Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Forward (+)

26316264 .. 26318576

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCCATTTCCACAACCTCGTCCTCTCTCTCCACTCTCTCTTCCCTCTCTCTCCACCCCTCTCCCCGCCTCTCCCTCCTCCCATTCACCGCCGCAGCCACCCCCGCAACCAAACCCAGGAAACCCATTTCCCTCTTCCTCTCCTCTTCCCGACCCACCACCGTTATCTTCAATGCCGCCGCTTCCGACGTCGAGACCTCCTTCTTTGACAACAAGGACCCCGAATTCGACGGCGTGTTCGAGCCCCCGGAGGCCCCCGAAGACTTCGTCCCCCCGCCTTCCTTCGATGAGGATTCGACCGAGACCGAGGACGACATCGCCGCCGCGTACGAGGAGCTGTACGGCCCGGCGTACAGCGGCGTGACCATGCTGGGGAACGACATTTACGTGATGGACTCGAAGGTGAAAAAGCTTGGGGCTTTTGGGAAGCTGAAGAAGGAGAAGATTAGAGATGGGTTCGAGGAGAGGGTGGTGCAGGTGAGGAGGGTGACGAAGGTGGTGAAAGGAGGGAAGCAGCTGCATTTTCGGGCGATTGTGGTGGTTGGCGACAAGCAGGGCAATGTGGGTGTTGGCGTCGGGAAGGCCAAGGAGGTTATCGGGGCGGTGCAGAAGTCTGCGGTGAATGCTAGAAGGAACATTATCAGTGTGCCCATGACCAAGTACCTGACTTTTCCTCACAGATCCGAGGGAGATTATGGAGCAGCAAAGGTGATGCTTAGGCCTGCTTCGCCTGGTACTGGAGTCATTGCCGGAGGGTCAGTGAGAATAGTTCTCGAGATGGCAGGTGTCGAAAATGCTCTTGGGAAGCAACTTGGAAGTAAGAATGCTCTCAACAATGCTAGAGCCACTGTGGTTGCAGTACAGAAAATGAGGCAGTTCCGTGATGTCGCTCGTGAGCGTGGTATCCCGATGGAAGAGCTTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

310

Amino Acids

33.31

Weight (kDa)

