Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Forward (+)

6374623 .. 6384667

Gene Structure 10045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGTCACCATTTTGCCCTAACTGTGACCGAGAACCTGAGTTTTGGGGTGCTGAATTGAAATCTGGCGAGAAGTTGAAAGTGAAGCCAGATGCCGGCGTGGTTTTGCATCTCACACAGGCATGTGTGGGCTTAAATCAAAGATGTCATGGTGTCGTTTATGTGAGCATCGGGGAAGAGAGAAGAGTCTTGGGAAGTCTCTTGCCACCAAGAGTACCTCAATTTTCCTGCGATCTGGTCTTTGACCAAGAATTTCTGCTTTCACACAACTTGGAGATGGGAAGCGTCTTCTTTGCCGTAACTGTTTCCTTGACCACAATTGCTGTGTTGTGTTCTGTCACTAAGCTTGAGGAAACAAAGCAAACTACAAGTAAGACCAAATCTTCTGATGAGAATCCAATCTTTGAGGAAAAGAGAGAGCCTCTTAGGCAAGCAAGGCCAGCAATAGGGAAGACCAGATCTTCTGTTAAGAATCCAGTCATTGAGGAAAATAGAGTACCTATTGACAAAGCTGACTTTGTTGTGCGCCCACTGGTGGTGAGAAGGCCAGAGAACATAAGTAAGGAGCTCGAATTCTATAGAACTATTTTTGAGGCTGAACCGATTGCTGGCCCCCAGATTGGGTCTGAAAGATCACACGAGTTCAAGATTGGAAATAATTCATTATATGTTGTTGCTGCTTCGACTATTGAGGAACTTGAGCCTCTTGGGCCTGCTCTTTGTGTGGAGACGGGAGATGTAGCAACTTTTATTGAGAAAGCGAAAAATGCTGGGTGGGAGTGCTCCGTCCTTGAAAGGTATCGGCCCAATATCACGCCAGATGATAAGTTGAGTGGCACTAGAATGAGAACTAAATTCGGTCAGATCTGTTACATCTGTCAGACACCCCAAACAAGAAACAATGAAGAAGAGCAGCAAACAAAAATTAAGTCCATATGCCCTACAATGCTATTTTATGAAGATGAGTTTGATGAGGCAGTTGCAAATTATGAGGCTGTTTTCGGAAGGTCTCAGGGCTCGTTCTTTCAGTTGTTCCGGAGACGATCTACCTCTTTTTCAGACTGCCTCTATGCTGCAGCCAAGGATAGGGGTATTGGCAGTTCTACATGTCTCTGCATAGAGCCGGAGGATATTGTCATTTTCATGGAGTCGTTCTTTAATTTGAAGTCATCCGTAGATTTCTTCTATCTCAATTGTGAAGTGGTTCTACATGACTGGGGAAAGACAGTTGTGAGATTGATATCTCCTAAGCGTAGTCACACTCTTTATGTGTACAGCAGCAAGCCATTATTGACTGTGCTCTCATGTAACGTAAAGCATGGTGCTATACAGCCACTGATTCAGTTCCTTGGCTCAGTCAGTCAAGTAAAATGGGTCAAAATCCATGTAGATGAAATTCCTCGTTGCTTGTCCTTCCCTTACCCGGATTTGCTGATTATTGGTGATGAGAAGATACTTACTCTTGAGAGGATGGAAAAAAAATTGTCTTCAAGGAAGTCGGATACCAAGATATTGCAGGTTCATGGGCAACCAGTATCAGAAGACATGAAAAGATTGTTGAACAGGCATGAAGCAAAATATTTTTTCTATGCAAGTTCAAGTCCTGATGTCTCAAAACTTCCGAGCCTCATCGACAAACAATGCGTTGTGTTGATGATCAAGACCAGACCCACCATAGCCGCCACTCCAAGCACGGCCATCACAGCGCGGTTGTCAACCGGAAACCCGAACACCAAAACAAACATCATTGTCTTGTTAATGCACGATGACTCACCCATCCTCCAAGTTTCGATCGGCCTTTGGGATAAGCCCCTTCTTCTCTCTCGATATCCAAAACCCAATCCTTGGTTCACTATCACAAACCACTCCACCACCATGGCCATGACCACAGCCTCTTCAACTCTCTCTTCCTTCTCCTCCCTCTCCCTCCACACCTCTCCACGCCTCTCTCTTCTCCCTTTCACCGCCACGAAAACTTCCCTGACCAAACTCAAGTCTCCCATTTCTCTCTTCCTCTCTTCCTCTCCACGCCTTACCACCACTACATGCAATGCCGAACAACCCGAGATAGAGACCACCTTCTTCGACAACGACGACCCAGAGTACGAGGCCGTCTTCGAGCCCCCGGAGGCCCCGGAAGGCTTCGTCCCCCCGCCCTCCTTCGACGAGGGGTCGTTGGAGACGGAGGACGAAGTAGCCGCGGCCTACGAGGAGCTCTACGGCCCCGCCTACAGCGGCATGAGCGTTCTCGGGAACGACATCTATGTGATGGACGCCAAGGTGAAGAAGCTGGGCGCTTTTGGGAAGTTGAAGAAGGAGAAGATCAGAGATGGGTTTGAGGAGAGAGTGGTTCAGGTGAGGAGGGTGACTAAGGTTGTGAAAGGAGGGAAGCAGTTGCATTTTAGGGCTGTAGTGGTGGTGGGTGACAAGCAAGGTAATGTGGGTGTTGGTGTGGGAAAGGCCAAGGAGGTCATTGGAGCGGTTCAGAAGTCCGCTGTCAATGCTAGAAGGAACATCATCACTGTGCCCATGACCAAGTACTTGACCTTTCCTCACAGATCTGAGGGAGATTATGGAGCAGCCAAAGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCTGGAGGGTCCGTGAGAATTGTTCTAGAAATGGCAGGTGTTGAAAATGCTCTAGGAAAGCAACTTGGAAGTAAGAATGCTCTCAACAATGCCAGAGCCACAGTAGTTGCAGTACAGAAAATGAGACAGTTCCGTGAAGTCGCACTTGACCGTGGGATTCCAATGGAAGAGCTTTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

934

Amino Acids

103.85

Weight (kDa)

8.33

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	14 - 89	9.3e-10	Nucleoplasmin-like domain
Ribosomal_S5	PF00333	778 - 842	5.4e-22	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	855 - 925	1.1e-23	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2648
Acc36I	ACCTGC	3 cut(s)	1504, 2605, 2648
AccB7I	CCANNNNNTGG	1 cut(s)	1842
AccBSI	CCGCTC	1 cut(s)	2477
AccII	CGCG	2 cut(s)	1705, 2198
AccIII	TCCGGA	1 cut(s)	1032
AcoI	YGGCCR	2 cut(s)	1692, 1875
AcsI	RAATTY	4 cut(s)	248, 569, 851, 1392
AcyI	GRCGYC	1 cut(s)	2271
AfaI	GTAC	7 cut(s)	213, 495, 1271, 2102, 2537, 2611, 2736
AflIII	ACRYGT	1 cut(s)	1103
AhdI	GACNNNNNGTC	1 cut(s)	2167
AjnI	CCWGG	1 cut(s)	2605
AjuI	GAANNNNNNNTTGG	2 cut(s)	1829, 1861
AluBI	AGCT	6 cut(s)	343, 509, 565, 2212, 2287, 2794
AluI	AGCT	6 cut(s)	343, 509, 565, 2212, 2287, 2794
Alw21I	GWGCWC	4 cut(s)	567, 782, 1299, 2214
AlwNI	CAGNNNCTG	1 cut(s)	1333
Ama87I	CYCGRG	2 cut(s)	2060, 2246
Aor13HI	TCCGGA	1 cut(s)	1032
ApeKI	GCWGC	6 cut(s)	674, 910, 1070, 1073, 1275, 2576
ApoI	RAATTY	4 cut(s)	248, 569, 851, 1392
ArsI	GACNNNNNNTTYG	2 cut(s)	911, 943
Asp700I	GAANNNNTTC	2 cut(s)	655, 1200
AspLEI	GCGC	3 cut(s)	525, 1705, 2294
AspS9I	GGNCC	6 cut(s)	608, 707, 801, 2128, 2219, 2631
