Rh5CG074600

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002833
Physical Location & Seq
Reverse (-)
5584270 .. 5590976
6707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG074600.1

Sequence Viewer

Length: 1809 bp
ATGCCCAAGCCCACTCTTGGACCCAAACCCAAACCCAGTACCAGCACATGTATATATAGTAGCTTTAGCAACTTGGCCTATTCAGATTTAGCAGCCTCTCTCTCTCTCCCTCTCTCCCCCCCCCCCCCTCCCTCCCCCCTGCGAACGATGTCACCATTTTGCCCTAACTGTGACCGAGAACCTGAGTTTTGGGGTGCTGAATTGAAATCTGGCGAGAAGTTGAAAGTGAAGCCAGATGCCGGCGTGGTTTTGCATCTCACACAGGCATGTGTGGGCTTAAATCAAAGATGTCATGGTGTCGTTTATGTGAGCATCGGGGAAGAGAGAAGAGTCTTGGGAAGTCTCTTGCCACCAAGAGTACCTCAATTTTCCTGCGATCTGGTCTTTGACCAAGAATTTCTGCTTTCACACAACTTGGAGATGGGAAGCGTCTTCTTTGCCGGTTATTCTTGCTTTAGTAAAAATAAGCTTGAGGAAACAAAGCAAACTACAAGTAAGACCAAATCTTCTGATGAGAATCCAATCTTTGAGGAAAAGAGAGAGCCTCTTAGGCAAGCAAGGCCAGCAATAGGGAAGACCAGATCTTCTGTTAAGAATCCAGTCATTGAGGAAAATAGAGTACCTATTGACAAAGCTGACTTTGTTGTGCGCCCACTGGTGGTGAGAAGGCCAGAGAACATAAGTAAGGAGCTCGAATTCTATAGAACTATTTTTGAGGCTGAACCGATTGCTGGCCCCCAGATTGGGTCTGAAAGATCACACGAGTTCAAGATTGGAAATAATTCATTATATGTTGTTGCTGCTTCGACTATTGAGGAACTTGAGCCTCTTGGGCCTGCTCTTTGTGTGGAGACGGGAGATGTAGCAACTTTTATTGAGAAAGCGAAAAATGCTGGGTGGGAGTGCTCCGTCCTTGAAAGGTATCGGCCCAATATCACGCCAGATGATAAGTTGAGTGGCACTAGAATGAGAACTAAATTCGGTCAGATCTGTTACATCTGTCAGACACCCCAAACAAGAAACAATGAAGAAGAGCAGCAAACAAAAATTAAGTCCATATGCCCTACAATGCTATTTTATGAAGATGAGTTTGATGAGGCAGTTGCAAATTATGAGGCTGTTTTCGGAAGGTCTCAGGGCTCGTTCTTTCAGTTGTTCCGGAGACGATCTACCTCTTTTTCAGACTGCCTCTATGCTGCAGCCAAGGATAGGGGTATTGGCAGTTCTACATGTCTCTGCATAGAGCCGGAGGATATTGTCATTTTCATGGAGTCGTTCTTTAATTTGAAGTCATCCGTAGATTTCTTCTATCTCAATTGTGAAGTGGTTCTACATGACTGGGGAAAGACAGTTGTGAGATTGATATCTCCTAAGCGTAGTCACACTCTTTATGTGTACAGCAGCAAGCCATTATTGACTGTGCTCTCATGTAACGTAAAGCATGGTGCTATACAGCCACTGATTCAGTTCCTTGGCTCAGTCAGTCAAGTAAAATGGGTCAAAATCCATGTAGATGAAATTCCTCGTTGCTTGTCCTTCCCTTACCCGGATTTGCTGATTATTGGTGATGAGAAGATACTTACTCTTGAGAGGATGGAAAAAAAATTGTCTTCAAGGAAGTCGGATACCAAGATATTGCAGGTTCATGGGCAACCAGTATCAGAAGACATGAAAAGATTGTTGAACAGGCATGAAGCAAAATATGTAGGTTTGCCTTTGACAATTGAGAATGTTGAACAAATTTATTCAAGTCTTTCTACTCCAAAATCAGACAAGTGGGTCTATCTTCCTCACTTAGAATGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

602

Amino Acids

67.96

Weight (kDa)