9.32

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	466, 773
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	2 cut(s)	466, 773
AccII	CGCG	1 cut(s)	326
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	2 cut(s)	189, 573
AfaI	GTAC	6 cut(s)	329, 341, 353, 662, 736, 861
AfiI	CCNNNNNNNGG	3 cut(s)	117, 372, 737
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	116, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AluBI	AGCT	5 cut(s)	337, 412, 430, 517, 919
AluI	AGCT	5 cut(s)	337, 412, 430, 517, 919
Alw26I	GTCTC	2 cut(s)	188, 296
AlwI	GGATC	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	5 cut(s)	3, 252, 343, 582, 719
ApeKI	GCWGC	4 cut(s)	95, 514, 517, 701
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	6 cut(s)	209, 221, 241, 252, 253, 284
AspS9I	GGNCC	3 cut(s)	217, 253, 344
AsuC2I	CCSGG	2 cut(s)	248, 347
AsuHPI	GGTGA	7 cut(s)	79, 415, 490, 499, 511, 631, 721
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	651
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	107, 504, 526, 713
BccI	CCATC	4 cut(s)	385, 446, 772, 904
BceAI	ACGGC	2 cut(s)	247, 358
BciT130I	CCWGG	2 cut(s)	118, 732
BciVI	GTATCC	1 cut(s)	914
BcnI	CCSGG	2 cut(s)	248, 347
BcoDI	GTCTC	2 cut(s)	188, 296
BfaI	CTAG	2 cut(s)	627, 840
BfuAI	ACCTGC	2 cut(s)	466, 773
BfuI	GTATCC	1 cut(s)	914
Bme1390I	CCNGG	4 cut(s)	118, 248, 347, 732
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	3 cut(s)	217, 253, 344
BmiI	GGNNCC	2 cut(s)	219, 255
BmrFI	CCNGG	4 cut(s)	118, 248, 347, 732
BmsI	GCATC	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	716
BpuMI	CCSGG	2 cut(s)	248, 347
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	2 cut(s)	189, 573
BsaI	GGTCTC	2 cut(s)	188, 296
BsaJI	CCNNGG	5 cut(s)	116, 246, 306, 585, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 372, 737
Bse1I	ACTGG	1 cut(s)	742
Bse3DI	GCAATG	2 cut(s)	565, 744
BseBI	CCWGG	2 cut(s)	118, 732
BseDI	CCNNGG	5 cut(s)	116, 246, 306, 585, 684
BseLI	CCNNNNNNNGG	3 cut(s)	117, 372, 737
BseMI	GCAATG	2 cut(s)	565, 744
BseNI	ACTGG	1 cut(s)	742
BseRI	GAGGAG	5 cut(s)	68, 133, 347, 476, 496
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	107, 504, 526, 713
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	2 cut(s)	494, 626
Bsh1236I	CGCG	1 cut(s)	326
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	5 cut(s)	5, 254, 345, 584, 721
BsiEI	CGRYCG	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	3 cut(s)	248, 347, 750
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	117, 372, 737
BsmAI	GTCTC	2 cut(s)	188, 296
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	2 cut(s)	628, 829
BsnI	GGCC	5 cut(s)	5, 254, 345, 584, 721
Bso31I	GGTCTC	2 cut(s)	188, 296
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	2 cut(s)	246, 651
Bsp143I	GATC	1 cut(s)	680
BspANI	GGCC	5 cut(s)	5, 254, 345, 584, 721
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	219, 255
BspMI	ACCTGC	2 cut(s)	466, 773
BspPI	GGATC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	909
BspTNI	GGTCTC	2 cut(s)	188, 296
BsrDI	GCAATG	2 cut(s)	565, 744
BsrI	ACTGG	1 cut(s)	742
BssECI	CCNNGG	5 cut(s)	116, 246, 306, 585, 684
BssMI	GATC	1 cut(s)	680
BssNI	GRCGYC	2 cut(s)	189, 573
BssSI	CACGAG	1 cut(s)	891
BssT1I	CCWWGG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	2 cut(s)	118, 732
Bst4CI	ACNGT	2 cut(s)	163, 850
Bst6I	CTCTTC	4 cut(s)	46, 140, 151, 909
BstACI	GRCGYC	2 cut(s)	189, 573
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	683
BstMAI	GTCTC	2 cut(s)	188, 296
BstMBI	GATC	1 cut(s)	680
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 623, 727
BstNI	CCWGG	2 cut(s)	118, 732
BstSCI	CCNGG	4 cut(s)	116, 246, 345, 730
BstSLI	GKGCMC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	4 cut(s)	107, 504, 526, 713
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	5 cut(s)	5, 254, 345, 584, 721
BtgZI	GCGATG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	649, 765, 846
BveI	ACCTGC	2 cut(s)	466, 773
Cac8I	GCNNGC	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	217, 253, 344
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	6 cut(s)	328, 340, 352, 661, 735, 860
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	2 cut(s)	367, 652
CviQI	GTAC	6 cut(s)	328, 340, 352, 661, 735, 860
DdeI	CTNAG	1 cut(s)	716
DpnI	GATC	1 cut(s)	682
DpnII	GATC	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	46, 140, 151, 909