AsuC2I	CCSGG	3 cut(s)	1421, 2123, 2132
AsuHPI	GGTGA	8 cut(s)	547, 1451, 1761, 1951, 2290, 2365, 2374, 2432
AvaI	CYCGRG	2 cut(s)	2060, 2246
AvaII	GGWCC	1 cut(s)	2631
BaeGI	GKGCMC	1 cut(s)	2526
BaeI	ACNNNNGTAYC	2 cut(s)	2601, 2634
BalI	TGGCCA	1 cut(s)	1877
BanII	GRGCYC	4 cut(s)	567, 1016, 2121, 2214
BarI	GAAGNNNNNNTAC	2 cut(s)	1188, 1220
BauI	CACGAG	1 cut(s)	635
BbsI	GAAGAC	5 cut(s)	277, 455, 1476, 1545, 2104
Bbv12I	GWGCWC	4 cut(s)	567, 782, 1299, 2214
BbvI	GCAGC	6 cut(s)	661, 922, 1057, 1085, 1287, 2588
BccI	CCATC	6 cut(s)	268, 1462, 1703, 1781, 2260, 2321
BceAI	ACGGC	4 cut(s)	278, 1707, 2093, 2233
BciT130I	CCWGG	1 cut(s)	2607
BciVI	GTATCC	1 cut(s)	1492
BclI	TGATCA	1 cut(s)	1653
BcnI	CCSGG	3 cut(s)	1421, 2123, 2132
BfaI	CTAG	4 cut(s)	837, 2502, 2648, 2675
BfmI	CTRYAG	4 cut(s)	574, 1071, 2227, 2406
BfoI	RGCGCY	1 cut(s)	2295
BfuAI	ACCTGC	3 cut(s)	1504, 2605, 2648
BfuI	GTATCC	1 cut(s)	1492
BglI	GCCNNNNNGGC	2 cut(s)	424, 706
BglII	AGATCT	3 cut(s)	455, 861, 2555
BmcAI	AGTACT	1 cut(s)	2537
Bme1390I	CCNGG	4 cut(s)	1421, 2123, 2132, 2607
Bme18I	GGWCC	1 cut(s)	2631
BmeRI	GACNNNNNGTC	1 cut(s)	2167
BmeT110I	CYCGRG	2 cut(s)	2060, 2246
BmgT120I	GGNCC	6 cut(s)	608, 707, 801, 2128, 2219, 2631
BmiI	GGNNCC	4 cut(s)	610, 2130, 2221, 2632
BmrFI	CCNGG	4 cut(s)	1421, 2123, 2132, 2607
BmrI	ACTGGG	1 cut(s)	1222
BmsI	GCATC	4 cut(s)	79, 115, 174, 2577
BmuI	ACTGGG	1 cut(s)	1222
BpiI	GAAGAC	5 cut(s)	277, 455, 1476, 1545, 2104
BplI	GAGNNNNNCTC	2 cut(s)	403, 435
BpmI	CTGGAG	2 cut(s)	2634, 2646
Bpu10I	CCTNAGC	1 cut(s)	1245
BpuEI	CTTGAG	4 cut(s)	365, 716, 1481, 1973
BpuMI	CCSGG	3 cut(s)	1421, 2123, 2132
BsaBI	GATNNNNATC	2 cut(s)	390, 1237
BsaHI	GRCGYC	1 cut(s)	2271
BsaI	GGTCTC	2 cut(s)	1011, 2063
BsaWI	WCCGGW	2 cut(s)	1032, 1715
BsaXI	ACNNNNNCTCC	4 cut(s)	1761, 1791, 2619, 2649
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	5 cut(s)	473, 534, 1217, 1529, 2617
Bse3DI	GCAATG	1 cut(s)	2053
Bse8I	GATNNNNATC	2 cut(s)	390, 1237
BseAI	TCCGGA	1 cut(s)	1032
BseBI	CCWGG	1 cut(s)	2607
BseGI	GGATG	3 cut(s)	1166, 1473, 1773
BseJI	GATNNNNATC	2 cut(s)	390, 1237
BseMI	GCAATG	1 cut(s)	2053
BseMII	CTCAG	4 cut(s)	27, 1022, 1365, 2550
