Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

25449190 .. 25449668

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACGCAAAGGTGAAGAAGCTGGGGGCATTTGGGAAGTTGAAGAAGGAGAAGATCAGAGATGGGTTTGAGGAGAGAGTGGTACAAGTGAGGAGGGTGACTAAGGTTGTGAAAGGAGGGAAGGAGTCGCATTTTAGGGCTATAGTGGTGGTGGGTGACAAGCAAGGCAATGTGGGTGTTGGTGTGGGAAAGGCCAAGGAGGTCATTGGAGCGGTGCAGAAGTCTGCTGTGAATGCTAGGAGGAACATCATCACTGTGCCCATGACTAAGTACTTGACCTTTCCACACAGCTTGGAGACTGAGGCGAATTGGCTGAGCTGCCGTGGAAGATGCATTTACATCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

10.26

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	23 - 87	1.5e-23	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	1 cut(s)	212
AfaI	GTAC	2 cut(s)	84, 272
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	3 cut(s)	22, 291, 318
AluI	AGCT	3 cut(s)	22, 291, 318
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	25, 109, 167
BaeGI	GKGCMC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	319
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	320
BmcAI	AGTACT	1 cut(s)	272
BmsI	GCATC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	195, 322
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	195, 322
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	291, 305
BseRI	GAGGAG	2 cut(s)	86, 106
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	54
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	292, 306
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	195, 322
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	102, 267, 300, 314
BstDSI	CCRYGG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	252
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	83, 271
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	6 cut(s)	22, 140, 194, 291, 313, 318
CviKI_1	RGCY	6 cut(s)	22, 140, 194, 291, 313, 318
CviQI	GTAC	2 cut(s)	83, 271
DdeI	CTNAG	4 cut(s)	102, 267, 300, 314
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	265
FaiI	YATR	2 cut(s)	143, 263
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	319
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	194
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	265
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	3 cut(s)	25, 109, 167
Hpy188I	TCNGA	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	40, 115
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	217, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	102, 267, 300, 314
Hsp92II	CATG	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	1 cut(s)	8
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	97, 155
MalI	GATC	1 cut(s)	56
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	54
MboII	GAAGA	4 cut(s)	28, 55, 64, 339
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	64, 84, 87, 110, 193, 234, 295
Mph1103I	ATGCAT	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	97, 155
NsiI	ATGCAT	1 cut(s)	335
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	22
RsaI	GTAC	2 cut(s)	84, 272
RsaNI	GTAC	2 cut(s)	83, 271
RseI	CAYNNNNRTG	1 cut(s)	254
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	7 cut(s)	15, 24, 108, 204, 281, 293, 320
SfaNI	GCATC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	256
TasI	AATT	1 cut(s)	307
TatI	WGTACW	1 cut(s)	270
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	97, 155
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	2 cut(s)	97, 155
TspRI	CASTG	1 cut(s)	259
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.