EarI	CTCTTC	4 cut(s)	46, 140, 151, 909
Eco130I	CCWWGG	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	721
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	2 cut(s)	188, 296
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	773
EcoO109I	RGGNCCY	2 cut(s)	217, 253
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	116, 730
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	2 cut(s)	370, 655
FaiI	YATR	3 cut(s)	368, 653, 696
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	366, 651
FauI	CCCGC	3 cut(s)	74, 112, 282
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	627, 840
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	5 cut(s)	5, 254, 345, 584, 721
HapII	CCGG	3 cut(s)	248, 347, 750
HgaI	GACGC	1 cut(s)	562
Hin1I	GRCGYC	2 cut(s)	189, 573
Hin1II	CATG	2 cut(s)	370, 655
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	293, 395, 741
HpaII	CCGG	3 cut(s)	248, 347, 750
HphI	GGTGA	7 cut(s)	79, 415, 490, 499, 511, 631, 721
Hpy188I	TCNGA	2 cut(s)	187, 685
Hpy188III	TCNNGA	7 cut(s)	150, 193, 577, 773, 775, 893, 907
Hpy99I	CGWCG	4 cut(s)	191, 194, 233, 578
HpyAV	CCTTC	8 cut(s)	211, 288, 292, 394, 430, 487, 574, 624
HpyCH4III	ACNGT	2 cut(s)	163, 850
HpyCH4IV	ACGT	2 cut(s)	189, 387
HpyCH4V	TGCA	4 cut(s)	475, 520, 607, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 623, 727
HpyF3I	CTNAG	1 cut(s)	716
HpySE526I	ACGT	2 cut(s)	189, 387
Hsp92I	GRCGYC	2 cut(s)	189, 573
Hsp92II	CATG	2 cut(s)	370, 655
Kzo9I	GATC	1 cut(s)	680
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	2 cut(s)	334, 698
Lsp1109I	GCAGC	4 cut(s)	107, 504, 526, 713
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	2 cut(s)	627, 840
MaeII	ACGT	2 cut(s)	189, 387
MaeIII	GTNAC	2 cut(s)	361, 487
MalI	GATC	1 cut(s)	682
MboI	GATC	1 cut(s)	680
MboII	GAAGA	8 cut(s)	33, 127, 138, 160, 272, 445, 454, 926
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	2 cut(s)	246, 651
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	389, 750
MmeI	TCCRAC	1 cut(s)	210
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	357, 517
MspI	CCGG	3 cut(s)	248, 347, 750
MspR9I	CCNGG	4 cut(s)	118, 248, 347, 732
Mva1269I	GAATGC	2 cut(s)	628, 829
MvaI	CCWGG	2 cut(s)	118, 732
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	104, 623, 727
NciI	CCSGG	2 cut(s)	248, 347
NdeII	GATC	1 cut(s)	680
NlaIII	CATG	2 cut(s)	370, 655
NlaIV	GGNNCC	2 cut(s)	219, 255
NmuCI	GTSAC	2 cut(s)	361, 487
PaeR7I	CTCGAG	1 cut(s)	773
PaqCI	CACCTGC	2 cut(s)	466, 773
PceI	AGGCCT	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 384
PctI	GAATGC	2 cut(s)	628, 829
PfeI	GAWTC	1 cut(s)	293
Pfl23II	CGTACG	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	266
PleI	GAGTC	2 cut(s)	389, 749
PpsI	GAGTC	2 cut(s)	389, 749
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	116, 730
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	116, 730
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	219, 255
PspPI	GGNCC	3 cut(s)	217, 253, 344
PspPPI	RGGWCCY	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PsuI	RGATCY	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	6 cut(s)	329, 341, 353, 662, 736, 861
RsaNI	GTAC	6 cut(s)	328, 340, 352, 661, 735, 860
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	909
Sau3AI	GATC	1 cut(s)	680
Sau96I	GGNCC	3 cut(s)	217, 253, 344
SchI	GAGTC	2 cut(s)	389, 750
ScrFI	CCNGG	4 cut(s)	118, 248, 347, 732
SduI	GDGCHC	2 cut(s)	246, 651
SfaNI	GCATC	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	773
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	1 cut(s)	224
SseBI	AGGCCT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	627, 840
StuI	AGGCCT	1 cut(s)	721
StyD4I	CCNGG	4 cut(s)	116, 246, 345, 730
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	163, 850
TaiI	ACGT	2 cut(s)	192, 390
TaqI	TCGA	9 cut(s)	192, 228, 240, 285, 296, 398, 459, 774, 789
TaqII	GACCGA	2 cut(s)	314, 320
TasI	AATT	1 cut(s)	224
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	6 cut(s)	95, 179, 182, 323, 326, 360
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	3 cut(s)	649, 765, 853
TseFI	GTSAC	2 cut(s)	361, 487
TseI	GCWGC	4 cut(s)	95, 514, 517, 701
Tsp45I	GTSAC	2 cut(s)	361, 487
TspGWI	ACGGA	1 cut(s)	869
TspRI	CASTG	3 cut(s)	649, 765, 853
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	773
XspI	CTAG	2 cut(s)	627, 840
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.