7.12

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 63 - 149 4.8e-11 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1778
Acc36I ACCTGC 1 cut(s) 1630
AccIII TCCGGA 1 cut(s) 1158
AcsI RAATTY 5 cut(s) 395, 695, 977, 1518, 1740
AfaI GTAC 4 cut(s) 40, 360, 621, 1397
AfiI CCNNNNNNNGG 9 cut(s) 17, 239, 569, 658, 731, 743, 744, 1209, 1546
AflIII ACRYGT 2 cut(s) 47, 1229
AgsI TTSAA 9 cut(s) 205, 223, 769, 917, 1288, 1614, 1684, 1736, 1749
AluBI AGCT 4 cut(s) 63, 469, 635, 691
AluI AGCT 4 cut(s) 63, 469, 635, 691
Alw21I GWGCWC 3 cut(s) 693, 908, 1425
Alw26I GTCTC 5 cut(s) 347, 845, 1137, 1156, 1238
AlwNI CAGNNNCTG 1 cut(s) 1459
Aor13HI TCCGGA 1 cut(s) 1158
AoxI GGCC 6 cut(s) 75, 560, 668, 733, 833, 926
ApeKI GCWGC 6 cut(s) 92, 800, 1036, 1196, 1199, 1401
ApoI RAATTY 5 cut(s) 395, 695, 977, 1518, 1740
ArsI GACNNNNNNTTYG 2 cut(s) 1037, 1069
Asp700I GAANNNNTTC 2 cut(s) 781, 1326
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 4 cut(s) 20, 734, 833, 927
AsuC2I CCSGG 1 cut(s) 1547
AsuHPI GGTGA 3 cut(s) 144, 673, 1577
AvaII GGWCC 1 cut(s) 20
BanII GRGCYC 2 cut(s) 693, 1142
BarI GAAGNNNNNNTAC 2 cut(s) 1314, 1346
BauI CACGAG 1 cut(s) 761
BbsI GAAGAC 4 cut(s) 424, 581, 1602, 1671
Bbv12I GWGCWC 3 cut(s) 693, 908, 1425
BbvI GCAGC 6 cut(s) 104, 787, 1048, 1183, 1211, 1413
BccI CCATC 2 cut(s) 415, 1588
BciVI GTATCC 1 cut(s) 1618
BcnI CCSGG 1 cut(s) 1547
BcoDI GTCTC 5 cut(s) 347, 845, 1137, 1156, 1238
BfaI CTAG 1 cut(s) 963
BfmI CTRYAG 2 cut(s) 700, 1197
BfuAI ACCTGC 1 cut(s) 1630
BfuI GTATCC 1 cut(s) 1618
BglI GCCNNNNNGGC 2 cut(s) 550, 832
BglII AGATCT 2 cut(s) 581, 987
BisI GCNGC 6 cut(s) 93, 801, 1037, 1197, 1200, 1402
BlsI GCNGC 6 cut(s) 94, 802, 1038, 1198, 1201, 1403
Bme1390I CCNGG 1 cut(s) 1547
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 4 cut(s) 20, 734, 833, 927
BmiI GGNNCC 2 cut(s) 22, 736
BmrFI CCNGG 1 cut(s) 1547
BmrI ACTGGG 2 cut(s) 30, 1348
BmsI GCATC 3 cut(s) 226, 262, 321
BmuI ACTGGG 2 cut(s) 30, 1348
BpiI GAAGAC 4 cut(s) 424, 581, 1602, 1671
BplI GAGNNNNNCTC 2 cut(s) 529, 561
Bpu10I CCTNAGC 1 cut(s) 1371
BpuEI CTTGAG 3 cut(s) 491, 842, 1607
BpuMI CCSGG 1 cut(s) 1547
BsaBI GATNNNNATC 2 cut(s) 516, 1363
BsaI GGTCTC 1 cut(s) 1137
BsaJI CCNNGG 2 cut(s) 1203, 1471
BsaWI WCCGGW 1 cut(s) 1158
Bsc4I CCNNNNNNNGG 9 cut(s) 17, 239, 569, 658, 731, 743, 744, 1209, 1546
Bse118I RCCGGY 2 cut(s) 239, 440
Bse1I ACTGG 5 cut(s) 36, 599, 660, 1343, 1655
Bse8I GATNNNNATC 2 cut(s) 516, 1363
BseAI TCCGGA 1 cut(s) 1158
BseDI CCNNGG 2 cut(s) 1203, 1471
BseGI GGATG 2 cut(s) 1292, 1599
BseJI GATNNNNATC 2 cut(s) 516, 1363