BseNI	ACTGG	5 cut(s)	473, 534, 1217, 1529, 2617
BseRI	GAGGAG	4 cut(s)	1903, 2222, 2351, 2371
BseSI	GKGCMC	1 cut(s)	2526
BseXI	GCAGC	6 cut(s)	661, 922, 1057, 1085, 1287, 2588
BseYI	CCCAGC	2 cut(s)	767, 2287
Bsh1236I	CGCG	2 cut(s)	1705, 2198
Bsh1285I	CGRYCG	1 cut(s)	1791
BsiEI	CGRYCG	1 cut(s)	1791
BsiHKAI	GWGCWC	4 cut(s)	567, 782, 1299, 2214
BsiHKCI	CYCGRG	2 cut(s)	2060, 2246
BsiSI	CCGG	7 cut(s)	93, 1033, 1121, 1421, 1716, 2123, 2132
BslFI	GGGAC	1 cut(s)	2129
BsmBI	CGTCTC	3 cut(s)	719, 1030, 2171
BsmFI	GGGAC	1 cut(s)	2129
BsmI	GAATGC	1 cut(s)	2704
Bso31I	GGTCTC	2 cut(s)	1011, 2063
BsoBI	CYCGRG	2 cut(s)	2060, 2246
Bsp1286I	GDGCHC	7 cut(s)	567, 782, 1016, 1299, 2121, 2214, 2526
Bsp13I	TCCGGA	1 cut(s)	1032
Bsp1407I	TGTACA	1 cut(s)	1269
Bsp143I	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
Bsp19I	CCATGG	1 cut(s)	1872
BspCNI	CTCAG	4 cut(s)	28, 1021, 1364, 2551
BspEI	TCCGGA	1 cut(s)	1032
BspFNI	CGCG	2 cut(s)	1705, 2198
BspLI	GGNNCC	4 cut(s)	610, 2130, 2221, 2632
BspMAI	CTGCAG	1 cut(s)	1075
BspMI	ACCTGC	3 cut(s)	1504, 2605, 2648
BspQI	GCTCTTC	2 cut(s)	900, 2784
BspTNI	GGTCTC	2 cut(s)	1011, 2063
BsrBI	CCGCTC	1 cut(s)	2477
BsrDI	GCAATG	1 cut(s)	2053
BsrFI	RCCGGY	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	1269
BsrI	ACTGG	5 cut(s)	473, 534, 1217, 1529, 2617
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
BssNI	GRCGYC	1 cut(s)	2271
BssSI	CACGAG	1 cut(s)	635
BssT1I	CCWWGG	6 cut(s)	1077, 1345, 1841, 1872, 2274, 2460
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	2607
Bst4CI	ACNGT	8 cut(s)	23, 301, 1225, 1294, 2521, 2725, 2751, 2774
Bst6I	CTCTTC	9 cut(s)	168, 175, 900, 1897, 1909, 1953, 2012, 2020, 2784
BstACI	GRCGYC	1 cut(s)	2271
BstAUI	TGTACA	1 cut(s)	1269
BstC8I	GCNNGC	6 cut(s)	94, 429, 438, 607, 711, 1280
BstDEI	CTNAG	9 cut(s)	36, 339, 422, 1008, 1245, 1351, 2367, 2559, 2591
BstDSI	CCRYGG	3 cut(s)	1872, 2196, 2773
BstF5I	GGATG	3 cut(s)	1166, 1473, 1773
BstFNI	CGCG	2 cut(s)	1705, 2198
BstH2I	RGCGCY	1 cut(s)	2295
BstHHI	GCGC	3 cut(s)	525, 1705, 2294
BstKTI	GATC	9 cut(s)	232, 458, 632, 864, 1043, 1656, 1791, 2322, 2558
BstMBI	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
