Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Forward (+)

5244825 .. 5248533

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08970.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATGGCCATGACCACAGCCTCGTCAACTCTCTCTTCCCTCTCCTCCCTCTCCCTACACACCTCTCCACGCCTCTCTCTCCACCCTTTCACCGCCACAAACACTTCGTCCCTAACCAAACTCAAGTCACCCATCTCTCTCTTCCTCTCTTCCTCTCCAAGCTTCATCTCCACTACATGCAATGCAGCCGAACAGCCCGAGATAGAGACCACCTTCTTCGACAACGACGACCCCGAGTACGAGGCCGTCTTCGAGCCCCCGGAGGCCCCGGAAGGCTTCGTCCCGCCGCCCTCCTTCGACGAGGAGTCGTTGGAGACGGAGGACGAAATAGCCGCGGCCTACGAGGAGCTCTACGGCCCTGCCTACAGTGGCATGACCGTTCTCGGGAACGACATCTATGTGATGGACGCAAAGGTGAAGAAGCTGGGGGCATTTGGGAAGTTGAAGAAGGAGAAGATCAGAGATGGGTTTGAGGAGAGAGTGGTACAAGTGAGGAGGGTGACTAAGGTTGTGAAAGGAGGGAAGCAGTTGCATTTTAGGGCTATAGTGGTGGTGGGTGACAAGCAAGGCAATGTGGGTGTTGGTGTGGGAAAGGCCAAGGAGGTCATTGGAGCGGTACAGAAATCTGCTGTGAATGCTAGGAGGAACATCATTACTGTGCCCATGACTAAGTACTTGACCTTTCCACACAGATCCGAGGGAGACTATGGAGCAGCCAAAGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCTGGAGGGTCTGTGAGAATTGTTCTAGAAATGGCAGGTGTTGAAAATGCTCTAGGAAAGCAACTTGGAAGTAAGAATGCTCTCAACAATGCCAGAGCCACCGTAGTTGCAGTACAGAAGATGAGACAGTTCCGTGAAGTAGCACTTGACCGTGGGATTCCAATGGAAGAGCTTTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

315

Amino Acids

33.91

Weight (kDa)

