Rh5AG067100

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002833
Physical Location & Seq
Reverse (-)
5614682 .. 5618947
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG067100.1

Sequence Viewer

Length: 1596 bp
ATGTCACCATTTTGCCCTAACTGTGACCGAGAACCTGAGTTTTGGGGTGCTGAATTGAAATCTGGCGAGAAGTTGAAAGTGAAGCCAGATGCCGGCGTGGTTTTGCATCTCACACAGGCATGTGTGGGCTTAAATCAAAGATGTCATGGTGTCGTTTATGTGAGCATCGGGGAAGAGAGAAGAGTCTTGGGAAGTCTCTTGCCACCAAGAGTACCTCAATTTTCCTGCGATCTGGTCTTTGACCAAGAATTTCTGCTTTCACACAACTTGGAGATGGGAAGCGTCTTCTTTGCCGTAACTGTTTCCTTGACCACAATTGCTGTGTTGTGTTCTGTCACTAAGCTTGAGGAAACAAAGCAAACTACAAGTAAGACCAAATCTTCTGATGAGAATCCAATCTTTGAGGAAAAGAGAGAGCCTCTTAGGCAAGCAAGGCCAGCAATAGGGAAGACCAGATCTTCTGTTAAGAATCCAGTCATTGAGGAAAATAGAGTACCTATTGACAAAGCTGACTTTGTTGTGCGCCCACTGGTGGTGAGAAGGCCAGAGAACATAAGTAAGGAGCTCGAATTCTATAGAACTATTTTTGAGGCTGAACCGATTGCTGGCCCCCAGATTGGGTCTGAAAGATCACACGAGTTCAAGATTGGAAATAATTCATTATATGTTGTTGCTGCTTCGACTATTGAGGAACTTGAGCCTCTTGGGCCTGCTCTTTGTGTGGAGACGGGAGATGTAGCAACTTTTATTGAGAAAGCGAAAAATGCTGGGTGGGAGTGCTCCGTCCTTGAAAGACACCCCAAACAAGAAACAATGAAGAAGAGCAGCAAACAAAAATTCATATGCCCTACAATGCTATTTTATGAAGATGAGTTTGATGAGGCAGTTGCAAATTATGAGGCTGTTTTCGGAAGGTCTCAGGGCTCGTTCTTTCAGTTGTTCCGGAGACGATCTACCTCTTTTTCAGACTGCCTCTATGCTGCAGCAGCCAAGGATAGGGGTATTGGCAGTTCTACATGTCTCTGCATAGAGCCGGAGGATATTGTCATTTTCATGGAGTCGTTCTTTAATTTGAAGTCATCCGTAGATTTCTTCTATCTCAATTGTGAAGTGGTTCTACATGACTGGGGAAAGACAGTTGTGAGATTGATATCTCCTAAGCGTAGTCACACTCTTTATGTGTACAGCAGCAAGCCAGTATTGACTGTGCTCTCATGTAACGTAAAGCATGGTGCTATACAGCCACTGATTCAGTTCCTTGGCTCAGTCAGTCAAGTAAAATGGGTCAAAATCCATGTAGATGAAATTCCTCGTTGCTTGTCCTTCCCTTACCCGGATTTTCTGATTATTGGTGATGAGAAGATACTTACTCTTGAGAGGATGGAAAAAAAATTGTCTTCAAGGAAGTCGGATACCAAGATATTGCAGGTTCATGGGCAACCAGTATCAGAAGACATGAAAAGATTGTTGAACAGGCATGAAGCAAAATATGTAGGTTTGCCTTTGACAATTGAGAATGTTGAACAAATTTATTCAAGTCTTTCTACTCCAAAATCAGACAAGTGGGTCTATCTTCCTCACTTAGAATGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

60.07

Weight (kDa)

