Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Forward (+)

24550464 .. 24553143

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1115700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCATGTCCACAACCTCCTCCTCTCTCTCCTCTCTCTCTTCCCTCTCTCTCCACCCCTCTCCCCGCCTCTCCATCCTCCCATTCACCGCCGCAGCCACCCCGGCAACCAAACCCAGAAAACCCATTTCCCTCCTCCTGTCCTCTTCCCGACCCACCACCGTTATCTTCAATGCCGCAGCGGCCGACGTCGAGACCTCCTTCTTCGACAACGAGGACCCCGAATTCGACGGCGTGTTCGAGCCCCCGGAGGCCCCCGAAGACTTCGTCCCCCCGCCTTCCTTCGATGAGGATTCGACCGAGACTGAGGACGAAATTGCCGCCGCGTACGAGGAGCTGTACGGCCCTGCGTACAGCGGCGTGACCATGCTGGGGAATGACATTTACGTGATGGACTCGAAGGTGAAAAAGCTTGGGGCTTTTGGTAAGTTGAAGAAGGAGAAGGTTAGAGATGGGTTCGAGGAGAGGGTGGTTCAGGTGAGGAGGGTGACGAAGGTGGTGAAAGGAGGGAAGCAGCTGCATTTTCGGGCGATTGTGGTGGTCGGCGACAAGCAGGGCAATGTGGGTGTCGGCGTTGGGAAGGCCAAGGAGGTTATTGGGGCAGTGCAGAAGTCTGCGGTGAATGCGAGAAGGAACATTATCAGTGTGCCCATGACCAAGTACCTGACTTTTCCTCACAGATCTGAGGGAGATTATGGAGCAGCAAAGGTGATGCTGAGGCCCGCTTCTCCTGGTACTGGAGTTATCGCCGGAGGGTCCGTGAGAATAGTTCTCGAAATGGCAGGTGTCGAGAATGCTCTTGGGAAGCAACTTGGAAGTAAGAATGCTCTCAACAATGCTAGAGCCACTGTCGTTGCAGTACAGAAAATGAGGCAGTTCCGGGATGTCGCTCGTGAGCGTGGTATCCCGATGGAAGAGCTTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

310

Amino Acids

33.27

Weight (kDa)