7.77

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	158 - 222	5.7e-23	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	788
Acc36I	ACCTGC	2 cut(s)	745, 788
AccBSI	CCGCTC	1 cut(s)	617
AccII	CGCG	1 cut(s)	338
AciI	CCGC	6 cut(s)	96, 287, 290, 336, 338, 617
AclWI	GGATC	1 cut(s)	690
AcoI	YGGCCR	2 cut(s)	3, 9
AfaI	GTAC	6 cut(s)	242, 489, 621, 677, 751, 876
AfiI	CCNNNNNNNGG	2 cut(s)	387, 752
AgsI	TTSAA	2 cut(s)	448, 806
AhdI	GACNNNNNGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	4 cut(s)	165, 352, 427, 934
AluI	AGCT	4 cut(s)	165, 352, 427, 934
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	4 cut(s)	203, 311, 699, 880
AlwI	GGATC	1 cut(s)	690
Ama87I	CYCGRG	3 cut(s)	200, 236, 386
AoxI	GGCC	7 cut(s)	3, 9, 246, 267, 339, 358, 597
ApeKI	GCWGC	2 cut(s)	188, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	2 cut(s)	268, 359
AsuC2I	CCSGG	2 cut(s)	263, 272
AsuHPI	GGTGA	5 cut(s)	85, 123, 430, 514, 572
AvaI	CYCGRG	3 cut(s)	200, 236, 386
BaeGI	GKGCMC	1 cut(s)	666
BaeI	ACNNNNGTAYC	2 cut(s)	741, 774
BalI	TGGCCA	2 cut(s)	5, 11
BanII	GRGCYC	2 cut(s)	261, 354
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	200, 728
BccI	CCATC	3 cut(s)	143, 400, 461
BceAI	ACGGC	2 cut(s)	233, 373
BciT130I	CCWGG	1 cut(s)	747
BcnI	CCSGG	2 cut(s)	263, 272
BcoDI	GTCTC	4 cut(s)	203, 311, 699, 880
BfaI	CTAG	3 cut(s)	642, 788, 815
BfmI	CTRYAG	2 cut(s)	367, 546
BfuAI	ACCTGC	2 cut(s)	745, 788
BisI	GCNGC	5 cut(s)	189, 290, 336, 339, 717
BlsI	GCNGC	5 cut(s)	190, 291, 337, 340, 718
BmcAI	AGTACT	1 cut(s)	677
Bme1390I	CCNGG	3 cut(s)	263, 272, 747
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmeT110I	CYCGRG	3 cut(s)	200, 236, 386
BmgT120I	GGNCC	2 cut(s)	268, 359
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	3 cut(s)	263, 272, 747
BmsI	GCATC	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	774, 786
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	263, 272
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	7 cut(s)	6, 261, 270, 336, 600, 699, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 752
Bse1I	ACTGG	1 cut(s)	757
Bse3DI	GCAATG	2 cut(s)	190, 580
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	7 cut(s)	6, 261, 270, 336, 600, 699, 913
BseLI	CCNNNNNNNGG	2 cut(s)	387, 752
BseMI	GCAATG	2 cut(s)	190, 580
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	5 cut(s)	37, 320, 362, 491, 511
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	2 cut(s)	200, 728
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	7 cut(s)	5, 11, 248, 269, 341, 360, 599
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	3 cut(s)	200, 236, 386
BsiSI	CCGG	2 cut(s)	263, 272
BslFI	GGGAC	2 cut(s)	97, 269
BslI	CCNNNNNNNGG	2 cut(s)	387, 752
BsmAI	GTCTC	4 cut(s)	203, 311, 699, 880
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	97, 269
BsmI	GAATGC	2 cut(s)	643, 844
BsnI	GGCC	7 cut(s)	5, 11, 248, 269, 341, 360, 599
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	3 cut(s)	200, 236, 386
Bsp1286I	GDGCHC	3 cut(s)	261, 354, 666
Bsp143I	GATC	2 cut(s)	459, 695
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	96, 287, 290, 336, 338, 617
BspANI	GGCC	7 cut(s)	5, 11, 248, 269, 341, 360, 599
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	2 cut(s)	745, 788
BspPI	GGATC	1 cut(s)	690
BspQI	GCTCTTC	1 cut(s)	924
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	190, 580
BsrI	ACTGG	1 cut(s)	757
BssECI	CCNNGG	7 cut(s)	6, 261, 270, 336, 600, 699, 913
BssMI	GATC	2 cut(s)	459, 695
BssT1I	CCWWGG	2 cut(s)	6, 600
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	6 cut(s)	371, 382, 661, 865, 891, 914
Bst6I	CTCTTC	4 cut(s)	43, 149, 157, 924
BstDEI	CTNAG	3 cut(s)	507, 672, 731
BstDSI	CCRYGG	3 cut(s)	6, 336, 913
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	462, 698
BstMAI	GTCTC	4 cut(s)	203, 311, 699, 880
BstMBI	GATC	2 cut(s)	459, 695
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	261, 270, 745
BstSFI	CTRYAG	2 cut(s)	367, 546
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	200, 728
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
BsuRI	GGCC	7 cut(s)	5, 11, 248, 269, 341, 360, 599
BtgI	CCRYGG	3 cut(s)	6, 336, 913
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	2 cut(s)	745, 788
Cfr13I	GGNCC	2 cut(s)	268, 359
Cfr42I	CCGCGG	1 cut(s)	339
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	6 cut(s)	241, 488, 620, 676, 750, 875
CspCI	CAANNNNNGTGG	2 cut(s)	850, 885
CviAII	CATG	5 cut(s)	7, 13, 180, 376, 667
CviQI	GTAC	6 cut(s)	241, 488, 620, 676, 750, 875
DdeI	CTNAG	3 cut(s)	507, 672, 731
DpnI	GATC	2 cut(s)	461, 697
DpnII	GATC	2 cut(s)	459, 695
DriI	GACNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	2 cut(s)	3, 9
