGCMC	2 cut(s)	650, 749
BalI	TGGCCA	1 cut(s)	738
BanII	GRGCYC	2 cut(s)	13, 118
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	13, 118
BbvCI	CCTCAGC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	143, 290
BccI	CCATC	4 cut(s)	239, 258, 691, 692
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	337, 351
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	744
BisI	GCNGC	3 cut(s)	157, 279, 513
BlsI	GCNGC	3 cut(s)	158, 280, 514
Bme1390I	CCNGG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	217, 547
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	2 cut(s)	123, 508
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	47, 739
BsaWI	WCCGGW	2 cut(s)	165, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bse118I	RCCGGY	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	47, 739
BseGI	GGATG	3 cut(s)	84, 562, 624
BseJI	GATNNNNATC	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	173, 522
BseSI	GKGCMC	2 cut(s)	650, 749
BseXI	GCAGC	2 cut(s)	143, 290
BshFI	GGCC	4 cut(s)	46, 187, 402, 738
BshTI	ACCGGT	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	13, 118
BsiSI	CCGG	4 cut(s)	166, 188, 519, 618
BsmAI	GTCTC	2 cut(s)	337, 351
BsnI	GGCC	4 cut(s)	46, 187, 402, 738
Bsp1286I	GDGCHC	4 cut(s)	13, 118, 650, 749
Bsp143I	GATC	1 cut(s)	655
Bsp19I	CCATGG	2 cut(s)	47, 739
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	4 cut(s)	46, 187, 402, 738
BspCNI	CTCAG	2 cut(s)	174, 521
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	47, 739
BssMI	GATC	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	47, 739
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	98, 584
Bst6I	CTCTTC	2 cut(s)	146, 335
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstC8I	GCNNGC	5 cut(s)	114, 129, 133, 161, 736
BstDEI	CTNAG	3 cut(s)	123, 182, 508
BstDSI	CCRYGG	2 cut(s)	47, 739
BstF5I	GGATG	3 cut(s)	84, 562, 624
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	2 cut(s)	337, 351
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 250, 278, 512, 605, 744
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	131, 381
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	2 cut(s)	650, 749
BstV1I	GCAGC	2 cut(s)	143, 290
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	4 cut(s)	46, 187, 402, 738
BtgI	CCRYGG	2 cut(s)	47, 739
BtsCI	GGATG	3 cut(s)	84, 562, 624
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	5 cut(s)	114, 129, 133, 161, 736
CaiI	CAGNNNCTG	3 cut(s)	416, 500, 588
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	438, 715
CspAI	ACCGGT	1 cut(s)	518
CviAII	CATG	9 cut(s)	48, 101, 128, 245, 378, 449, 529, 703, 740
CviQI	GTAC	2 cut(s)	438, 715
DdeI	CTNAG	3 cut(s)	123, 182, 508
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	146, 335
EarI	CTCTTC	2 cut(s)	146, 335
Ecl136II	GAGCTC	2 cut(s)	11, 116
Eco130I	CCWWGG	2 cut(s)	47, 739
Eco24I	GRGCYC	2 cut(s)	13, 118
Eco32I	GATATC	1 cut(s)	193
Eco53kI	GAGCTC	2 cut(s)	11, 116
Eco57I	CTGAAG	2 cut(s)	78, 522
EcoICRI	GAGCTC	2 cut(s)	11, 116
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 739
EcoT38I	GRGCYC	2 cut(s)	13, 118
ErhI	CCWWGG	2 cut(s)	47, 739
FaeI	CATG	9 cut(s)	51, 104, 131, 248, 381, 452, 532, 706, 743
FatI	CATG	9 cut(s)	47, 100, 127, 244, 377, 448, 528, 702, 739
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	3 cut(s)	157, 279, 513
FokI	GGATG	3 cut(s)	71, 569, 611
FriOI	GRGCYC	2 cut(s)	13, 118
Fsp4HI	GCNGC	3 cut(s)	157, 279, 513
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	3 cut(s)	157, 279, 513
HaeIII	GGCC	4 cut(s)	46, 187, 402, 738
HapII	CCGG	4 cut(s)	166, 188, 519, 618
HgaI	GACGC	1 cut(s)	441
Hin1II	CATG	9 cut(s)	51, 104, 131, 248, 381, 452, 532, 706, 743
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	4 cut(s)	166, 188, 519, 618
HphI	GGTGA	4 cut(s)	16, 363, 453, 707
Hpy188I	TCNGA	4 cut(s)	183, 525, 571, 595
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	2 cut(s)	98, 584
HpyCH4V	TGCA	4 cut(s)	159, 244, 410, 560
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 250, 278, 512, 605, 744
HpyF3I	CTNAG	3 cut(s)	123, 182, 508
Hsp92II	CATG	9 cut(s)	51, 104, 131, 248, 381, 452, 532, 706, 743
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	1 cut(s)	655
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	16, 168
Lsp1109I	GCAGC	2 cut(s)	143, 290
LweI	GCATC	2 cut(s)	217, 547
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	257, 459, 496
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MhlI	GDGCHC	4 cut(s)	13, 118, 650, 749
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	6 cut(s)	106, 205, 238, 348, 427, 613
MluNI	TGGCCA	1 cut(s)	738
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	5 cut(s)	177, 194, 517, 589, 637
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	376
Msp20I	TGGCCA	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	4 cut(s)	166, 188, 519, 618
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	6 cut(s)	118, 250, 278, 512, 605, 744
NcoI	CCATGG	2 cut(s)	47, 739
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	9 cut(s)	51, 104, 131, 248, 381, 452, 532, 706, 743
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	2 cut(s)	459, 496
NspI	RCATGY	2 cut(s)	131, 381
PaeI	GCATGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	70
PinAI	ACCGGT	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	158, 280, 514
PscI	ACATGT	1 cut(s)	377
Psp124BI	GAGCTC	2 cut(s)	13, 118
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	3 cut(s)	416, 500, 588
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	439, 716
RsaNI	GTAC	2 cut(s)	438, 715
RseI	CAYNNNNRTG	1 cut(s)	376
SacI	GAGCTC	2 cut(s)	13, 118
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	157, 279, 513
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	4 cut(s)	13, 118, 650, 749
SetI	ASST	8 cut(s)	13, 118, 158, 566, 610, 670, 723, 736
SfaNI	GCATC	2 cut(s)	217, 547
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	376
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	6 cut(s)	106, 205, 238, 348, 427, 613
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	1 cut(s)	477
SstI	GAGCTC	2 cut(s)	13, 118
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	47, 739
TaaI	ACNGT	2 cut(s)	98, 584
TaqI	TCGA	2 cut(s)	576, 686
TasI	AATT	6 cut(s)	106, 205, 238, 348, 427, 613
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	459, 496
TseI	GCWGC	2 cut(s)	156, 278
Tsp45I	GTSAC	2 cut(s)	459, 496
TspDTI	ATGAA	5 cut(s)	261, 321, 480, 555, 715
TspRI	CASTG	1 cut(s)	505
XapI	RAATTY	2 cut(s)	205, 427
XceI	RCATGY	2 cut(s)	131, 381
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.