BstMCI	CGRYCG	1 cut(s)	1791
BstMWI	GCNNNNNNNGC	8 cut(s)	424, 433, 437, 706, 764, 1700, 2238, 2498
BstNI	CCWGG	1 cut(s)	2607
BstNSI	RCATGY	3 cut(s)	123, 1107, 2046
BstSCI	CCNGG	4 cut(s)	1419, 2121, 2130, 2605
BstSFI	CTRYAG	4 cut(s)	574, 1071, 2227, 2406
BstSLI	GKGCMC	1 cut(s)	2526
BstUI	CGCG	2 cut(s)	1705, 2198
BstV1I	GCAGC	6 cut(s)	661, 922, 1057, 1085, 1287, 2588
BstV2I	GAAGAC	5 cut(s)	277, 455, 1476, 1545, 2104
BstX2I	RGATCY	3 cut(s)	455, 861, 2555
BstXI	CCANNNNNNTGG	1 cut(s)	1873
BstYI	RGATCY	3 cut(s)	455, 861, 2555
BsuI	GTATCC	1 cut(s)	1492
BtgI	CCRYGG	3 cut(s)	1872, 2196, 2773
BtsCI	GGATG	3 cut(s)	1166, 1473, 1773
BtsIMutI	CAGTG	3 cut(s)	527, 1331, 2517
BveI	ACCTGC	3 cut(s)	1504, 2605, 2648
Cac8I	GCNNGC	6 cut(s)	94, 429, 438, 607, 711, 1280
CaiI	CAGNNNCTG	1 cut(s)	1333
CfoI	GCGC	3 cut(s)	525, 1705, 2294
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	6 cut(s)	608, 707, 801, 2128, 2219, 2631
Cfr42I	CCGCGG	1 cut(s)	2199
CseI	GACGC	2 cut(s)	271, 2279
Csp6I	GTAC	7 cut(s)	212, 494, 1270, 2101, 2536, 2610, 2735
CspCI	CAANNNNNGTGG	2 cut(s)	2710, 2745
CviQI	GTAC	7 cut(s)	212, 494, 1270, 2101, 2536, 2610, 2735
DdeI	CTNAG	9 cut(s)	36, 339, 422, 1008, 1245, 1351, 2367, 2559, 2591
DpnI	GATC	9 cut(s)	231, 457, 631, 863, 1042, 1655, 1790, 2321, 2557
DpnII	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
DriI	GACNNNNNGTC	1 cut(s)	2167
EaeI	YGGCCR	2 cut(s)	1692, 1875
Eam1104I	CTCTTC	9 cut(s)	168, 175, 900, 1897, 1909, 1953, 2012, 2020, 2784
Eam1105I	GACNNNNNGTC	1 cut(s)	2167
EarI	CTCTTC	9 cut(s)	168, 175, 900, 1897, 1909, 1953, 2012, 2020, 2784
Ecl136II	GAGCTC	2 cut(s)	565, 2212
Eco130I	CCWWGG	6 cut(s)	1077, 1345, 1841, 1872, 2274, 2460
Eco24I	GRGCYC	4 cut(s)	567, 1016, 2121, 2214
Eco31I	GGTCTC	2 cut(s)	1011, 2063
Eco32I	GATATC	2 cut(s)	1239, 1826
Eco47I	GGWCC	1 cut(s)	2631
Eco53kI	GAGCTC	2 cut(s)	565, 2212
Eco88I	CYCGRG	2 cut(s)	2060, 2246
EcoICRI	GAGCTC	2 cut(s)	565, 2212
EcoO109I	RGGNCCY	1 cut(s)	2128
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	2605
EcoRV	GATATC	2 cut(s)	1239, 1826
EcoT14I	CCWWGG	6 cut(s)	1077, 1345, 1841, 1872, 2274, 2460