6.5

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 14 - 89 4.2e-10 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1565
Acc36I ACCTGC 1 cut(s) 1417
AccIII TCCGGA 1 cut(s) 942
AcsI RAATTY 5 cut(s) 248, 569, 836, 1305, 1527
AfaI GTAC 3 cut(s) 213, 495, 1184
AfiI CCNNNNNNNGG 8 cut(s) 92, 443, 532, 605, 617, 618, 996, 1333
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 9 cut(s) 58, 76, 643, 791, 1075, 1401, 1471, 1523, 1536
AluBI AGCT 3 cut(s) 343, 509, 565
AluI AGCT 3 cut(s) 343, 509, 565
Alw21I GWGCWC 3 cut(s) 567, 782, 1212
Alw26I GTCTC 5 cut(s) 200, 719, 921, 940, 1025
AlwNI CAGNNNCTG 1 cut(s) 1246
Aor13HI TCCGGA 1 cut(s) 942
AoxI GGCC 4 cut(s) 434, 542, 607, 707
ApeKI GCWGC 6 cut(s) 674, 825, 980, 983, 986, 1188
ApoI RAATTY 5 cut(s) 248, 569, 836, 1305, 1527
Asp700I GAANNNNTTC 2 cut(s) 655, 1113
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 608, 707
AsuC2I CCSGG 1 cut(s) 1334
AsuHPI GGTGA 2 cut(s) 547, 1364
BanII GRGCYC 2 cut(s) 567, 926
BarI GAAGNNNNNNTAC 2 cut(s) 1101, 1133
BauI CACGAG 1 cut(s) 635
BbsI GAAGAC 4 cut(s) 277, 455, 1389, 1458
Bbv12I GWGCWC 3 cut(s) 567, 782, 1212
BbvI GCAGC 6 cut(s) 661, 837, 967, 995, 998, 1200
BccI CCATC 2 cut(s) 268, 1375
BceAI ACGGC 1 cut(s) 278
BciVI GTATCC 1 cut(s) 1405
BcnI CCSGG 1 cut(s) 1334
BcoDI GTCTC 5 cut(s) 200, 719, 921, 940, 1025
BfmI CTRYAG 2 cut(s) 574, 981
BfuAI ACCTGC 1 cut(s) 1417
BfuI GTATCC 1 cut(s) 1405
BglI GCCNNNNNGGC 2 cut(s) 424, 706
BglII AGATCT 1 cut(s) 455
BisI GCNGC 6 cut(s) 675, 826, 981, 984, 987, 1189
BlsI GCNGC 6 cut(s) 676, 827, 982, 985, 988, 1190
Bme1390I CCNGG 1 cut(s) 1334
BmgT120I GGNCC 2 cut(s) 608, 707
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 1 cut(s) 1334
BmrI ACTGGG 1 cut(s) 1135
BmsI GCATC 3 cut(s) 79, 115, 174
BmuI ACTGGG 1 cut(s) 1135
BpiI GAAGAC 4 cut(s) 277, 455, 1389, 1458
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu10I CCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 3 cut(s) 365, 716, 1394
BpuMI CCSGG 1 cut(s) 1334
BsaBI GATNNNNATC 2 cut(s) 390, 1150
BsaI GGTCTC 1 cut(s) 921
BsaJI CCNNGG 2 cut(s) 990, 1258
BsaWI WCCGGW 1 cut(s) 942
Bsc4I CCNNNNNNNGG 8 cut(s) 92, 443, 532, 605, 617, 618, 996, 1333
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 5 cut(s) 473, 534, 1130, 1196, 1442
Bse8I GATNNNNATC 2 cut(s) 390, 1150
BseAI TCCGGA 1 cut(s) 942
BseDI CCNNGG 2 cut(s) 990, 1258
BseGI GGATG 2 cut(s) 1079, 1386
BseJI GATNNNNATC 2 cut(s) 390, 1150
BseLI CCNNNNNNNGG 8 cut(s) 92, 443, 532, 605, 617, 618, 996, 1333
BseMII CTCAG 3 cut(s) 27, 932, 1278
BseNI ACTGG 5 cut(s) 473, 534, 1130, 1196, 1442
BseXI GCAGC 6 cut(s) 661, 837, 967, 995, 998, 1200
BseYI CCCAGC 1 cut(s) 767
BshFI GGCC 4 cut(s) 436, 544, 609, 709
BsiHKAI GWGCWC 3 cut(s) 567, 782, 1212
BsiSI CCGG 4 cut(s) 93, 943, 1034, 1334
BslI CCNNNNNNNGG 8 cut(s) 92, 443, 532, 605, 617, 618, 996, 1333
BsmAI GTCTC 5 cut(s) 200, 719, 921, 940, 1025
BsmBI CGTCTC 2 cut(s) 719, 940
BsnI GGCC 4 cut(s) 436, 544, 609, 709
Bso31I GGTCTC 1 cut(s) 921
Bsp1286I GDGCHC 4 cut(s) 567, 782, 926, 1212
Bsp13I TCCGGA 1 cut(s) 942
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 4 cut(s) 229, 455, 629, 950
BspANI GGCC 4 cut(s) 436, 544, 609, 709
BspCNI CTCAG 3 cut(s) 28, 931, 1277