Eam1104I	CTCTTC	4 cut(s)	43, 149, 157, 924
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EarI	CTCTTC	4 cut(s)	43, 149, 157, 924
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	6, 600
Eco24I	GRGCYC	2 cut(s)	261, 354
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	352
Eco88I	CYCGRG	3 cut(s)	200, 236, 386
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	6, 600
EcoT38I	GRGCYC	2 cut(s)	261, 354
ErhI	CCWWGG	2 cut(s)	6, 600
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	5 cut(s)	10, 16, 183, 379, 670
FaiI	YATR	8 cut(s)	8, 14, 181, 377, 402, 548, 668, 711
FalI	AAGNNNNNCTT	4 cut(s)	714, 746, 891, 923
FaqI	GGGAC	2 cut(s)	97, 269
FatI	CATG	5 cut(s)	6, 12, 179, 375, 666
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	189, 290, 336, 339, 717
FriOI	GRGCYC	2 cut(s)	261, 354
Fsp4HI	GCNGC	5 cut(s)	189, 290, 336, 339, 717
FspBI	CTAG	3 cut(s)	642, 788, 815
GluI	GCNGC	5 cut(s)	189, 290, 336, 339, 717
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	2 cut(s)	774, 786
HaeIII	GGCC	7 cut(s)	5, 11, 248, 269, 341, 360, 599
HapII	CCGG	2 cut(s)	263, 272
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	5 cut(s)	10, 16, 183, 379, 670
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	2 cut(s)	308, 919
HpaII	CCGG	2 cut(s)	263, 272
HphI	GGTGA	5 cut(s)	85, 123, 430, 514, 572
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	464, 700
Hpy188III	TCNNGA	2 cut(s)	388, 788
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	2 cut(s)	233, 305
HpyAV	CCTTC	4 cut(s)	226, 269, 307, 445
HpyCH4III	ACNGT	6 cut(s)	371, 382, 661, 865, 891, 914
HpyCH4V	TGCA	4 cut(s)	183, 188, 535, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	3 cut(s)	507, 672, 731
Hsp92II	CATG	5 cut(s)	10, 16, 183, 379, 670
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	459, 695
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	3 cut(s)	349, 614, 713
Lsp1109I	GCAGC	2 cut(s)	200, 728
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	3 cut(s)	642, 788, 815
MaeIII	GTNAC	3 cut(s)	129, 502, 560
MalI	GATC	2 cut(s)	461, 697
MbiI	CCGCTC	1 cut(s)	617
MboI	GATC	2 cut(s)	459, 695
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	3 cut(s)	261, 354, 666
MlsI	TGGCCA	2 cut(s)	5, 11
MluCI	AATT	1 cut(s)	780
MluNI	TGGCCA	2 cut(s)	5, 11
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	294
Mox20I	TGGCCA	2 cut(s)	5, 11
MscI	TGGCCA	2 cut(s)	5, 11
MslI	CAYNNNNRTG	3 cut(s)	11, 401, 659
Msp20I	TGGCCA	2 cut(s)	5, 11
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	263, 272
MspR9I	CCNGG	3 cut(s)	263, 272, 747
Mva1269I	GAATGC	2 cut(s)	643, 844
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	2 cut(s)	263, 272
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	459, 695
NlaIII	CATG	5 cut(s)	10, 16, 183, 379, 670
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	3 cut(s)	129, 502, 560
NspI	RCATGY	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	788
PciSI	GCTCTTC	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 234
PctI	GAATGC	2 cut(s)	643, 844
PfeI	GAWTC	1 cut(s)	919
PkrI	GCNGC	5 cut(s)	190, 291, 337, 340, 718
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	745
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	268, 359
PsuI	RGATCY	1 cut(s)	695
RsaI	GTAC	6 cut(s)	242, 489, 621, 677, 751, 876
RsaNI	GTAC	6 cut(s)	241, 488, 620, 676, 750, 875
RseI	CAYNNNNRTG	3 cut(s)	11, 401, 659
SacI	GAGCTC	1 cut(s)	354
SacII	CCGCGG	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	924
SatI	GCNGC	5 cut(s)	189, 290, 336, 339, 717
Sau3AI	GATC	2 cut(s)	459, 695
Sau96I	GGNCC	2 cut(s)	268, 359
ScaI	AGTACT	1 cut(s)	677
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	263, 272, 747
SduI	GDGCHC	3 cut(s)	261, 354, 666
SfaNI	GCATC	1 cut(s)	717
SfcI	CTRYAG	2 cut(s)	367, 546
Sfr303I	CCGCGG	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	339
SmiMI	CAYNNNNRTG	3 cut(s)	11, 401, 659
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	780
SsiI	CCGC	6 cut(s)	96, 287, 290, 336, 338, 617
SspMI	CTAG	3 cut(s)	642, 788, 815
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	261, 270, 745
StyI	CCWWGG	2 cut(s)	6, 600
TaaI	ACNGT	6 cut(s)	371, 382, 661, 865, 891, 914
TaqI	TCGA	3 cut(s)	222, 255, 300
TasI	AATT	1 cut(s)	780
TatI	WGTACW	2 cut(s)	675, 874
TauI	GCSGC	3 cut(s)	292, 338, 341
TfiI	GAWTC	1 cut(s)	919
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	3 cut(s)	129, 502, 560
TseI	GCWGC	2 cut(s)	188, 716
Tsp45I	GTSAC	3 cut(s)	129, 502, 560
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	2 cut(s)	335, 884
TspRI	CASTG	1 cut(s)	376
XbaI	TCTAGA	1 cut(s)	787
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	3 cut(s)	642, 788, 815
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.