BseLI CCNNNNNNNGG 9 cut(s) 17, 239, 569, 658, 731, 743, 744, 1209, 1546
BseMII CTCAG 3 cut(s) 174, 1148, 1491
BseNI ACTGG 5 cut(s) 36, 599, 660, 1343, 1655
BseXI GCAGC 6 cut(s) 104, 787, 1048, 1183, 1211, 1413
BseYI CCCAGC 1 cut(s) 893
BshFI GGCC 6 cut(s) 77, 562, 670, 735, 835, 928
BsiHKAI GWGCWC 3 cut(s) 693, 908, 1425
BsiSI CCGG 5 cut(s) 240, 441, 1159, 1247, 1547
BslI CCNNNNNNNGG 9 cut(s) 17, 239, 569, 658, 731, 743, 744, 1209, 1546
BsmAI GTCTC 5 cut(s) 347, 845, 1137, 1156, 1238
BsmBI CGTCTC 2 cut(s) 845, 1156
BsnI GGCC 6 cut(s) 77, 562, 670, 735, 835, 928
Bso31I GGTCTC 1 cut(s) 1137
Bsp1286I GDGCHC 4 cut(s) 693, 908, 1142, 1425
Bsp13I TCCGGA 1 cut(s) 1158
Bsp1407I TGTACA 1 cut(s) 1395
Bsp143I GATC 5 cut(s) 376, 581, 755, 987, 1166
BspANI GGCC 6 cut(s) 77, 562, 670, 735, 835, 928
BspCNI CTCAG 3 cut(s) 175, 1147, 1490
BspEI TCCGGA 1 cut(s) 1158
BspLI GGNNCC 2 cut(s) 22, 736
BspMAI CTGCAG 1 cut(s) 1201
BspMI ACCTGC 1 cut(s) 1630
BspQI GCTCTTC 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 1137
BsrFI RCCGGY 2 cut(s) 239, 440
BsrGI TGTACA 1 cut(s) 1395
BsrI ACTGG 5 cut(s) 36, 599, 660, 1343, 1655
BssAI RCCGGY 2 cut(s) 239, 440
BssECI CCNNGG 2 cut(s) 1203, 1471
BssMI GATC 5 cut(s) 376, 581, 755, 987, 1166
BssSI CACGAG 1 cut(s) 761
BssT1I CCWWGG 2 cut(s) 1203, 1471
Bst2BI CACGAG 1 cut(s) 761
Bst4CI ACNGT 3 cut(s) 170, 1351, 1420
Bst6I CTCTTC 3 cut(s) 315, 322, 1026
BstAUI TGTACA 1 cut(s) 1395
BstC8I GCNNGC 6 cut(s) 241, 555, 564, 733, 837, 1406
BstDEI CTNAG 6 cut(s) 183, 548, 1134, 1371, 1477, 1795
BstF5I GGATG 2 cut(s) 1292, 1599
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 5 cut(s) 379, 584, 758, 990, 1169
BstMAI GTCTC 5 cut(s) 347, 845, 1137, 1156, 1238
BstMBI GATC 5 cut(s) 376, 581, 755, 987, 1166
BstMWI GCNNNNNNNGC 5 cut(s) 550, 559, 563, 832, 890
BstNSI RCATGY 3 cut(s) 51, 270, 1233
BstSCI CCNGG 1 cut(s) 1545
BstSFI CTRYAG 2 cut(s) 700, 1197
BstV1I GCAGC 6 cut(s) 104, 787, 1048, 1183, 1211, 1413
BstV2I GAAGAC 4 cut(s) 424, 581, 1602, 1671
BstX2I RGATCY 2 cut(s) 581, 987
BstYI RGATCY 2 cut(s) 581, 987
BsuI GTATCC 1 cut(s) 1618
BsuRI GGCC 6 cut(s) 77, 562, 670, 735, 835, 928
BtsCI GGATG 2 cut(s) 1292, 1599
BtsIMutI CAGTG 2 cut(s) 653, 1457
BveI ACCTGC 1 cut(s) 1630
Cac8I GCNNGC 6 cut(s) 241, 555, 564, 733, 837, 1406
CaiI CAGNNNCTG 1 cut(s) 1459
CfoI GCGC 1 cut(s) 651
Cfr10I RCCGGY 2 cut(s) 239, 440
Cfr13I GGNCC 4 cut(s) 20, 734, 833, 927
CseI GACGC 1 cut(s) 418
Csp6I GTAC 4 cut(s) 39, 359, 620, 1396
CviQI GTAC 4 cut(s) 39, 359, 620, 1396
DdeI CTNAG 6 cut(s) 183, 548, 1134, 1371, 1477, 1795