BspEI TCCGGA 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 610
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 1417
BspQI GCTCTTC 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 5 cut(s) 473, 534, 1130, 1196, 1442
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 990, 1258
BssMI GATC 4 cut(s) 229, 455, 629, 950
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 2 cut(s) 990, 1258
Bst2BI CACGAG 1 cut(s) 635
Bst4CI ACNGT 4 cut(s) 23, 301, 1138, 1207
Bst6I CTCTTC 3 cut(s) 168, 175, 815
BstAUI TGTACA 1 cut(s) 1182
BstC8I GCNNGC 6 cut(s) 94, 429, 438, 607, 711, 1193
BstDEI CTNAG 7 cut(s) 36, 339, 422, 918, 1158, 1264, 1582
BstF5I GGATG 2 cut(s) 1079, 1386
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 4 cut(s) 232, 458, 632, 953
BstMAI GTCTC 5 cut(s) 200, 719, 921, 940, 1025
BstMBI GATC 4 cut(s) 229, 455, 629, 950
BstMWI GCNNNNNNNGC 6 cut(s) 424, 433, 437, 706, 764, 986
BstNSI RCATGY 2 cut(s) 123, 1020
BstSCI CCNGG 1 cut(s) 1332
BstSFI CTRYAG 2 cut(s) 574, 981
BstV1I GCAGC 6 cut(s) 661, 837, 967, 995, 998, 1200
BstV2I GAAGAC 4 cut(s) 277, 455, 1389, 1458
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuI GTATCC 1 cut(s) 1405
BsuRI GGCC 4 cut(s) 436, 544, 609, 709
BtsCI GGATG 2 cut(s) 1079, 1386
BtsIMutI CAGTG 2 cut(s) 527, 1244
BveI ACCTGC 1 cut(s) 1417
Cac8I GCNNGC 6 cut(s) 94, 429, 438, 607, 711, 1193
CaiI CAGNNNCTG 1 cut(s) 1246
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 608, 707
CseI GACGC 1 cut(s) 271
Csp6I GTAC 3 cut(s) 212, 494, 1183
CviQI GTAC 3 cut(s) 212, 494, 1183
DdeI CTNAG 7 cut(s) 36, 339, 422, 918, 1158, 1264, 1582
DpnI GATC 4 cut(s) 231, 457, 631, 952
DpnII GATC 4 cut(s) 229, 455, 629, 950
DrdI GACNNNNNNGTC 1 cut(s) 1565
DseDI GACNNNNNNGTC 1 cut(s) 1565
Eam1104I CTCTTC 3 cut(s) 168, 175, 815
EarI CTCTTC 3 cut(s) 168, 175, 815
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 990, 1258
Eco24I GRGCYC 2 cut(s) 567, 926
Eco31I GGTCTC 1 cut(s) 921
Eco32I GATATC 1 cut(s) 1152
Eco53kI GAGCTC 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 569
EcoRV GATATC 1 cut(s) 1152
EcoT14I CCWWGG 2 cut(s) 990, 1258
EcoT38I GRGCYC 2 cut(s) 567, 926
ErhI CCWWGG 2 cut(s) 990, 1258
Esp3I CGTCTC 2 cut(s) 719, 940
FauNDI CATATG 1 cut(s) 842
Fnu4HI GCNGC 6 cut(s) 675, 826, 981, 984, 987, 1189
FokI GGATG 2 cut(s) 1066, 1393
FriOI GRGCYC 2 cut(s) 567, 926
Fsp4HI GCNGC 6 cut(s) 675, 826, 981, 984, 987, 1189
GlaI GCGC 1 cut(s) 524
GluI GCNGC 6 cut(s) 675, 826, 981, 984, 987, 1189
GsaI CCCAGC 1 cut(s) 771
HaeIII GGCC 4 cut(s) 436, 544, 609, 709
HapII CCGG 4 cut(s) 93, 943, 1034, 1334
HgaI GACGC 1 cut(s) 271
HhaI GCGC 1 cut(s) 525
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 5 cut(s) 183, 391, 469, 1058, 1249
HpaII CCGG 4 cut(s) 93, 943, 1034, 1334
HphI GGTGA 2 cut(s) 547, 1364
Hpy166II GTNNAC 1 cut(s) 1183
Hpy188I TCNGA 8 cut(s) 385, 625, 911, 967, 1344, 1411, 1450, 1558
Hpy188III TCNNGA 3 cut(s) 643, 943, 1373
Hpy8I GTNNAC 1 cut(s) 1183
HpyAV CCTTC 3 cut(s) 534, 906, 1333
HpyCH4III ACNGT 4 cut(s) 23, 301, 1138, 1207
HpyCH4IV ACGT 1 cut(s) 1221
HpyCH4V TGCA 5 cut(s) 106, 890, 983, 1026, 1426
HpyF10VI GCNNNNNNNGC 6 cut(s) 424, 433, 437, 706, 764, 986
HpyF3I CTNAG 7 cut(s) 36, 339, 422, 918, 1158, 1264, 1582
