Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

6575540 .. 6576362

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCATGACCACAGCCTCCTCAACTCTCTCTTCCTTCTCCTCCCTCTCCCTCCACACCTCTCCACGCCTCTCTCTCCTCCCTTTCACCGCCTCGAACACTTCCCTGACCAAACTCAAGTCTCCCATTTCTCTCTTCCTCTCTTCCTCTCGACGCCTTACCACCACTACATGCAATGCCGAACAACCCGAGATAGAGACCACCTTCTTCGACAACGACGACCCTGAGTACGAGGCTGTCTTCGAGCCCCCGGAGGCCCCGGAAGGCTTCGTCCCGCCGCCCTCCTTCGACGAGGGGTCGTTGGAGACGGAGGACGAAGTAGCCGCGGCCTACGAGGAGCTCTACGGCCCAGCCTACAGCGGCATGAGCGTTCTCGGGAACGATATCTATGTGATGGACGCCAAGGTGAAGAAGCTGGGCGCTTTTGGGAAGTTGAAGAAGGAGAAGATCAGAGATGGCTTTGAGGAGAGAGTGGTCCAGGTGAGGAGGGTGACTAAGGTTGTGAAAGGAGGGAAGCAGTTGCATTTTAGGGCTGTAGTGGTGGTGGGTGACAAGCAAGGCAATGTGGGTGTTGGTGTGGGAAAGGCCAAGGAGGTCATTGGAGCTGTTCAAAAGTCTGCTGTCAATGCTAGGAGGAACATCATCACTGTGCCCATGACTAAGTACTTGACCTTTCCTCACAGTTGTGTAGGTCTGGTTCTTGGTGGTGATGCAAATAATGCATTGTATGGATTTCATTATGGATTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

251

Amino Acids

27.03

Weight (kDa)