EcoT38I	GRGCYC	4 cut(s)	567, 1016, 2121, 2214
ErhI	CCWWGG	6 cut(s)	1077, 1345, 1841, 1872, 2274, 2460
Esp3I	CGTCTC	3 cut(s)	719, 1030, 2171
FalI	AAGNNNNNCTT	4 cut(s)	2574, 2606, 2751, 2783
FaqI	GGGAC	1 cut(s)	2129
FauI	CCCGC	2 cut(s)	2157, 2230
FauNDI	CATATG	1 cut(s)	932
FbaI	TGATCA	1 cut(s)	1653
FokI	GGATG	3 cut(s)	1153, 1480, 1760
FriOI	GRGCYC	4 cut(s)	567, 1016, 2121, 2214
FspBI	CTAG	4 cut(s)	837, 2502, 2648, 2675
GlaI	GCGC	3 cut(s)	524, 1704, 2293
GsaI	CCCAGC	2 cut(s)	771, 2291
GsuI	CTGGAG	2 cut(s)	2634, 2646
HaeII	RGCGCY	1 cut(s)	2295
HapII	CCGG	7 cut(s)	93, 1033, 1121, 1421, 1716, 2123, 2132
HgaI	GACGC	2 cut(s)	271, 2279
HhaI	GCGC	3 cut(s)	525, 1705, 2294
Hin1I	GRCGYC	1 cut(s)	2271
Hin6I	GCGC	3 cut(s)	523, 1703, 2292
HinP1I	GCGC	3 cut(s)	523, 1703, 2292
HincII	GTYRAC	1 cut(s)	1713
HindII	GTYRAC	1 cut(s)	1713
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	7 cut(s)	183, 391, 469, 1145, 1336, 1766, 2779
HpaII	CCGG	7 cut(s)	93, 1033, 1121, 1421, 1716, 2123, 2132
HphI	GGTGA	8 cut(s)	547, 1451, 1761, 1951, 2290, 2365, 2374, 2432
Hpy166II	GTNNAC	3 cut(s)	1270, 1713, 1848
Hpy188III	TCNNGA	8 cut(s)	643, 1033, 1460, 1601, 1657, 1821, 2248, 2648
Hpy8I	GTNNAC	3 cut(s)	1270, 1713, 1848
Hpy99I	CGWCG	2 cut(s)	2093, 2165
HpyCH4III	ACNGT	8 cut(s)	23, 301, 1225, 1294, 2521, 2725, 2751, 2774
HpyCH4IV	ACGT	1 cut(s)	1308
HpyF10VI	GCNNNNNNNGC	8 cut(s)	424, 433, 437, 706, 764, 1700, 2238, 2498
HpyF3I	CTNAG	9 cut(s)	36, 339, 422, 1008, 1245, 1351, 2367, 2559, 2591
HpySE526I	ACGT	1 cut(s)	1308
Hsp92I	GRCGYC	1 cut(s)	2271
HspAI	GCGC	3 cut(s)	523, 1703, 2292
Kpn2I	TCCGGA	1 cut(s)	1032
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	1653
KspI	CCGCGG	1 cut(s)	2199
Kzo9I	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
LguI	GCTCTTC	2 cut(s)	900, 2784
LmnI	GCTCC	5 cut(s)	562, 785, 2209, 2474, 2573
Lsp1109I	GCAGC	6 cut(s)	661, 922, 1057, 1085, 1287, 2588
LweI	GCATC	4 cut(s)	79, 115, 174, 2577
MaeI	CTAG	4 cut(s)	837, 2502, 2648, 2675
MaeII	ACGT	1 cut(s)	1308
MaeIII	GTNAC	9 cut(s)	3, 23, 295, 334, 866, 1253, 1304, 2362, 2420
MalI	GATC	9 cut(s)	231, 457, 631, 863, 1042, 1655, 1790, 2321, 2557
MbiI	CCGCTC	1 cut(s)	2477