DpnI GATC 5 cut(s) 378, 583, 757, 989, 1168
DpnII GATC 5 cut(s) 376, 581, 755, 987, 1166
DrdI GACNNNNNNGTC 1 cut(s) 1778
DseDI GACNNNNNNGTC 1 cut(s) 1778
Eam1104I CTCTTC 3 cut(s) 315, 322, 1026
EarI CTCTTC 3 cut(s) 315, 322, 1026
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 2 cut(s) 1203, 1471
Eco24I GRGCYC 2 cut(s) 693, 1142
Eco31I GGTCTC 1 cut(s) 1137
Eco32I GATATC 1 cut(s) 1365
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 691
EcoRI GAATTC 1 cut(s) 695
EcoRV GATATC 1 cut(s) 1365
EcoT14I CCWWGG 2 cut(s) 1203, 1471
EcoT38I GRGCYC 2 cut(s) 693, 1142
ErhI CCWWGG 2 cut(s) 1203, 1471
Esp3I CGTCTC 2 cut(s) 845, 1156
FauNDI CATATG 1 cut(s) 1058
Fnu4HI GCNGC 6 cut(s) 93, 801, 1037, 1197, 1200, 1402
FokI GGATG 2 cut(s) 1279, 1606
FriOI GRGCYC 2 cut(s) 693, 1142
Fsp4HI GCNGC 6 cut(s) 93, 801, 1037, 1197, 1200, 1402
FspBI CTAG 1 cut(s) 963
GlaI GCGC 1 cut(s) 650
GluI GCNGC 6 cut(s) 93, 801, 1037, 1197, 1200, 1402
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 6 cut(s) 77, 562, 670, 735, 835, 928
HapII CCGG 5 cut(s) 240, 441, 1159, 1247, 1547
HgaI GACGC 1 cut(s) 418
HhaI GCGC 1 cut(s) 651
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 5 cut(s) 330, 517, 595, 1271, 1462
HpaII CCGG 5 cut(s) 240, 441, 1159, 1247, 1547
HphI GGTGA 3 cut(s) 144, 673, 1577
Hpy166II GTNNAC 1 cut(s) 1396
Hpy188III TCNNGA 3 cut(s) 769, 1159, 1586
Hpy8I GTNNAC 1 cut(s) 1396
HpyAV CCTTC 3 cut(s) 660, 1122, 1546
HpyCH4III ACNGT 3 cut(s) 170, 1351, 1420
HpyCH4IV ACGT 1 cut(s) 1434
HpyCH4V TGCA 5 cut(s) 253, 1106, 1199, 1239, 1639
HpyF10VI GCNNNNNNNGC 5 cut(s) 550, 559, 563, 832, 890
HpyF3I CTNAG 6 cut(s) 183, 548, 1134, 1371, 1477, 1795
HpySE526I ACGT 1 cut(s) 1434
HspAI GCGC 1 cut(s) 649
Kpn2I TCCGGA 1 cut(s) 1158
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 5 cut(s) 376, 581, 755, 987, 1166
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 2 cut(s) 688, 911
Lsp1109I GCAGC 6 cut(s) 104, 787, 1048, 1183, 1211, 1413
LweI GCATC 3 cut(s) 226, 262, 321
MaeI CTAG 1 cut(s) 963
MaeII ACGT 1 cut(s) 1434
MaeIII GTNAC 5 cut(s) 150, 170, 992, 1379, 1430
MalI GATC 5 cut(s) 378, 583, 757, 989, 1168
MboI GATC 5 cut(s) 376, 581, 755, 987, 1166
MfeI CAATTG 2 cut(s) 1315, 1722
MflI RGATCY 2 cut(s) 581, 987
MhlI GDGCHC 4 cut(s) 693, 908, 1142, 1425
MlyI GAGTC 2 cut(s) 339, 1280
MmeI TCCRAC 1 cut(s) 1602
MroI TCCGGA 1 cut(s) 1158
MroNI GCCGGC 1 cut(s) 239
MroXI GAANNNNTTC 2 cut(s) 781, 1326
MseI TTAA 4 cut(s) 278, 591, 1050, 1281
MslI CAYNNNNRTG 4 cut(s) 265, 965, 1265, 1512
