Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001665.1

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

190389 .. 191072

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001665.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggccatcaccacaacctcctcatctctctcttccctctcctcactctccctctccctcaactcttctcctcaccattccctcctcctccgtttcaccacttccttccccaagcccacaaaacccatctctctcttcctctcctctccacgacccaccctccccatccccaatgccgaaccaccccacaccgaaaccaccttcttctccaccgacgaccccgaatgcgacgccgccttcgaccccccggagcccccggaaggcttcgtcccgccgccctccttcgacgacgagccgttggagacagaggagcaaatcgccaaagcgtacgaggagctctacgggccggcctacagcggcgtcagcgttctgggcaatgacgtgtacgtgatggactcgaaggtgagaaagttgggtgcttttgggaaagtgaagaaggagaagattcgagatgggtttgaggagagagtggtggaggtgaggagagtgaccaaggttgtgaaaggagggaagcaattgcatttcagggttatagtggtggtgggtgacaagagaggttgtgtgggtgtgggtgtgggcaaggctaaggaggttattgatggggttcagaaggctgctgtcaatgctaggaggaacattgtcactgtccccatgaccaagtacttgacttttcctcataggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

227

Amino Acids

24.82

Weight (kDa)

8.45

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	234, 272, 275, 357
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	231, 360
AfaI	GTAC	3 cut(s)	329, 386, 662
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	382
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	3, 344, 348
ApeKI	GCWGC	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	2 cut(s)	248, 257
AsuHPI	GGTGA	5 cut(s)	65, 88, 415, 490, 557
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	255, 339
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	6 cut(s)	14, 134, 173, 385, 446, 593
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	2 cut(s)	248, 257
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	4 cut(s)	234, 275, 358, 615
BlsI	GCNGC	4 cut(s)	235, 276, 359, 616
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	248, 257
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	248, 257
Bpu10I	CCTNAGC	1 cut(s)	585
BpuMI	CCSGG	2 cut(s)	248, 257
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	2 cut(s)	231, 360
BsaJI	CCNNGG	3 cut(s)	246, 255, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	246, 255, 492
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	601
BshFI	GGCC	3 cut(s)	5, 346, 350
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	248, 257, 347
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	254, 632
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	254, 632
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	5, 346, 350
Bsp1286I	GDGCHC	2 cut(s)	255, 339
BspACI	CCGC	4 cut(s)	234, 272, 275, 357
BspANI	GGCC	3 cut(s)	5, 346, 350
BspLI	GGNNCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	246, 255, 492
BssNI	GRCGYC	2 cut(s)	231, 360
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	3 cut(s)	37, 70, 140
BstACI	GRCGYC	2 cut(s)	231, 360
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	4 cut(s)	343, 363, 372, 623
BstSCI	CCNGG	2 cut(s)	246, 255
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	601
BsuRI	GGCC	3 cut(s)	5, 346, 350
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	2 cut(s)	239, 349
Csp6I	GTAC	3 cut(s)	328, 385, 661
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	3 cut(s)	328, 385, 661
DdeI	CTNAG	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	37, 70, 140
EarI	CTCTTC	3 cut(s)	37, 70, 140
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	2 cut(s)	255, 339
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	2 cut(s)	255, 339
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	1 cut(s)	655
FaiI	YATR	3 cut(s)	533, 653, 678
FaqI	GGGAC	2 cut(s)	254, 632
FatI	CATG	1 cut(s)	651
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	234, 275, 358, 615
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	255, 339
FseI	GGCCGGCC	1 cut(s)	350
Fsp4HI	GCNGC	4 cut(s)	234, 275, 358, 615
FspBI	CTAG	1 cut(s)	627
GluI	GCNGC	4 cut(s)	234, 275, 358, 615
HaeIII	GGCC	3 cut(s)	5, 346, 350
HapII	CCGG	3 cut(s)	248, 257, 347
HgaI	GACGC	2 cut(s)	239, 349
Hin1I	GRCGYC	2 cut(s)	231, 360
Hin1II	CATG	1 cut(s)	655
HinfI	GANTC	2 cut(s)	395, 445
HpaII	CCGG	3 cut(s)	248, 257, 347
HphI	GGTGA	5 cut(s)	65, 88, 415, 490, 557
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	4 cut(s)	218, 233, 290, 293
HpyAV	CCTTC	8 cut(s)	115, 211, 247, 254, 292, 394, 430, 604
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	381, 387
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	343, 363, 372, 623
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	2 cut(s)	381, 387
Hsp92I	GRCGYC	2 cut(s)	231, 360
Hsp92II	CATG	1 cut(s)	655
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
LmnI	GCTCC	3 cut(s)	250, 310, 334
LpnPI	CCDG	5 cut(s)	261, 270, 356, 360, 511
Lsp1109I	GCAGC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	381, 387
MaeIII	GTNAC	3 cut(s)	487, 545, 640
MboII	GAAGA	6 cut(s)	24, 57, 127, 196, 445, 454
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	255, 339
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	515
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	3 cut(s)	248, 257, 347
MspR9I	CCNGG	2 cut(s)	248, 257
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	343, 363, 372, 623
NaeI	GCCGGC	1 cut(s)	348
NciI	CCSGG	2 cut(s)	248, 257
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	3 cut(s)	487, 545, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	445
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	4 cut(s)	235, 276, 359, 616
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	339
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	344
RigI	GGCCGGCC	1 cut(s)	350
RsaI	GTAC	3 cut(s)	329, 386, 662
RsaNI	GTAC	3 cut(s)	328, 385, 661
SacI	GAGCTC	1 cut(s)	339
SatI	GCNGC	4 cut(s)	234, 275, 358, 615
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	248, 257
SduI	GDGCHC	2 cut(s)	255, 339
SfcI	CTRYAG	1 cut(s)	352
Sse9I	AATT	1 cut(s)	515
SsiI	CCGC	4 cut(s)	234, 272, 275, 357
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	246, 255
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	2 cut(s)	384, 390
TaqI	TCGA	4 cut(s)	240, 285, 398, 448
TasI	AATT	1 cut(s)	515
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	3 cut(s)	236, 277, 360
TfiI	GAWTC	1 cut(s)	445
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	3 cut(s)	487, 545, 640
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	3 cut(s)	487, 545, 640
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	649
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.