MboI	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
MfeI	CAATTG	2 cut(s)	315, 1189
MflI	RGATCY	3 cut(s)	455, 861, 2555
MhlI	GDGCHC	7 cut(s)	567, 782, 1016, 1299, 2121, 2214, 2526
MlsI	TGGCCA	1 cut(s)	1877
MluNI	TGGCCA	1 cut(s)	1877
MlyI	GAGTC	3 cut(s)	192, 1154, 1760
MmeI	TCCRAC	2 cut(s)	1476, 2154
Mox20I	TGGCCA	1 cut(s)	1877
MroI	TCCGGA	1 cut(s)	1032
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	2 cut(s)	655, 1200
MscI	TGGCCA	1 cut(s)	1877
MseI	TTAA	5 cut(s)	131, 465, 924, 1155, 1754
MslI	CAYNNNNRTG	8 cut(s)	118, 839, 1139, 1386, 1871, 1877, 2261, 2519
Msp20I	TGGCCA	1 cut(s)	1877
MspA1I	CMGCKG	3 cut(s)	2198, 2232, 2492
MspI	CCGG	7 cut(s)	93, 1033, 1121, 1421, 1716, 2123, 2132
MspR9I	CCNGG	4 cut(s)	1421, 2123, 2132, 2607
MunI	CAATTG	2 cut(s)	315, 1189
Mva1269I	GAATGC	1 cut(s)	2704
MvaI	CCWGG	1 cut(s)	2607
MvnI	CGCG	2 cut(s)	1705, 2198
MwoI	GCNNNNNNNGC	8 cut(s)	424, 433, 437, 706, 764, 1700, 2238, 2498
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	3 cut(s)	1421, 2123, 2132
NcoI	CCATGG	1 cut(s)	1872
NdeI	CATATG	1 cut(s)	932
NdeII	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
NgoMIV	GCCGGC	1 cut(s)	92
NlaIV	GGNNCC	4 cut(s)	610, 2130, 2221, 2632
NmuCI	GTSAC	6 cut(s)	3, 23, 334, 1253, 2362, 2420
NspI	RCATGY	3 cut(s)	123, 1107, 2046
PaqCI	CACCTGC	1 cut(s)	2648
PciI	ACATGT	1 cut(s)	1103
PciSI	GCTCTTC	2 cut(s)	900, 2784
PcsI	WCGNNNNNNNCGW	1 cut(s)	2088
PctI	GAATGC	1 cut(s)	2704
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	655, 1200
PfeI	GAWTC	4 cut(s)	391, 469, 1336, 2779
PflMI	CCANNNNNTGG	1 cut(s)	1842
Ple19I	CGATCG	1 cut(s)	1791
PleI	GAGTC	3 cut(s)	191, 1153, 1760
PpsI	GAGTC	3 cut(s)	191, 1153, 1760
PscI	ACATGT	1 cut(s)	1103
Psp124BI	GAGCTC	2 cut(s)	567, 2214
Psp6I	CCWGG	1 cut(s)	2605
PspFI	CCCAGC	2 cut(s)	767, 2287
PspGI	CCWGG	1 cut(s)	2605
PspN4I	GGNNCC	4 cut(s)	610, 2130, 2221, 2632
PspPI	GGNCC	6 cut(s)	608, 707, 801, 2128, 2219, 2631
PsrI	GAACNNNNNNTAC	2 cut(s)	1081, 1113
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	1333
PsuI	RGATCY	3 cut(s)	455, 861, 2555
PvuI	CGATCG	1 cut(s)	1791
RsaI	GTAC	7 cut(s)	213, 495, 1271, 2102, 2537, 2611, 2736
