Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

6572836 .. 6574736

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031598

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCATGACCACAACCTCCTCATCTCTCTCTTCCCTCTCCTCCCTCTCCCTCAACTCTTCTCCACACCATTCCCTCCTCCTCCCTTTCACCACTTCCTTCCCCAAACCCCCAAAACCCATCTCTCTCTTCCTCTCCTCTCCACGACCCACCACCCCCATCCCCAATGCCGAACCACCCCACATCGAAACCACCTTCTTCTCCACCGACGACCCCGAATACGACCCCGTCTTCGACCCCCCGGAGCCCCCGGAAGGCTTCGTCCCGCCGCCCTCGTTCGACGACGAGCCGTTGGAGACAGAGGAGCAAATCGCCAAAGCTTATGAGGAGCTCTACGGGCCGGCCTACAGCGGCGTCAGCGTTCTGGGCAATGACGTGTACGTGATGGACTCGAAGGTGAGAAAGTTGGGTGCTTTTGGGAAAGTGAAGAAGGAGAGGATGCGAGATGGGTTTGAGGAGAGAGTGGTGGAGGTGAGGAGAGTGACCAAGGTTGTGAAAGGAGGGAAGCAATTGCATTTCAGGGTTATAGTGGTGGTGGGTGACAAGAGAGGTTGTGTGGGTGTGGGTGTGGGCAAGGCTAAGGAGGTTATTGATGGGGTTCAGAAGGCTGCTGTCAATGCTAGGAGGAACATTGTCACTGTCCCCATGACCAAGTACTTGACTTTTCCTCATAGATCTGAGGGAGATTATGGAGCAGCCAAAGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCTGGAGGGTCCGTGAGAATTGTTCTAGAAATGGCAGGTGTTGAAAATGCTCTAGGAAAGCAACTTGGAAGTAAGAATGCTCTCAACAATGCCAGAGCCACCGTAGTTGCAGTACAGAAAATGAGACAGTTCCGTGAAGTCGCACTTGACCGTGGGATTCCAATGGAAGAGCTTTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

308

Amino Acids

33.4

Weight (kDa)