6.45

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	154 - 218	7.6e-23	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	326
AciI	CCGC	6 cut(s)	90, 275, 278, 324, 326, 360
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	154, 399
AfaI	GTAC	2 cut(s)	230, 665
AgsI	TTSAA	2 cut(s)	436, 611
AhdI	GACNNNNNGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	477
AleI	CACNNNNGTG	1 cut(s)	684
AluBI	AGCT	3 cut(s)	340, 415, 605
AluI	AGCT	3 cut(s)	340, 415, 605
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	3 cut(s)	126, 191, 299
Ama87I	CYCGRG	2 cut(s)	188, 374
AoxI	GGCC	5 cut(s)	3, 255, 327, 346, 585
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	256, 347, 475
AsuC2I	CCSGG	2 cut(s)	251, 260
AsuHPI	GGTGA	6 cut(s)	79, 418, 493, 502, 560, 719
AvaI	CYCGRG	2 cut(s)	188, 374
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	249, 342
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	342
BccI	CCATC	2 cut(s)	388, 449
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	479
BcnI	CCSGG	2 cut(s)	251, 260
BcoDI	GTCTC	3 cut(s)	126, 191, 299
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	355, 534
BfoI	RGCGCY	1 cut(s)	423
BisI	GCNGC	4 cut(s)	278, 324, 327, 361
BlsI	GCNGC	4 cut(s)	279, 325, 328, 362
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	3 cut(s)	251, 260, 479
Bme18I	GGWCC	1 cut(s)	475
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmeT110I	CYCGRG	2 cut(s)	188, 374
BmgT120I	GGNCC	3 cut(s)	256, 347, 475
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	3 cut(s)	251, 260, 479
BmsI	GCATC	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	251, 260
BsaHI	GRCGYC	2 cut(s)	154, 399
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	5 cut(s)	249, 258, 324, 402, 588
Bse3DI	GCAATG	2 cut(s)	181, 568
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	5 cut(s)	249, 258, 324, 402, 588
BseMI	GCAATG	2 cut(s)	181, 568
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	6 cut(s)	10, 31, 68, 350, 479, 499
BseSI	GKGCMC	1 cut(s)	654
BseYI	CCCAGC	2 cut(s)	349, 415
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	5 cut(s)	5, 257, 329, 348, 587
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	2 cut(s)	188, 374
BsiSI	CCGG	2 cut(s)	251, 260
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	3 cut(s)	126, 191, 299
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	5 cut(s)	5, 257, 329, 348, 587
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	2 cut(s)	188, 374
Bsp1286I	GDGCHC	3 cut(s)	249, 342, 654
Bsp143I	GATC	1 cut(s)	447
BspACI	CCGC	6 cut(s)	90, 275, 278, 324, 326, 360
BspANI	GGCC	5 cut(s)	5, 257, 329, 348, 587
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	181, 568
BssECI	CCNNGG	5 cut(s)	249, 258, 324, 402, 588
BssMI	GATC	1 cut(s)	447
BssNI	GRCGYC	2 cut(s)	154, 399
BssT1I	CCWWGG	2 cut(s)	402, 588
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	649, 683
Bst6I	CTCTTC	3 cut(s)	37, 140, 148
BstACI	GRCGYC	2 cut(s)	154, 399
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstDEI	CTNAG	3 cut(s)	225, 495, 660
BstDSI	CCRYGG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	1 cut(s)	450
BstMAI	GTCTC	3 cut(s)	126, 191, 299
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 626, 719
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	3 cut(s)	249, 258, 477
BstSFI	CTRYAG	2 cut(s)	355, 534
BstSLI	GKGCMC	1 cut(s)	654
BstUI	CGCG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	232
BsuRI	GGCC	5 cut(s)	5, 257, 329, 348, 587
BtgI	CCRYGG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	645
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	256, 347, 475
Cfr42I	CCGCGG	1 cut(s)	327
CseI	GACGC	2 cut(s)	162, 407
Csp6I	GTAC	2 cut(s)	229, 664
CviAII	CATG	4 cut(s)	7, 171, 364, 655
CviQI	GTAC	2 cut(s)	229, 664
DdeI	CTNAG	3 cut(s)	225, 495, 660
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	37, 140, 148
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	3 cut(s)	37, 140, 148
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	402, 588
Eco24I	GRGCYC	2 cut(s)	249, 342
Eco31I	GGTCTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	340
Eco88I	CYCGRG	2 cut(s)	188, 374
EcoICRI	GAGCTC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	402, 588
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	2 cut(s)	249, 342
ErhI	CCWWGG	2 cut(s)	402, 588
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	4 cut(s)	10, 174, 367, 658
FaiI	YATR	7 cut(s)	8, 172, 365, 390, 656, 729, 741
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	6, 170, 363, 654
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	278, 324, 327, 361
FriOI	GRGCYC	2 cut(s)	249, 342
Fsp4HI	GCNGC	4 cut(s)	278, 324, 327, 361
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	4 cut(s)	278, 324, 327, 361
GsaI	CCCAGC	2 cut(s)	353, 419
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	5 cut(s)	5, 257, 329, 348, 587
HapII	CCGG	2 cut(s)	251, 260
HgaI	GACGC	2 cut(s)	162, 407
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	2 cut(s)	154, 399
Hin1II	CATG	4 cut(s)	10, 174, 367, 658
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HpaII	CCGG	2 cut(s)	251, 260
HphI	GGTGA	6 cut(s)	79, 418, 493, 502, 560, 719
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	150, 376
Hpy99I	CGWCG	3 cut(s)	156, 221, 293
HpyAV	CCTTC	5 cut(s)	46, 214, 257, 295, 433
HpyCH4III	ACNGT	2 cut(s)	649, 683
HpyCH4V	TGCA	4 cut(s)	174, 523, 713, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 626, 719
HpyF3I	CTNAG	3 cut(s)	225, 495, 660
Hsp92I	GRCGYC	2 cut(s)	154, 399
Hsp92II	CATG	4 cut(s)	10, 174, 367, 658
HspAI	GCGC	1 cut(s)	420
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	447
LmnI	GCTCC	2 cut(s)	337, 602
LpnPI	CCDG	9 cut(s)	119, 237, 264, 273, 363, 401, 464, 491, 680
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	490, 548
MalI	GATC	1 cut(s)	449
MboI	GATC	1 cut(s)	447
MboII	GAAGA	8 cut(s)	24, 127, 135, 199, 232, 421, 448, 457
MhlI	GDGCHC	3 cut(s)	249, 342, 654
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	724
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	2 cut(s)	647, 684
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	326, 360
MspI	CCGG	2 cut(s)	251, 260
MspR9I	CCNGG	3 cut(s)	251, 260, 479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	366, 626, 719
NciI	CCSGG	2 cut(s)	251, 260
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	4 cut(s)	10, 174, 367, 658
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	490, 548
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PkrI	GCNGC	4 cut(s)	279, 325, 328, 362
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	2 cut(s)	349, 415
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	256, 347, 475
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
RsaI	GTAC	2 cut(s)	230, 665
RsaNI	GTAC	2 cut(s)	229, 664
RseI	CAYNNNNRTG	2 cut(s)	647, 684
SacI	GAGCTC	1 cut(s)	342
SacII	CCGCGG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	4 cut(s)	278, 324, 327, 361
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	3 cut(s)	256, 347, 475
ScaI	AGTACT	1 cut(s)	665
ScrFI	CCNGG	3 cut(s)	251, 260, 479
SduI	GDGCHC	3 cut(s)	249, 342, 654
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	2 cut(s)	355, 534
Sfr303I	CCGCGG	1 cut(s)	327
SgrBI	CCGCGG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	2 cut(s)	647, 684
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	6 cut(s)	90, 275, 278, 324, 326, 360
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	249, 258, 477
StyI	CCWWGG	2 cut(s)	402, 588
TaaI	ACNGT	2 cut(s)	649, 683
TaqI	TCGA	5 cut(s)	95, 151, 210, 243, 288
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	4 cut(s)	280, 326, 329, 363
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	490, 548
Tsp45I	GTSAC	2 cut(s)	490, 548
TspDTI	ATGAA	1 cut(s)	725
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	475
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	1 cut(s)	630
ZrmI	AGTACT	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.