MspI CCGG 5 cut(s) 240, 441, 1159, 1247, 1547
MspR9I CCNGG 1 cut(s) 1547
MunI CAATTG 2 cut(s) 1315, 1722
MwoI GCNNNNNNNGC 5 cut(s) 550, 559, 563, 832, 890
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 1547
NdeI CATATG 1 cut(s) 1058
NdeII GATC 5 cut(s) 376, 581, 755, 987, 1166
NgoMIV GCCGGC 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 22, 736
NmuCI GTSAC 3 cut(s) 150, 170, 1379
NspI RCATGY 3 cut(s) 51, 270, 1233
PciI ACATGT 2 cut(s) 47, 1229
PciSI GCTCTTC 1 cut(s) 1026
PdiI GCCGGC 1 cut(s) 241
PdmI GAANNNNTTC 2 cut(s) 781, 1326
PfeI GAWTC 3 cut(s) 517, 595, 1462
PkrI GCNGC 6 cut(s) 94, 802, 1038, 1198, 1201, 1403
PleI GAGTC 2 cut(s) 338, 1279
PpsI GAGTC 2 cut(s) 338, 1279
PscI ACATGT 2 cut(s) 47, 1229
Psp124BI GAGCTC 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 893
PspN4I GGNNCC 2 cut(s) 22, 736
PspPI GGNCC 4 cut(s) 20, 734, 833, 927
PsrI GAACNNNNNNTAC 2 cut(s) 1207, 1239
PstI CTGCAG 1 cut(s) 1201
PstNI CAGNNNCTG 1 cut(s) 1459
PsuI RGATCY 2 cut(s) 581, 987
RsaI GTAC 4 cut(s) 40, 360, 621, 1397
RsaNI GTAC 4 cut(s) 39, 359, 620, 1396
RseI CAYNNNNRTG 4 cut(s) 265, 965, 1265, 1512
SacI GAGCTC 1 cut(s) 693
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 4 cut(s) 278, 591, 1050, 1281
SatI GCNGC 6 cut(s) 93, 801, 1037, 1197, 1200, 1402
Sau3AI GATC 5 cut(s) 376, 581, 755, 987, 1166
Sau96I GGNCC 4 cut(s) 20, 734, 833, 927
SchI GAGTC 2 cut(s) 339, 1280
ScrFI CCNGG 1 cut(s) 1547
SduI GDGCHC 4 cut(s) 693, 908, 1142, 1425
SfaNI GCATC 3 cut(s) 226, 262, 321
SfcI CTRYAG 2 cut(s) 700, 1197
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 4 cut(s) 265, 965, 1265, 1512
SmlI CTYRAG 3 cut(s) 470, 821, 1586
SmoI CTYRAG 3 cut(s) 470, 821, 1586
SspMI CTAG 1 cut(s) 963
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 1545
StyI CCWWGG 2 cut(s) 1203, 1471
TaaI ACNGT 3 cut(s) 170, 1351, 1420
TaiI ACGT 1 cut(s) 1437
TaqI TCGA 2 cut(s) 693, 806
TaqII GACCGA 2 cut(s) 189, 971
TatI WGTACW 1 cut(s) 1395
TfiI GAWTC 3 cut(s) 517, 595, 1462
Tru1I TTAA 4 cut(s) 278, 591, 1050, 1281
Tru9I TTAA 4 cut(s) 278, 591, 1050, 1281
TscAI CASTG 2 cut(s) 660, 1464
TseFI GTSAC 3 cut(s) 150, 170, 1379
TseI GCWGC 6 cut(s) 92, 800, 1036, 1196, 1199, 1401
Tsp45I GTSAC 3 cut(s) 150, 170, 1379
TspDTI ATGAA 8 cut(s) 774, 1041, 1095, 1255, 1530, 1634, 1685, 1707
TspGWI ACGGA 2 cut(s) 898, 1285
TspRI CASTG 2 cut(s) 660, 1464
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 5 cut(s) 395, 695, 977, 1518, 1740
XceI RCATGY 3 cut(s) 51, 270, 1233
XmnI GAANNNNTTC 2 cut(s) 781, 1326
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.