8.99

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	151 - 215	9e-23	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	228 - 298	2.1e-24	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	767
Acc36I	ACCTGC	2 cut(s)	724, 767
AciI	CCGC	3 cut(s)	266, 269, 351
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	4 cut(s)	380, 656, 730, 855
AfiI	CCNNNNNNNGG	2 cut(s)	254, 731
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	1 cut(s)	785
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	3 cut(s)	320, 331, 913
AluI	AGCT	3 cut(s)	320, 331, 913
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	290, 859
AoxI	GGCC	3 cut(s)	3, 338, 342
ApeKI	GCWGC	2 cut(s)	608, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	2 cut(s)	338, 750
AsuC2I	CCSGG	2 cut(s)	242, 251
AsuHPI	GGTGA	4 cut(s)	82, 409, 484, 551
AvaII	GGWCC	1 cut(s)	750
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	249, 333
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	595, 707
BccI	CCATC	5 cut(s)	128, 167, 379, 440, 587
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	242, 251
BcoDI	GTCTC	2 cut(s)	290, 859
BfaI	CTAG	3 cut(s)	621, 767, 794
BfmI	CTRYAG	1 cut(s)	346
BfuAI	ACCTGC	2 cut(s)	724, 767
BglII	AGATCT	1 cut(s)	674
BisI	GCNGC	4 cut(s)	269, 352, 609, 696
BlsI	GCNGC	4 cut(s)	270, 353, 610, 697
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	3 cut(s)	242, 251, 726
Bme18I	GGWCC	1 cut(s)	750
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	338, 750
BmiI	GGNNCC	2 cut(s)	246, 751
BmrFI	CCNGG	3 cut(s)	242, 251, 726
BmsI	GCATC	2 cut(s)	429, 696
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	753, 765
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	242, 251
BsaAI	YACGTR	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	240, 249, 486, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 731
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	4 cut(s)	240, 249, 486, 892
BseGI	GGATG	2 cut(s)	159, 444
BseLI	CCNNNNNNNGG	2 cut(s)	254, 731
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	9 cut(s)	10, 31, 68, 71, 127, 317, 341, 470, 490
BseXI	GCAGC	2 cut(s)	595, 707
BshFI	GGCC	3 cut(s)	5, 340, 344
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	242, 251, 341
BslFI	GGGAC	2 cut(s)	248, 626
BslI	CCNNNNNNNGG	2 cut(s)	254, 731
BsmAI	GTCTC	2 cut(s)	290, 859
BsmFI	GGGAC	2 cut(s)	248, 626
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	3 cut(s)	5, 340, 344
Bsp1286I	GDGCHC	2 cut(s)	249, 333
Bsp143I	GATC	1 cut(s)	674
BspACI	CCGC	3 cut(s)	266, 269, 351
BspANI	GGCC	3 cut(s)	5, 340, 344
BspCNI	CTCAG	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	246, 751
BspMI	ACCTGC	2 cut(s)	724, 767
BspQI	GCTCTTC	1 cut(s)	903
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	4 cut(s)	240, 249, 486, 892
BssMI	GATC	1 cut(s)	674
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	4 cut(s)	640, 844, 870, 893
Bst6I	CTCTTC	4 cut(s)	37, 64, 134, 903
BstACI	GRCGYC	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	579, 678, 710
BstDSI	CCRYGG	1 cut(s)	892
BstF5I	GGATG	2 cut(s)	159, 444
BstKTI	GATC	1 cut(s)	677
BstMAI	GTCTC	2 cut(s)	290, 859
BstMBI	GATC	1 cut(s)	674
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 357, 366, 617
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	3 cut(s)	240, 249, 724
BstSFI	CTRYAG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	595, 707
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	3 cut(s)	5, 340, 344
BtgI	CCRYGG	1 cut(s)	892
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	159, 444
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	2 cut(s)	724, 767
Cac8I	GCNNGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	338, 750
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	4 cut(s)	379, 655, 729, 854
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	2 cut(s)	7, 646
CviQI	GTAC	4 cut(s)	379, 655, 729, 854
DdeI	CTNAG	3 cut(s)	579, 678, 710
DpnI	GATC	1 cut(s)	676
DpnII	GATC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	37, 64, 134, 903
EarI	CTCTTC	4 cut(s)	37, 64, 134, 903
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	249, 333
Eco47I	GGWCC	1 cut(s)	750
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	249, 333
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	10, 649
FaiI	YATR	6 cut(s)	8, 324, 527, 647, 672, 690
FalI	AAGNNNNNCTT	4 cut(s)	693, 725, 870, 902
FaqI	GGGAC	2 cut(s)	248, 626
FatI	CATG	2 cut(s)	6, 645
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	269, 352, 609, 696
FokI	GGATG	2 cut(s)	146, 451
FriOI	GRGCYC	2 cut(s)	249, 333
FseI	GGCCGGCC	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	269, 352, 609, 696
FspBI	CTAG	3 cut(s)	621, 767, 794
GluI	GCNGC	4 cut(s)	269, 352, 609, 696
GsuI	CTGGAG	2 cut(s)	753, 765
HaeIII	GGCC	3 cut(s)	5, 340, 344
HapII	CCGG	3 cut(s)	242, 251, 341
HgaI	GACGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	10, 649
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	2 cut(s)	389, 898
HpaII	CCGG	3 cut(s)	242, 251, 341
HphI	GGTGA	4 cut(s)	82, 409, 484, 551
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	603, 679
Hpy188III	TCNNGA	1 cut(s)	767
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	3 cut(s)	212, 284, 287
HpyAV	CCTTC	6 cut(s)	109, 205, 248, 388, 424, 598
HpyCH4III	ACNGT	4 cut(s)	640, 844, 870, 893
HpyCH4IV	ACGT	2 cut(s)	375, 381
HpyCH4V	TGCA	2 cut(s)	514, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 357, 366, 617
HpyF3I	CTNAG	3 cut(s)	579, 678, 710
HpySE526I	ACGT	2 cut(s)	375, 381
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	10, 649
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	674
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	4 cut(s)	244, 304, 328, 692
Lsp1109I	GCAGC	2 cut(s)	595, 707
LweI	GCATC	2 cut(s)	429, 696
MaeI	CTAG	3 cut(s)	621, 767, 794
MaeII	ACGT	2 cut(s)	375, 381
MaeIII	GTNAC	3 cut(s)	481, 539, 634
MalI	GATC	1 cut(s)	676
MboI	GATC	1 cut(s)	674
MboII	GAAGA	7 cut(s)	24, 51, 121, 190, 223, 439, 920
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	2 cut(s)	249, 333
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	509, 759
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	273
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	3 cut(s)	242, 251, 341
MspR9I	CCNGG	3 cut(s)	242, 251, 726
MunI	CAATTG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	4 cut(s)	337, 357, 366, 617
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	2 cut(s)	242, 251
NdeII	GATC	1 cut(s)	674
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	10, 649
NlaIV	GGNNCC	2 cut(s)	246, 751
NmuCI	GTSAC	3 cut(s)	481, 539, 634
PaqCI	CACCTGC	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	903
PctI	GAATGC	1 cut(s)	823
PdiI	GCCGGC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	898
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	270, 353, 610, 697
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	246, 751
PspPI	GGNCC	2 cut(s)	338, 750
PsuI	RGATCY	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	227
RigI	GGCCGGCC	1 cut(s)	344
RsaI	GTAC	4 cut(s)	380, 656, 730, 855
RsaNI	GTAC	4 cut(s)	379, 655, 729, 854
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	903
SatI	GCNGC	4 cut(s)	269, 352, 609, 696
Sau3AI	GATC	1 cut(s)	674
Sau96I	GGNCC	2 cut(s)	338, 750
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	3 cut(s)	242, 251, 726
SduI	GDGCHC	2 cut(s)	249, 333
SfaNI	GCATC	2 cut(s)	429, 696
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	1 cut(s)	750
Sse9I	AATT	2 cut(s)	509, 759
SsiI	CCGC	3 cut(s)	266, 269, 351
SspMI	CTAG	3 cut(s)	621, 767, 794
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	240, 249, 724
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	4 cut(s)	640, 844, 870, 893
TaiI	ACGT	2 cut(s)	378, 384
TaqI	TCGA	4 cut(s)	186, 234, 279, 392
TasI	AATT	2 cut(s)	509, 759
TatI	WGTACW	2 cut(s)	654, 853
TauI	GCSGC	2 cut(s)	271, 354
TfiI	GAWTC	1 cut(s)	898
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	3 cut(s)	481, 539, 634
TseI	GCWGC	2 cut(s)	608, 695
Tsp45I	GTSAC	3 cut(s)	481, 539, 634
TspGWI	ACGGA	2 cut(s)	742, 863
TspRI	CASTG	1 cut(s)	643
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	750
XbaI	TCTAGA	1 cut(s)	766
XspI	CTAG	3 cut(s)	621, 767, 794
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.