HpySE526I ACGT 1 cut(s) 1221
HspAI GCGC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 942
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 229, 455, 629, 950
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 2 cut(s) 562, 785
Lsp1109I GCAGC 6 cut(s) 661, 837, 967, 995, 998, 1200
LweI GCATC 3 cut(s) 79, 115, 174
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 6 cut(s) 3, 23, 295, 334, 1166, 1217
MalI GATC 4 cut(s) 231, 457, 631, 952
MboI GATC 4 cut(s) 229, 455, 629, 950
MfeI CAATTG 3 cut(s) 315, 1102, 1509
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 4 cut(s) 567, 782, 926, 1212
MlyI GAGTC 2 cut(s) 192, 1067
MmeI TCCRAC 1 cut(s) 1389
MroI TCCGGA 1 cut(s) 942
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 2 cut(s) 655, 1113
MseI TTAA 3 cut(s) 131, 465, 1068
MslI CAYNNNNRTG 3 cut(s) 118, 1052, 1299
MspI CCGG 4 cut(s) 93, 943, 1034, 1334
MspR9I CCNGG 1 cut(s) 1334
MunI CAATTG 3 cut(s) 315, 1102, 1509
MwoI GCNNNNNNNGC 6 cut(s) 424, 433, 437, 706, 764, 986
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 1334
NdeI CATATG 1 cut(s) 842
NdeII GATC 4 cut(s) 229, 455, 629, 950
NgoMIV GCCGGC 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 610
NmuCI GTSAC 4 cut(s) 3, 23, 334, 1166
NspI RCATGY 2 cut(s) 123, 1020
PciI ACATGT 1 cut(s) 1016
PciSI GCTCTTC 1 cut(s) 815
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 655, 1113
PfeI GAWTC 3 cut(s) 391, 469, 1249
PkrI GCNGC 6 cut(s) 676, 827, 982, 985, 988, 1190
PleI GAGTC 2 cut(s) 191, 1066
PpsI GAGTC 2 cut(s) 191, 1066
PscI ACATGT 1 cut(s) 1016
Psp124BI GAGCTC 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 767
PspN4I GGNNCC 1 cut(s) 610
PspPI GGNCC 2 cut(s) 608, 707
PsrI GAACNNNNNNTAC 2 cut(s) 994, 1026
PstI CTGCAG 1 cut(s) 985
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 3 cut(s) 213, 495, 1184
RsaNI GTAC 3 cut(s) 212, 494, 1183
RseI CAYNNNNRTG 3 cut(s) 118, 1052, 1299
SacI GAGCTC 1 cut(s) 567
SapI GCTCTTC 1 cut(s) 815
SaqAI TTAA 3 cut(s) 131, 465, 1068
SatI GCNGC 6 cut(s) 675, 826, 981, 984, 987, 1189
Sau3AI GATC 4 cut(s) 229, 455, 629, 950
Sau96I GGNCC 2 cut(s) 608, 707
SchI GAGTC 2 cut(s) 192, 1067
ScrFI CCNGG 1 cut(s) 1334
SduI GDGCHC 4 cut(s) 567, 782, 926, 1212
SfaNI GCATC 3 cut(s) 79, 115, 174
SfcI CTRYAG 2 cut(s) 574, 981
SmiMI CAYNNNNRTG 3 cut(s) 118, 1052, 1299
SmlI CTYRAG 3 cut(s) 344, 695, 1373
SmoI CTYRAG 3 cut(s) 344, 695, 1373
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 1332
StyI CCWWGG 2 cut(s) 990, 1258
TaaI ACNGT 4 cut(s) 23, 301, 1138, 1207
TaiI ACGT 1 cut(s) 1224
TaqI TCGA 2 cut(s) 567, 680
TaqII GACCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 1182
TfiI GAWTC 3 cut(s) 391, 469, 1249
Tru1I TTAA 3 cut(s) 131, 465, 1068
Tru9I TTAA 3 cut(s) 131, 465, 1068
TscAI CASTG 2 cut(s) 534, 1251
TseFI GTSAC 4 cut(s) 3, 23, 334, 1166
TseI GCWGC 6 cut(s) 674, 825, 980, 983, 986, 1188
Tsp45I GTSAC 4 cut(s) 3, 23, 334, 1166
TspDTI ATGAA 9 cut(s) 648, 829, 830, 879, 1042, 1317, 1421, 1472, 1494
TspGWI ACGGA 2 cut(s) 772, 1072
TspRI CASTG 2 cut(s) 534, 1251
XapI RAATTY 5 cut(s) 248, 569, 836, 1305, 1527
XceI RCATGY 2 cut(s) 123, 1020
XmnI GAANNNNTTC 2 cut(s) 655, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.