Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

2363878 .. 2366276

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAATGTCCACAAGCTCTTCATCTCTCTCTTCTCTCTCCTCTCTCTCTCTCCACACCTCTCCACGCCTCTCTCTGTCCCCTTTCACAGCTGCCACCACCTCCATAACCAAACCCAAAAGACCCATTTCTCTTTTCCTCTCTTCCACCTCCTCGTCACGACCCACCACTGTTATCTTCAATGCCGCAGCAGCTGACGTCGAGACCTCCTTCTTCGACAACGAAGACCCCGAATTTGACGGAGTCTTCGAGCCCCCTGAGGTCCCAGAAGGCTTCGTTCCCCCACCTTCCTTCGACGACGAGTCGTCTGAGACCGAGGACGAGATCGCCGCAGCTTACGAGGAGCTGTACGGTCCAGCCTACAGTGGCGAGAGCGTTCTGGGCAATGACATCTACGTAATGGACTCTAACGTAAAAAAGACAGGTGCTTTTGGGAAATTGAAGAAGGAGAAGATCAGAGATGGGTTTGAGGAGAGGGTGGTTCAGGTGAGGAGGGTCACCAAGGTGGTTAAAGGAGGCAAGCAGTTGCATTTCAGAGCTATTGTGGTGGTCGGTGACAAGCAGGGCCAAGTGGGTGTTGGTGTTGGCAAAGCCAAGGAGGTTATTGGTGCGGTTCAAAAGTCTGCTGTGAATGCTAGAAGGAACATTATCAGTGTGCCCATGACTAAGTACCTCACTTTTCCTCATAGATCTGAGGGAGATTACGGAGCAGCCAAGGTAATGCTTAGACCTGCGTCTCCCGGTACTGGAGTTATTGCTGGAGGTTCTGTCAGAATCGTGCTCGAAATGGCAGGGGTAGAAAATGCTCTAGGAAAGCAACTGGGAAGCAAGAATGCTTTGAACAATGCCAGAGCGACTGTAGTTGGTATCCAGAAAATGCGACAGTTTAGTGATGTGGCTCGGGAACGTGGTATCCCCATGGAAGAGCTATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

313

Amino Acids

33.48

Weight (kDa)

