Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

59573190 .. 59573629

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0438300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATTCACCACAACTGGGTCGACGCTAGCGGCGTCCTCAGCGTGTTGCTCGGCGGCGGAGCTAGCAACACGTCGTGGGCGAACAACCACTTCATGTATTGGGTTTTGCTGGAAATGGCAGAGCGATTGTCTGAGATGGAAAAGGAGGAGCGTTTGCCTGGGAATTACTGGAAGGAGGTGTGGATTAAGAATGTGTTTGAAGCTTGGGAGAAGAAGAATGGTAGGATGAAGGCAAAGTTAGAAGAGGAATTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

85

Amino Acids

10.06

Weight (kDa)

5.37

Isoelectric Point (pI)

20.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	3 cut(s)	30, 54, 57
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	200, 254
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	62, 203
AluI	AGCT	2 cut(s)	62, 203
ApoI	RAATTY	1 cut(s)	248
AsuNHI	GCTAGC	2 cut(s)	26, 62
BbvCI	CCTCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	2 cut(s)	27, 63
BisI	GCNGC	2 cut(s)	31, 55
BlsI	GCNGC	2 cut(s)	32, 56
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	25
BmtI	GCTAGC	2 cut(s)	30, 66
BmuI	ACTGGG	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	20, 173
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	52, 123
BseNI	ACTGG	2 cut(s)	20, 173
BseRI	GAGGAG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	16
BspACI	CCGC	3 cut(s)	30, 54, 57
BspCNI	CTCAG	2 cut(s)	51, 124
BspOI	GCTAGC	2 cut(s)	30, 66
BsrI	ACTGG	2 cut(s)	20, 173
BssECI	CCNNGG	1 cut(s)	158
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	28, 64
BstDEI	CTNAG	2 cut(s)	38, 132
BstF5I	GGATG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 63
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	28, 64
CseI	GACGC	2 cut(s)	22, 32
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	2 cut(s)	62, 203
CviKI_1	RGCY	2 cut(s)	62, 203
DdeI	CTNAG	2 cut(s)	38, 132
DraIII	CACNNNGTG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	31, 55
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	31, 55
FspBI	CTAG	2 cut(s)	27, 63
GluI	GCNGC	2 cut(s)	31, 55
HgaI	GACGC	2 cut(s)	22, 32
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	2 cut(s)	26, 76
HpyAV	CCTTC	2 cut(s)	166, 223
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 63
HpyF3I	CTNAG	2 cut(s)	38, 132
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	59, 148
LpnPI	CCDG	4 cut(s)	95, 144, 154, 171
MaeI	CTAG	2 cut(s)	27, 63
MaeII	ACGT	1 cut(s)	71
MboII	GAAGA	3 cut(s)	223, 226, 254
MluCI	AATT	2 cut(s)	163, 248
MnlI	CCTC	4 cut(s)	47, 139, 169, 238
MseI	TTAA	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	39, 63
NheI	GCTAGC	2 cut(s)	26, 62
NlaIII	CATG	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 77
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	32, 56
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	31, 55
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	4 cut(s)	64, 74, 180, 205
Sse9I	AATT	2 cut(s)	163, 248
SsiI	CCGC	3 cut(s)	30, 54, 57
SspMI	CTAG	2 cut(s)	27, 63
StyD4I	CCNGG	1 cut(s)	157
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	163, 248
TauI	GCSGC	2 cut(s)	33, 57
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	82, 242
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	27, 63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.