RsaNI	GTAC	7 cut(s)	212, 494, 1270, 2101, 2536, 2610, 2735
RseI	CAYNNNNRTG	8 cut(s)	118, 839, 1139, 1386, 1871, 1877, 2261, 2519
SacI	GAGCTC	2 cut(s)	567, 2214
SacII	CCGCGG	1 cut(s)	2199
SapI	GCTCTTC	2 cut(s)	900, 2784
SaqAI	TTAA	5 cut(s)	131, 465, 924, 1155, 1754
Sau3AI	GATC	9 cut(s)	229, 455, 629, 861, 1040, 1653, 1788, 2319, 2555
Sau96I	GGNCC	6 cut(s)	608, 707, 801, 2128, 2219, 2631
ScaI	AGTACT	1 cut(s)	2537
SchI	GAGTC	3 cut(s)	192, 1154, 1760
ScrFI	CCNGG	4 cut(s)	1421, 2123, 2132, 2607
SduI	GDGCHC	7 cut(s)	567, 782, 1016, 1299, 2121, 2214, 2526
SfaNI	GCATC	4 cut(s)	79, 115, 174, 2577
SfcI	CTRYAG	4 cut(s)	574, 1071, 2227, 2406
Sfr303I	CCGCGG	1 cut(s)	2199
SgrBI	CCGCGG	1 cut(s)	2199
SinI	GGWCC	1 cut(s)	2631
SmiMI	CAYNNNNRTG	8 cut(s)	118, 839, 1139, 1386, 1871, 1877, 2261, 2519
SmlI	CTYRAG	4 cut(s)	344, 695, 1460, 1988
SmoI	CTYRAG	4 cut(s)	344, 695, 1460, 1988
SspI	AATATT	1 cut(s)	1577
SspMI	CTAG	4 cut(s)	837, 2502, 2648, 2675
SstI	GAGCTC	2 cut(s)	567, 2214
StyD4I	CCNGG	4 cut(s)	1419, 2121, 2130, 2605
StyI	CCWWGG	6 cut(s)	1077, 1345, 1841, 1872, 2274, 2460
TaaI	ACNGT	8 cut(s)	23, 301, 1225, 1294, 2521, 2725, 2751, 2774
TaiI	ACGT	1 cut(s)	1311
TaqI	TCGA	8 cut(s)	567, 680, 1629, 1787, 1822, 2082, 2115, 2160
TaqII	GACCGA	2 cut(s)	42, 845
TatI	WGTACW	3 cut(s)	1269, 2535, 2734
TauI	GCSGC	4 cut(s)	1679, 2198, 2201, 2235
TfiI	GAWTC	4 cut(s)	391, 469, 1336, 2779
Tru1I	TTAA	5 cut(s)	131, 465, 924, 1155, 1754
Tru9I	TTAA	5 cut(s)	131, 465, 924, 1155, 1754
TscAI	CASTG	3 cut(s)	534, 1338, 2524
TseFI	GTSAC	6 cut(s)	3, 23, 334, 1253, 2362, 2420
TseI	GCWGC	6 cut(s)	674, 910, 1070, 1073, 1275, 2576
Tsp45I	GTSAC	6 cut(s)	3, 23, 334, 1253, 2362, 2420
TspDTI	ATGAA	8 cut(s)	648, 915, 969, 1129, 1404, 1508, 1559, 1581
TspGWI	ACGGA	5 cut(s)	772, 1159, 2195, 2623, 2744
TspRI	CASTG	3 cut(s)	534, 1338, 2524
Van91I	CCANNNNNTGG	1 cut(s)	1842
VpaK11BI	GGWCC	1 cut(s)	2631
XapI	RAATTY	4 cut(s)	248, 569, 851, 1392
XbaI	TCTAGA	1 cut(s)	2647
XceI	RCATGY	3 cut(s)	123, 1107, 2046
XmnI	GAANNNNTTC	2 cut(s)	655, 1200
XspI	CTAG	4 cut(s)	837, 2502, 2648, 2675
ZrmI	AGTACT	1 cut(s)	2537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.