Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

14300672 .. 14302496

Gene Structure 1825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGACAGCATCAGCTCTCTCATCACTCTCTTCACTCTCACTCCACACCCGAACCTCTTCTCTCATCTCCTCTTCCTCCACAAAATCCATCGTCTCTTTCTCCTCCTTCCTCAACCGCCGCTTCTCATCTCTCACTCTCGTCAAAGCCTCATCGACCGATACCGAAACCATCTTCTTCGAAGACGAAACACCAGAAATAACCGCAAATGTCGTCTTCGACCCACCAATTGCTCCCGAAGGATTCGTCTCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGAGGAAGAGATCGCTACCGCTTTTGAAGAGCTCTATGGACCTGCGTATAGTGGTGAGAGTATGCTTGGGAAAGATATTTATGTGATGGACTCAAAGCATAAGAAGAGTTCAGGTATTGGTGGGAAGCCAAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAAGTTTAGAGCTATCGTTGTTGTTGGTGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCTATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTATTCTACTTTCCCTCACAGATCAGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGCTTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTTAGGATTGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAACAATGCTCTCAACAATGCGAGAGCCACTCTTGCAGCAGTACAACAGATGAGACAGTTCCGCGATGTTGCACAAGAGCGTGGAATCCCCATGGAAGAACTCTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

303

Amino Acids

32.64

Weight (kDa)

8.99

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	147 - 211	2.1e-23	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	224 - 294	4.5e-26	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	334, 712
AccB7I	CCANNNNNTGG	1 cut(s)	719
AccBSI	CCGCTC	1 cut(s)	740
AccII	CGCG	1 cut(s)	864
AciI	CCGC	6 cut(s)	118, 121, 204, 303, 740, 862
AfaI	GTAC	2 cut(s)	718, 843
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	311, 443, 502, 626
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	4 cut(s)	17, 316, 512, 793
AluI	AGCT	4 cut(s)	17, 316, 512, 793
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	4 cut(s)	100, 253, 275, 847
AlwNI	CAGNNNCTG	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	581, 683, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	5 cut(s)	350, 539, 683, 702, 703
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	323
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	2 cut(s)	189, 208
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	568, 695, 848
BccI	CCATC	5 cut(s)	98, 179, 364, 428, 754
BciT130I	CCWGG	1 cut(s)	714
BcoDI	GTCTC	4 cut(s)	100, 253, 275, 847
BfaI	CTAG	2 cut(s)	609, 755
BfuAI	ACCTGC	2 cut(s)	334, 712
BisI	GCNGC	4 cut(s)	121, 582, 684, 837
BlsI	GCNGC	4 cut(s)	122, 583, 685, 838
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	3 cut(s)	20, 595, 684
BpiI	GAAGAC	2 cut(s)	189, 208
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	687, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 726, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	724
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	687, 891
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	4 cut(s)	61, 94, 243, 750
BseXI	GCAGC	3 cut(s)	568, 695, 848
Bsh1236I	CGCG	1 cut(s)	864
Bsh1285I	CGRYCG	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	4 cut(s)	100, 253, 275, 847
BsmBI	CGTCTC	2 cut(s)	100, 253
BsmI	GAATGC	1 cut(s)	781
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	294, 662
Bsp19I	CCATGG	1 cut(s)	891
BspACI	CCGC	6 cut(s)	118, 121, 204, 303, 740, 862
BspFNI	CGCG	1 cut(s)	864
BspMI	ACCTGC	2 cut(s)	334, 712
BspQI	GCTCTTC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	740
BsrI	ACTGG	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	687, 891
BssMI	GATC	2 cut(s)	294, 662
BssT1I	CCWWGG	2 cut(s)	687, 891
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	858
Bst6I	CTCTTC	7 cut(s)	37, 64, 79, 285, 306, 383, 438
BstBI	TTCGAA	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	474, 561, 639, 698
BstDSI	CCRYGG	1 cut(s)	891
BstFNI	CGCG	1 cut(s)	864
BstKTI	GATC	2 cut(s)	297, 665
BstMAI	GTCTC	4 cut(s)	100, 253, 275, 847
BstMBI	GATC	2 cut(s)	294, 662
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 737, 833
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	1 cut(s)	712
BstUI	CGCG	1 cut(s)	864
BstV1I	GCAGC	3 cut(s)	568, 695, 848
BstV2I	GAAGAC	2 cut(s)	189, 208
BtgI	CCRYGG	1 cut(s)	891
BtgZI	GCGATG	1 cut(s)	879
BveI	ACCTGC	2 cut(s)	334, 712
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	323
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	717, 842
CviAII	CATG	1 cut(s)	892
CviJI	RGCY	9 cut(s)	17, 149, 316, 412, 512, 566, 686, 793, 827
CviKI_1	RGCY	9 cut(s)	17, 149, 316, 412, 512, 566, 686, 793, 827
CviQI	GTAC	2 cut(s)	717, 842
DdeI	CTNAG	4 cut(s)	474, 561, 639, 698
DpnI	GATC	2 cut(s)	296, 664
DpnII	GATC	2 cut(s)	294, 662
Eam1104I	CTCTTC	7 cut(s)	37, 64, 79, 285, 306, 383, 438
EarI	CTCTTC	7 cut(s)	37, 64, 79, 285, 306, 383, 438
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	687, 891
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	687, 891
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	2 cut(s)	687, 891
Esp3I	CGTCTC	2 cut(s)	100, 253
FaeI	CATG	1 cut(s)	895
FaiI	YATR	8 cut(s)	321, 333, 347, 366, 384, 635, 678, 893
FatI	CATG	1 cut(s)	891
Fnu4HI	GCNGC	4 cut(s)	121, 582, 684, 837
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	121, 582, 684, 837
FspBI	CTAG	2 cut(s)	609, 755
GluI	GCNGC	4 cut(s)	121, 582, 684, 837
GsuI	CTGGAG	1 cut(s)	753
Hin1II	CATG	1 cut(s)	895
HinfI	GANTC	4 cut(s)	243, 374, 768, 885
HphI	GGTGA	5 cut(s)	350, 539, 683, 702, 703
Hpy188I	TCNGA	2 cut(s)	591, 667
Hpy188III	TCNNGA	3 cut(s)	236, 772, 904
Hpy99I	CGWCG	2 cut(s)	269, 281
HpyAV	CCTTC	3 cut(s)	118, 233, 263
HpyCH4III	ACNGT	1 cut(s)	858
HpyCH4V	TGCA	4 cut(s)	457, 779, 836, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 737, 833
HpyF3I	CTNAG	4 cut(s)	474, 561, 639, 698
Hsp92II	CATG	1 cut(s)	895
Kzo9I	GATC	2 cut(s)	294, 662
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	3 cut(s)	238, 680, 737
Lsp1109I	GCAGC	3 cut(s)	568, 695, 848
LweI	GCATC	3 cut(s)	20, 595, 684
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	2 cut(s)	609, 755
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	296, 664
MbiI	CCGCTC	1 cut(s)	740
MboI	GATC	2 cut(s)	294, 662
MfeI	CAATTG	2 cut(s)	228, 497
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	228, 497
MlyI	GAGTC	2 cut(s)	368, 777
Mph1103I	ATGCAT	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	714
MunI	CAATTG	2 cut(s)	228, 497
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	3 cut(s)	605, 737, 833
NcoI	CCATGG	1 cut(s)	891
NdeII	GATC	2 cut(s)	294, 662
NlaIII	CATG	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	243, 885
PflMI	CCANNNNNTGG	1 cut(s)	719
PkrI	GCNGC	4 cut(s)	122, 583, 685, 838
PleI	GAGTC	2 cut(s)	368, 776
PpsI	GAGTC	2 cut(s)	368, 776
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspPI	GGNCC	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	718, 843
RsaNI	GTAC	2 cut(s)	717, 842
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	121, 582, 684, 837
Sau3AI	GATC	2 cut(s)	294, 662
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	2 cut(s)	368, 777
ScrFI	CCNGG	1 cut(s)	714
SduI	GDGCHC	1 cut(s)	318
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	3 cut(s)	20, 595, 684
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	228, 497
SsiI	CCGC	6 cut(s)	118, 121, 204, 303, 740, 862
SspMI	CTAG	2 cut(s)	609, 755
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	2 cut(s)	687, 891
TaaI	ACNGT	1 cut(s)	858
TaqI	TCGA	5 cut(s)	155, 180, 219, 264, 771
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	2 cut(s)	228, 497
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	243, 885
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	581, 683, 836
Tsp45I	GTSAC	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	2 cut(s)	609, 755
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.