8.6

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	739
AciI	CCGC	3 cut(s)	186, 330, 611
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	350, 671, 745
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	4 cut(s)	181, 442, 617, 841
AhdI	GACNNNNNGTC	2 cut(s)	301, 304
AleI	CACNNNNGTG	1 cut(s)	503
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	7 cut(s)	18, 92, 194, 335, 346, 539, 928
AluI	AGCT	7 cut(s)	18, 92, 194, 335, 346, 539, 928
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	197, 305, 741
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	900
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	5 cut(s)	92, 188, 191, 332, 710
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	4 cut(s)	218, 230, 250, 262
AspS9I	GGNCC	3 cut(s)	262, 353, 565
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	490, 499, 566
AvaI	CYCGRG	1 cut(s)	900
AvaII	GGWCC	2 cut(s)	262, 353
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	660
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	231, 238
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	5 cut(s)	79, 200, 203, 344, 722
BccI	CCATC	1 cut(s)	455
BciVI	GTATCC	2 cut(s)	878, 923
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	3 cut(s)	197, 305, 741
BfaI	CTAG	2 cut(s)	636, 809
BfmI	CTRYAG	2 cut(s)	361, 858
BfuAI	ACCTGC	1 cut(s)	739
BfuI	GTATCC	2 cut(s)	878, 923
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	7 cut(s)	93, 186, 189, 192, 330, 333, 711
BlsI	GCNGC	7 cut(s)	94, 187, 190, 193, 331, 334, 712
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	2 cut(s)	262, 353
BmeRI	GACNNNNNGTC	2 cut(s)	301, 304
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	3 cut(s)	262, 353, 565
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	741
BmrI	ACTGGG	1 cut(s)	830
BmuI	ACTGGG	1 cut(s)	830
BoxI	GACNNNNGTC	1 cut(s)	733
BpiI	GAAGAC	2 cut(s)	231, 238
BpmI	CTGGAG	2 cut(s)	768, 780
BpuMI	CCSGG	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	2 cut(s)	197, 305
BsaJI	CCNNGG	5 cut(s)	315, 501, 594, 714, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	751, 825
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	12, 391
BseDI	CCNNGG	5 cut(s)	315, 501, 594, 714, 918
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	2 cut(s)	12, 391
BseMII	CTCAG	3 cut(s)	249, 300, 684
BseNI	ACTGG	2 cut(s)	751, 825
BseRI	GAGGAG	5 cut(s)	31, 142, 356, 485, 505
BseSI	GKGCMC	1 cut(s)	660
BseXI	GCAGC	5 cut(s)	79, 200, 203, 344, 722
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	900
BsiSI	CCGG	1 cut(s)	741
BslFI	GGGAC	2 cut(s)	64, 248
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	3 cut(s)	197, 305, 741
BsmBI	CGTCTC	1 cut(s)	741
BsmFI	GGGAC	2 cut(s)	64, 248
BsmI	GAATGC	2 cut(s)	637, 838
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	2 cut(s)	197, 305
BsoBI	CYCGRG	1 cut(s)	900
Bsp1286I	GDGCHC	3 cut(s)	255, 660, 783
Bsp143I	GATC	3 cut(s)	324, 453, 689
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	3 cut(s)	186, 330, 611
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	250, 301, 685
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	739
BspQI	GCTCTTC	2 cut(s)	25, 918
BspTNI	GGTCTC	2 cut(s)	197, 305
BsrDI	GCAATG	2 cut(s)	12, 391
BsrI	ACTGG	2 cut(s)	751, 825
BssECI	CCNNGG	5 cut(s)	315, 501, 594, 714, 918
BssMI	GATC	3 cut(s)	324, 453, 689
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	4 cut(s)	501, 594, 714, 918
Bst4CI	ACNGT	5 cut(s)	172, 353, 365, 859, 885
Bst6I	CTCTTC	4 cut(s)	25, 37, 148, 918
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	5 cut(s)	258, 309, 666, 693, 725
BstDSI	CCRYGG	1 cut(s)	918
BstEII	GGTNACC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	327, 456, 692
BstMAI	GTCTC	3 cut(s)	197, 305, 741
BstMBI	GATC	3 cut(s)	324, 453, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 381, 632
BstPAI	GACNNNNGTC	1 cut(s)	733
BstPI	GGTNACC	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	2 cut(s)	361, 858
BstSLI	GKGCMC	1 cut(s)	660
BstSNI	TACGTA	1 cut(s)	397
BstV1I	GCAGC	5 cut(s)	79, 200, 203, 344, 722
BstV2I	GAAGAC	2 cut(s)	231, 238
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	2 cut(s)	878, 923
BsuRI	GGCC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	168, 370, 658
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	1 cut(s)	521
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	262, 353, 565
CseI	GACGC	1 cut(s)	723
Csp6I	GTAC	3 cut(s)	349, 670, 744
CviAII	CATG	2 cut(s)	661, 919
CviQI	GTAC	3 cut(s)	349, 670, 744
DdeI	CTNAG	5 cut(s)	258, 309, 666, 693, 725
DpnI	GATC	3 cut(s)	326, 455, 691
DpnII	GATC	3 cut(s)	324, 453, 689
DriI	GACNNNNNGTC	2 cut(s)	301, 304
Eam1104I	CTCTTC	4 cut(s)	25, 37, 148, 918
