Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

646887 .. 647426

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGATAACATGCTTTGCAGGCGGAGCCGTACCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACAACAAGGGAGTTAGGTCCCCAACTGTAGAGCAGATTCAGAGGATCTGTTTCCAGCTGAAATGGTACGGAACGATCGAGAGCAAGAACGTCTATTATTGGTTCGTGAACCACAGGGCTCGGGAGAAACAACAGAAAAGGTTCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGTTTGTTGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCAGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATGATTGCTTTTAACGGGCAAATGGGGAACTATGGTGGTTATGGATCTATGAGCATGAGAAGAGTTTTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

179

Amino Acids

20.28

Weight (kDa)

9.69

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	6.2e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	3 cut(s)	194, 369, 469
AcuI	CTGAAG	2 cut(s)	361, 390
AfaI	GTAC	3 cut(s)	91, 209, 343
AgsI	TTSAA	1 cut(s)	497
AhlI	ACTAGT	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	136, 199, 410, 505
AluI	AGCT	4 cut(s)	136, 199, 410, 505
AlwI	GGATC	3 cut(s)	194, 369, 469
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	2 cut(s)	281, 519
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	2 cut(s)	108, 168
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	55, 94
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	4 cut(s)	6, 86, 161, 343
BmrFI	CCNGG	2 cut(s)	55, 94
BmsI	GCATC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 298
BseJI	GATNNNNATC	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	348, 515
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	262, 306
Bsp143I	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	349, 514
BspLI	GGNNCC	4 cut(s)	6, 86, 161, 343
BspPI	GGATC	3 cut(s)	194, 369, 469
BspT107I	GGYRCC	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	357, 501
BstF5I	GGATG	2 cut(s)	37, 298
BstKTI	GATC	7 cut(s)	115, 189, 219, 317, 364, 383, 464
BstMBI	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 84, 407
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 92
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	3 cut(s)	186, 380, 461
BstYI	RGATCY	3 cut(s)	186, 380, 461
Bsu36I	CCTNAGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	37, 298
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	90, 208, 342
CviAII	CATG	5 cut(s)	70, 299, 307, 472, 537
CviJI	RGCY	7 cut(s)	53, 87, 136, 199, 260, 410, 505
CviKI_1	RGCY	7 cut(s)	53, 87, 136, 199, 260, 410, 505
CviQI	GTAC	3 cut(s)	90, 208, 342
DdeI	CTNAG	2 cut(s)	357, 501
DpnI	GATC	7 cut(s)	114, 188, 218, 316, 363, 382, 463
DpnII	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	361, 390
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	5 cut(s)	73, 302, 310, 475, 540
FaiI	YATR	9 cut(s)	71, 300, 308, 369, 450, 459, 467, 473, 538
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	5 cut(s)	69, 298, 306, 471, 536
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 305
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	527
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	5 cut(s)	73, 302, 310, 475, 540
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	3 cut(s)	99, 250, 285
Hpy188I	TCNGA	4 cut(s)	117, 183, 292, 380
Hpy188III	TCNNGA	3 cut(s)	220, 247, 263
Hpy8I	GTNNAC	3 cut(s)	99, 250, 285
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	78, 310, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 84, 407
HpyF3I	CTNAG	2 cut(s)	357, 501
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	73, 302, 310, 475, 540
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
LmnI	GCTCC	2 cut(s)	84, 133
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	398
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	231
MalI	GATC	7 cut(s)	114, 188, 218, 316, 363, 382, 463
MboI	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
MboII	GAAGA	3 cut(s)	375, 396, 489
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	3 cut(s)	186, 380, 461
MhlI	GDGCHC	2 cut(s)	262, 306
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	6 cut(s)	22, 29, 137, 177, 352, 502
MroXI	GAANNNNTTC	2 cut(s)	281, 519
MseI	TTAA	2 cut(s)	372, 429
MspA1I	CMGCKG	3 cut(s)	199, 410, 505
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	55, 94
MunI	CAATTG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	79, 84, 407
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
NlaIII	CATG	5 cut(s)	73, 302, 310, 475, 540
NlaIV	GGNNCC	4 cut(s)	6, 86, 161, 343
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	2 cut(s)	281, 519
PfeI	GAWTC	2 cut(s)	123, 178
PkrI	GCNGC	1 cut(s)	52
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	4 cut(s)	6, 86, 161, 343
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PsuI	RGATCY	3 cut(s)	186, 380, 461
PvuI	CGATCG	1 cut(s)	219
PvuII	CAGCTG	3 cut(s)	199, 410, 505
RsaI	GTAC	3 cut(s)	91, 209, 343
RsaNI	GTAC	3 cut(s)	90, 208, 342
SaqAI	TTAA	2 cut(s)	372, 429
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	112, 186, 216, 314, 361, 380, 461
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	55, 94
SduI	GDGCHC	2 cut(s)	262, 306
SetI	ASST	9 cut(s)	98, 138, 161, 201, 234, 284, 358, 412, 507
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	2 cut(s)	53, 92
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	2 cut(s)	372, 429
Tru9I	TTAA	2 cut(s)	372, 429
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	2 cut(s)	281, 519
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.