9.08

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	153 - 217	6.9e-23	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	230 - 300	3.9e-25	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	773
AccII	CGCG	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	3, 183
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	6 cut(s)	329, 341, 353, 662, 736, 861
AfiI	CCNNNNNNNGG	2 cut(s)	372, 737
AgsI	TTSAA	2 cut(s)	172, 433
AjnI	CCWGG	1 cut(s)	730
AluBI	AGCT	4 cut(s)	337, 412, 517, 919
AluI	AGCT	4 cut(s)	337, 412, 517, 919
Alw26I	GTCTC	2 cut(s)	188, 296
AoxI	GGCC	6 cut(s)	3, 183, 252, 343, 582, 719
ApeKI	GCWGC	5 cut(s)	95, 179, 514, 517, 701
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	6 cut(s)	209, 221, 241, 252, 253, 284
AspS9I	GGNCC	5 cut(s)	217, 253, 344, 720, 756
AsuC2I	CCSGG	3 cut(s)	104, 248, 881
AsuHPI	GGTGA	7 cut(s)	79, 415, 490, 499, 511, 631, 721
AvaII	GGWCC	2 cut(s)	217, 756
BaeGI	GKGCMC	1 cut(s)	651
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	5 cut(s)	107, 191, 504, 526, 713
BccI	CCATC	4 cut(s)	83, 385, 446, 904
BceAI	ACGGC	2 cut(s)	247, 358
BciT130I	CCWGG	1 cut(s)	732
BciVI	GTATCC	1 cut(s)	914
BcnI	CCSGG	3 cut(s)	104, 248, 881
BcoDI	GTCTC	2 cut(s)	188, 296
BfaI	CTAG	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	914
BglI	GCCNNNNNGGC	2 cut(s)	104, 182
BglII	AGATCT	1 cut(s)	680
Bme1390I	CCNGG	4 cut(s)	104, 248, 732, 881
Bme18I	GGWCC	2 cut(s)	217, 756
BmgT120I	GGNCC	5 cut(s)	217, 253, 344, 720, 756
BmiI	GGNNCC	3 cut(s)	219, 255, 757
BmrFI	CCNGG	4 cut(s)	104, 248, 732, 881
BmsI	GCATC	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	716
BpuMI	CCSGG	3 cut(s)	104, 248, 881
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	102, 246, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 737
Bse1I	ACTGG	1 cut(s)	742
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	102, 246, 585
BseGI	GGATG	2 cut(s)	75, 889
BseLI	CCNNNNNNNGG	2 cut(s)	372, 737
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	3 cut(s)	297, 675, 707
BseNI	ACTGG	1 cut(s)	742
BseRI	GAGGAG	7 cut(s)	10, 13, 22, 125, 347, 476, 496
BseSI	GKGCMC	1 cut(s)	651
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	107, 191, 504, 526, 713
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	326
Bsh1285I	CGRYCG	2 cut(s)	186, 300
BshFI	GGCC	6 cut(s)	5, 185, 254, 345, 584, 721
BsiEI	CGRYCG	2 cut(s)	186, 300
BsiSI	CCGG	4 cut(s)	104, 248, 750, 880
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	372, 737
BsmAI	GTCTC	2 cut(s)	188, 296
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	3 cut(s)	628, 799, 829
BsnI	GGCC	6 cut(s)	5, 185, 254, 345, 584, 721
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	246, 651
Bsp143I	GATC	1 cut(s)	680
BspANI	GGCC	6 cut(s)	5, 185, 254, 345, 584, 721
BspCNI	CTCAG	3 cut(s)	298, 676, 708
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	219, 255, 757
BspMI	ACCTGC	1 cut(s)	773
BspQI	GCTCTTC	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	742
BssECI	CCNNGG	3 cut(s)	102, 246, 585
BssMI	GATC	1 cut(s)	680
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	891
BssT1I	CCWWGG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	163, 850
Bst6I	CTCTTC	3 cut(s)	46, 151, 909
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	3 cut(s)	306, 684, 716
BstF5I	GGATG	2 cut(s)	75, 889
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	683
BstMAI	GTCTC	2 cut(s)	188, 296
BstMBI	GATC	1 cut(s)	680
BstMCI	CGRYCG	2 cut(s)	186, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 182, 623
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	4 cut(s)	102, 246, 730, 879
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	5 cut(s)	107, 191, 504, 526, 713
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BstZI	CGGCCG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	6 cut(s)	5, 185, 254, 345, 584, 721
BtsCI	GGATG	2 cut(s)	75, 889
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	609, 649, 846
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	723
Cfr13I	GGNCC	5 cut(s)	217, 253, 344, 720, 756
Csp6I	GTAC	6 cut(s)	328, 340, 352, 661, 735, 860
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	3 cut(s)	7, 367, 652
CviQI	GTAC	6 cut(s)	328, 340, 352, 661, 735, 860
DdeI	CTNAG	3 cut(s)	306, 684, 716
DpnI	GATC	1 cut(s)	682
DpnII	GATC	1 cut(s)	680
EaeI	YGGCCR	2 cut(s)	3, 183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	46, 151, 909
EarI	CTCTTC	3 cut(s)	46, 151, 909
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	217, 756
Eco52I	CGGCCG	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	217, 253
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	3 cut(s)	10, 370, 655
FaiI	YATR	4 cut(s)	8, 368, 653, 696
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	3 cut(s)	6, 366, 651
FauI	CCCGC	3 cut(s)	74, 282, 730
FokI	GGATG	2 cut(s)	62, 896
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	840
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	6 cut(s)	5, 185, 254, 345, 584, 721
HapII	CCGG	4 cut(s)	104, 248, 750, 880
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	10, 370, 655
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	2 cut(s)	293, 395
HpaII	CCGG	4 cut(s)	104, 248, 750, 880
HphI	GGTGA	7 cut(s)	79, 415, 490, 499, 511, 631, 721
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	685
Hpy188III	TCNNGA	6 cut(s)	150, 193, 773, 790, 893, 907
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	3 cut(s)	191, 194, 233
HpyAV	CCTTC	9 cut(s)	211, 288, 292, 394, 430, 436, 487, 574, 624
HpyCH4III	ACNGT	2 cut(s)	163, 850
HpyCH4IV	ACGT	2 cut(s)	189, 387
HpyCH4V	TGCA	3 cut(s)	520, 607, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 182, 623
HpyF3I	CTNAG	3 cut(s)	306, 684, 716
HpySE526I	ACGT	2 cut(s)	189, 387
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	10, 370, 655
Kzo9I	GATC	1 cut(s)	680
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	2 cut(s)	334, 698
Lsp1109I	GCAGC	5 cut(s)	107, 191, 504, 526, 713
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	2 cut(s)	189, 387
MaeIII	GTNAC	2 cut(s)	361, 487
MalI	GATC	1 cut(s)	682
MboI	GATC	1 cut(s)	680
MboII	GAAGA	7 cut(s)	33, 138, 160, 196, 272, 445, 926
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	2 cut(s)	246, 651
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	224, 315
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	389
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	182, 357, 517
MspI	CCGG	4 cut(s)	104, 248, 750, 880
MspR9I	CCNGG	4 cut(s)	104, 248, 732, 881
Mva1269I	GAATGC	3 cut(s)	628, 799, 829
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	104, 182, 623
NciI	CCSGG	3 cut(s)	104, 248, 881
NdeII	GATC	1 cut(s)	680
NlaIII	CATG	3 cut(s)	10, 370, 655
NlaIV	GGNNCC	3 cut(s)	219, 255, 757
NmuCI	GTSAC	2 cut(s)	361, 487
PaqCI	CACCTGC	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 237
PctI	GAATGC	3 cut(s)	628, 799, 829
PfeI	GAWTC	1 cut(s)	293
Pfl23II	CGTACG	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	879
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	730
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	219, 255, 757
PspPI	GGNCC	5 cut(s)	217, 253, 344, 720, 756
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	6 cut(s)	329, 341, 353, 662, 736, 861
RsaNI	GTAC	6 cut(s)	328, 340, 352, 661, 735, 860
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	909
Sau3AI	GATC	1 cut(s)	680
Sau96I	GGNCC	5 cut(s)	217, 253, 344, 720, 756
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	104, 248, 732, 881
SduI	GDGCHC	2 cut(s)	246, 651
SfaNI	GCATC	1 cut(s)	702
SinI	GGWCC	2 cut(s)	217, 756
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	224, 315
SspMI	CTAG	1 cut(s)	840
StyD4I	CCNGG	4 cut(s)	102, 246, 730, 879
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	163, 850
TaiI	ACGT	2 cut(s)	192, 390
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	224, 315
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	6 cut(s)	95, 179, 185, 323, 326, 360
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	3 cut(s)	609, 649, 853
TseFI	GTSAC	2 cut(s)	361, 487
TseI	GCWGC	5 cut(s)	95, 179, 514, 517, 701
Tsp45I	GTSAC	2 cut(s)	361, 487
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	3 cut(s)	609, 649, 853
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	217, 756
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	840
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.