Eam1105I	GACNNNNNGTC	2 cut(s)	301, 304
EarI	CTCTTC	4 cut(s)	25, 37, 148, 918
Eco105I	TACGTA	1 cut(s)	397
Eco130I	CCWWGG	4 cut(s)	501, 594, 714, 918
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	2 cut(s)	197, 305
Eco47I	GGWCC	2 cut(s)	262, 353
Eco81I	CCTNAGG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	496
EcoT14I	CCWWGG	4 cut(s)	501, 594, 714, 918
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	4 cut(s)	501, 594, 714, 918
Esp3I	CGTCTC	1 cut(s)	741
FaeI	CATG	2 cut(s)	664, 922
FaiI	YATR	5 cut(s)	107, 662, 687, 920, 931
FaqI	GGGAC	2 cut(s)	64, 248
FatI	CATG	2 cut(s)	660, 918
Fnu4HI	GCNGC	7 cut(s)	93, 186, 189, 192, 330, 333, 711
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	7 cut(s)	93, 186, 189, 192, 330, 333, 711
FspBI	CTAG	2 cut(s)	636, 809
GluI	GCNGC	7 cut(s)	93, 186, 189, 192, 330, 333, 711
GsuI	CTGGAG	2 cut(s)	768, 780
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	741
HgaI	GACGC	1 cut(s)	723
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	664, 922
HinfI	GANTC	4 cut(s)	243, 302, 404, 774
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	3 cut(s)	490, 499, 566
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	5 cut(s)	310, 458, 536, 694, 773
Hpy188III	TCNNGA	4 cut(s)	159, 202, 871, 902
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	3 cut(s)	203, 299, 302
HpyAV	CCTTC	6 cut(s)	220, 263, 297, 301, 439, 633
HpyCH4III	ACNGT	5 cut(s)	172, 353, 365, 859, 885
HpyCH4IV	ACGT	4 cut(s)	198, 396, 411, 907
HpyCH4V	TGCA	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 381, 632
HpyF3I	CTNAG	5 cut(s)	258, 309, 666, 693, 725
HpySE526I	ACGT	4 cut(s)	198, 396, 411, 907
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	664, 922
Kzo9I	GATC	3 cut(s)	324, 453, 689
LguI	GCTCTTC	2 cut(s)	25, 918
LmnI	GCTCC	2 cut(s)	343, 707
Lsp1109I	GCAGC	5 cut(s)	79, 200, 203, 344, 722
MaeI	CTAG	2 cut(s)	636, 809
MaeII	ACGT	4 cut(s)	198, 396, 411, 907
MaeIII	GTNAC	3 cut(s)	156, 496, 554
MalI	GATC	3 cut(s)	326, 455, 691
MboI	GATC	3 cut(s)	324, 453, 689
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	3 cut(s)	255, 660, 783
MluCI	AATT	2 cut(s)	233, 437
MlyI	GAGTC	3 cut(s)	252, 311, 398
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	92, 194
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	637, 838
MwoI	GCNNNNNNNGC	3 cut(s)	191, 381, 632
NciI	CCSGG	1 cut(s)	741
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	3 cut(s)	324, 453, 689
NlaIII	CATG	2 cut(s)	664, 922
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	3 cut(s)	156, 496, 554
OliI	CACNNNNGTG	1 cut(s)	503
PciSI	GCTCTTC	2 cut(s)	25, 918
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 246
PctI	GAATGC	2 cut(s)	637, 838
PfeI	GAWTC	1 cut(s)	774
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	7 cut(s)	94, 187, 190, 193, 331, 334, 712
PleI	GAGTC	3 cut(s)	251, 310, 398
PpsI	GAGTC	3 cut(s)	251, 310, 398
Ppu21I	YACGTR	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	262
PspEI	GGTNACC	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	262, 353, 565
PspPPI	RGGWCCY	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	689
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	2 cut(s)	92, 194
RsaI	GTAC	3 cut(s)	350, 671, 745
RsaNI	GTAC	3 cut(s)	349, 670, 744
RseI	CAYNNNNRTG	1 cut(s)	503
SapI	GCTCTTC	2 cut(s)	25, 918
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	7 cut(s)	93, 186, 189, 192, 330, 333, 711
Sau3AI	GATC	3 cut(s)	324, 453, 689
Sau96I	GGNCC	3 cut(s)	262, 353, 565
SchI	GAGTC	3 cut(s)	252, 311, 398
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	3 cut(s)	255, 660, 783
SfcI	CTRYAG	2 cut(s)	361, 858
SinI	GGWCC	2 cut(s)	262, 353
SmiMI	CAYNNNNRTG	1 cut(s)	503
SnaBI	TACGTA	1 cut(s)	397
Sse9I	AATT	2 cut(s)	233, 437
SsiI	CCGC	3 cut(s)	186, 330, 611
SspMI	CTAG	2 cut(s)	636, 809
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	4 cut(s)	501, 594, 714, 918
TaaI	ACNGT	5 cut(s)	172, 353, 365, 859, 885
TaiI	ACGT	4 cut(s)	201, 399, 414, 910
TaqI	TCGA	5 cut(s)	201, 216, 249, 294, 783
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	233, 437
TauI	GCSGC	2 cut(s)	188, 332
TfiI	GAWTC	1 cut(s)	774
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	3 cut(s)	175, 370, 658
TseFI	GTSAC	3 cut(s)	156, 496, 554
TseI	GCWGC	5 cut(s)	92, 188, 191, 332, 710
Tsp45I	GTSAC	3 cut(s)	156, 496, 554
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	2 cut(s)	255, 720
TspRI	CASTG	3 cut(s)	175, 370, 658
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	262, 353
XapI	RAATTY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	2 cut(s)	636, 809
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.