Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004449

Physical Location & Seq

Genomic Coordinates Forward (+)

2785268 .. 2787702

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTGAGAGCTCCTTGCTGCGAGAAGATGGGATTGAAGAAAGGGCCATGGACGTCTGAAGAAGACCAAATTCTAGTTTCCTTCATCCAAAAATATGGTCATGGAAACTGGCGTGCCCTGCCAAAGCAAGCTGGCTTGTTGAGATGTGGGAAGAGCTGCAGACTCCGGTGGATAAACTATTTGAGACCCGATATCAAGAGAGGAAACTTCACAAGAGAAGAAGAGGAAGCTATCATTAAGTTGCATGAAATGCTGGGTAACAGGTGGTCAGCAATTGCAGCAAGATTACCAGGACGCACAGACAACGAGATAAAAAATGTATGGCACACCCATTTGAAGAAAAGACTCAAAGATAAGACTTCAACCTCATCACCAGCAAGCAGTACTTCCAATGTCACAAGCCAGTCTGCTGAGCCAGAAAATATGATTTCGCCACAACCATCTTCCAGTTCCAGTGATGTTTCCTCTGTCACAGAAGTCTCAGCTGCATTGACTGATGATAATCACCGGGACATGATAACCATGAAAGGCGAAAACATGGAGCTTTCGGAAACATTCCCCGAAATCGACGACAGTTTCTGGTCTGAGGCACTCTCAGCTGATAATTCCAGCATCCCATTGGAATTTCCAGAGGCCACAAATGATCAAGCACAACCCCAATTTCCAATCACTGAAAACGATTCAGGGGAGTTGGGTTTTACTTTTGGTCCAAACATGGATGATGGCATGGAGTTTTGGTACGACCTTTTCATTAAAGCTGGCCATGGGGACACACCGAAGTTACCAGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.66

Weight (kDa)

5.09

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31180
fragaria_vesca	FvH4_2g21500 FvH4_4g03610
malus_domestica	MD05G1197600.v1.1 MD10G1184100.v1.1 MD13G1213900.v1.1 MD16G1218000.v1.1
prunus_persica	Prupe.1G039200_v2.0.a1 Prupe.8G223900_v2.0.a1
pyrus_communis	pycom05g18450 pycom10g15950 pycom16g18240
rosa_chinensis	RchiOBHm_Chr4g0392981 RchiOBHm_Chr6g0288151
rosa_laevigata	RLG00000009777 RLG00000012434
rosa_multiflora	Rmu_sc0002207.1_g000004 Rmu_sc0008339.1_g000020
rosa_roxburghii	Rroxscaffold_5G00338090 Rroxscaffold_7G00180440
rosa_rugosa	Rorug04G0003200 Rorug06G0194600
rosa_samantha	Rh4AG045200 Rh4BG041100 Rh4CG048800 Rh4DG042800 Rh6AG304900 Rh6BG310900 Rh6DG304000
rosa_wichuraiana	Rw0G014460 Rw4G003550 Rw6G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	3 cut(s)	69, 623, 788
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	385, 740
AgsI	TTSAA	3 cut(s)	37, 337, 363
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	8 cut(s)	11, 131, 156, 230, 485, 544, 599, 758
AluI	AGCT	8 cut(s)	11, 131, 156, 230, 485, 544, 599, 758
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	178, 484
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	3 cut(s)	44, 633, 760
ApeKI	GCWGC	4 cut(s)	18, 156, 278, 485
ApoI	RAATTY	3 cut(s)	69, 623, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspS9I	GGNCC	2 cut(s)	44, 707
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	3 cut(s)	16, 363, 497
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	5, 143, 290, 472
BccI	CCATC	3 cut(s)	22, 448, 716
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	178, 484
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	4 cut(s)	19, 157, 279, 486
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	4 cut(s)	20, 158, 280, 487
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	291, 509
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	44, 707
BmrFI	CCNGG	2 cut(s)	291, 509
BmsI	GCATC	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	47, 763
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bse1I	ACTGG	4 cut(s)	113, 403, 447, 453
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	47, 763
BseGI	GGATG	3 cut(s)	84, 612, 724
BseJI	GATNNNNATC	1 cut(s)	501
BseMII	CTCAG	4 cut(s)	402, 495, 576, 609
BseNI	ACTGG	4 cut(s)	113, 403, 447, 453
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	5, 143, 290, 472
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	3 cut(s)	46, 635, 762
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	166, 508
BslFI	GGGAC	2 cut(s)	524, 782
BsmAI	GTCTC	2 cut(s)	178, 484
BsmFI	GGGAC	2 cut(s)	524, 782
BsnI	GGCC	3 cut(s)	46, 635, 762
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	13, 118
Bsp143I	GATC	1 cut(s)	643
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	2 cut(s)	47, 763
BspANI	GGCC	3 cut(s)	46, 635, 762
BspCNI	CTCAG	4 cut(s)	403, 494, 577, 608
BspMAI	CTGCAG	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	113, 403, 447, 453
BssECI	CCNNGG	2 cut(s)	47, 763
BssMI	GATC	1 cut(s)	643
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	47, 763
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstC8I	GCNNGC	5 cut(s)	114, 129, 133, 379, 760
BstDEI	CTNAG	4 cut(s)	411, 481, 585, 595
BstDSI	CCRYGG	2 cut(s)	47, 763
BstF5I	GGATG	3 cut(s)	84, 612, 724
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	2 cut(s)	178, 484
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 250, 278, 596
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	289, 507
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	5, 143, 290, 472
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	46, 635, 762
BtgI	CCRYGG	2 cut(s)	47, 763
BtsCI	GGATG	3 cut(s)	84, 612, 724
BtsIMutI	CAGTG	2 cut(s)	460, 669
Cac8I	GCNNGC	5 cut(s)	114, 129, 133, 379, 760
CaiI	CAGNNNCTG	1 cut(s)	579
Cfr13I	GGNCC	2 cut(s)	44, 707
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	384, 739
CviAII	CATG	9 cut(s)	48, 101, 245, 514, 523, 538, 715, 727, 764
CviQI	GTAC	2 cut(s)	384, 739
DdeI	CTNAG	4 cut(s)	411, 481, 585, 595
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 763
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 763
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 763
FaeI	CATG	9 cut(s)	51, 104, 248, 517, 526, 541, 718, 730, 767
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	2 cut(s)	524, 782
FatI	CATG	9 cut(s)	47, 100, 244, 513, 522, 537, 714, 726, 763
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	19, 157, 279, 486
FokI	GGATG	3 cut(s)	71, 599, 731
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	19, 157, 279, 486
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	4 cut(s)	19, 157, 279, 486
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	46, 635, 762
HapII	CCGG	2 cut(s)	166, 508
HgaI	GACGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	9 cut(s)	51, 104, 248, 517, 526, 541, 718, 730, 767
HinfI	GANTC	3 cut(s)	162, 345, 680
HpaII	CCGG	2 cut(s)	166, 508
HphI	GGTGA	3 cut(s)	16, 363, 497
Hpy188I	TCNGA	3 cut(s)	58, 550, 586
Hpy188III	TCNNGA	2 cut(s)	196, 629
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	159, 244, 278, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 250, 278, 596
HpyF3I	CTNAG	4 cut(s)	411, 481, 585, 595
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	9 cut(s)	51, 104, 248, 517, 526, 541, 718, 730, 767
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	643
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	16, 541
Lsp1109I	GCAGC	4 cut(s)	5, 143, 290, 472
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	4 cut(s)	257, 394, 469, 780
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	9 cut(s)	37, 49, 71, 74, 163, 230, 233, 349, 435
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	13, 118
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	6 cut(s)	69, 273, 604, 623, 659, 788
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	2 cut(s)	156, 339
MnlI	CCTC	6 cut(s)	194, 217, 376, 475, 580, 625
Mox20I	TGGCCA	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	2 cut(s)	237, 753
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	2 cut(s)	485, 599
MspI	CCGG	2 cut(s)	166, 508
MspR9I	CCNGG	2 cut(s)	291, 509
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	118, 250, 278, 596
NciI	CCSGG	1 cut(s)	509
NcoI	CCATGG	2 cut(s)	47, 763
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	9 cut(s)	51, 104, 248, 517, 526, 541, 718, 730, 767
NmuCI	GTSAC	2 cut(s)	394, 469
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	4 cut(s)	20, 158, 280, 487
PleI	GAGTC	2 cut(s)	156, 339
PpsI	GAGTC	2 cut(s)	156, 339
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	44, 707
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	579
PvuII	CAGCTG	2 cut(s)	485, 599
RsaI	GTAC	2 cut(s)	385, 740
RsaNI	GTAC	2 cut(s)	384, 739
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	237, 753
SatI	GCNGC	4 cut(s)	19, 157, 279, 486
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	2 cut(s)	44, 707
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	2 cut(s)	156, 339
ScrFI	CCNGG	2 cut(s)	291, 509
SduI	GDGCHC	2 cut(s)	13, 118
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	707
Sse9I	AATT	6 cut(s)	69, 273, 604, 623, 659, 788
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	289, 507
StyI	CCWWGG	2 cut(s)	47, 763
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	567
TasI	AATT	6 cut(s)	69, 273, 604, 623, 659, 788
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	2 cut(s)	237, 753
Tru9I	TTAA	2 cut(s)	237, 753
TscAI	CASTG	2 cut(s)	460, 676
TseFI	GTSAC	2 cut(s)	394, 469
TseI	GCWGC	4 cut(s)	18, 156, 278, 485
Tsp45I	GTSAC	2 cut(s)	394, 469
TspDTI	ATGAA	4 cut(s)	73, 261, 539, 739
TspRI	CASTG	2 cut(s)	460, 676
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	3 cut(s)	69, 623, 788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.