RH5CG074500

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG074500.1

Sequence Viewer

Length: 933 bp
ATGGCCATGACCACAGCCTCCTCAACTCTCTCTTCCTTCTCCTCCCTCTCCCTCCACACCTCTCCACGCCTCTCTCTCCTCCCTTTCACCGCCACGAACACTTCCCTGACCAAACTCAAGTCTCCCATTTCTCTCTTCATCTCTTCCTCTCCACGCCTTACCACCACTACATGCAATGCCGAACAACCCGAGATAGAGACCACCTTCTTCGACAACGACGACCCAGAGTACGAGGCCGTCTTCGAGCCCCCGGAGGCCCCGGAAGGCTTCGTCCCCCCGCCCTCCTTCGACGAGGGGTCGTTGGAGACGGAGGACGAAGTAGCCGCGGCCTACGAGGAGCTCTACGGCCCCGCCTACAGCGGCATGAGCGTTCTCGGGAACGACATCTATGTGATGGACGCCAAGGTGAAGAAGCTGGGCGCTTTTGGGAAGTTGAAGAAGGAGAAGATCAGAGATGGGTTTGAGGAGAGAGTGGTTCAGGTGAGGAGGGTGACTAAGGTTGTGAAAGGAGGGAAGCAGTTGCATTTTAGGGCTGTAGTGGTGGTGGGTGACAAGCAAGGCAATGTGGGTGTTGGTGTGGGAAAGGCCAAGGAGGTCATTGGAGCGGTTCAAAAGTCTGCTGTCAATGCTAGAAGGAACATCATCACTGTGCCCATGACCAAGTACTTGACCTTTCCTCACAGATCTGAGGGAGATTATGGAGCAGCCAAAGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCTGGAGGGTCCGTGAGAATTGTTCTAGAAATGGCAGGTGTTGAAAATGCTCTAGGAAAGCAACTTGGAAGTAAGAATGCTCTCAACAATGCCAGAGCCACAGTAGTTGCAGTACAGAAAATGAGACAGTTCCGTGAAGTCGCACTTGACCGTGGGATTCCAATGGAAGAGCTTTGGAAATGA

Protein Analysis

310

Amino Acids

33.49

Weight (kDa)

8.78

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S5 PF00333 154 - 218 1.1e-22 Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 231 - 301 2.1e-24 Ribosomal protein S5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 776
Acc36I ACCTGC 2 cut(s) 733, 776
AccBSI CCGCTC 1 cut(s) 605
AccII CGCG 1 cut(s) 326
AciI CCGC 7 cut(s) 90, 278, 324, 326, 351, 360, 605
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 4 cut(s) 230, 665, 739, 864
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 3 cut(s) 436, 611, 794
AhdI GACNNNNNGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 733
AluBI AGCT 3 cut(s) 340, 415, 922
AluI AGCT 3 cut(s) 340, 415, 922
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 4 cut(s) 126, 191, 299, 868
Ama87I CYCGRG 2 cut(s) 188, 374
AoxI GGCC 6 cut(s) 3, 234, 255, 327, 346, 585
ApeKI GCWGC 1 cut(s) 704
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 3 cut(s) 256, 347, 759
AsuC2I CCSGG 2 cut(s) 251, 260
AsuHPI GGTGA 5 cut(s) 79, 418, 493, 502, 560
AvaI CYCGRG 2 cut(s) 188, 374
AvaII GGWCC 1 cut(s) 759
BaeGI GKGCMC 1 cut(s) 654
BaeI ACNNNNGTAYC 2 cut(s) 729, 762
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 249, 342
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 716
BccI CCATC 2 cut(s) 388, 449
BceAI ACGGC 2 cut(s) 221, 361
BciT130I CCWGG 1 cut(s) 735
BcnI CCSGG 2 cut(s) 251, 260
BcoDI GTCTC 4 cut(s) 126, 191, 299, 868
BfaI CTAG 3 cut(s) 630, 776, 803
BfmI CTRYAG 2 cut(s) 355, 534
BfoI RGCGCY 1 cut(s) 423
BfuAI ACCTGC 2 cut(s) 733, 776
BglII AGATCT 1 cut(s) 683
BisI GCNGC 4 cut(s) 324, 327, 361, 705
BlsI GCNGC 4 cut(s) 325, 328, 362, 706
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 3 cut(s) 251, 260, 735
Bme18I GGWCC 1 cut(s) 759
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 188, 374
BmgT120I GGNCC 3 cut(s) 256, 347, 759
BmiI GGNNCC 3 cut(s) 258, 349, 760
BmrFI CCNGG 3 cut(s) 251, 260, 735
BmsI GCATC 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 232
BpmI CTGGAG 2 cut(s) 762, 774
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 251, 260
BsaHI GRCGYC 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 249, 258, 324, 402, 588, 901
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 1 cut(s) 745
Bse3DI GCAATG 2 cut(s) 181, 568
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 6 cut(s) 249, 258, 324, 402, 588, 901
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMI GCAATG 2 cut(s) 181, 568
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 6 cut(s) 10, 31, 68, 350, 479, 499
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 1 cut(s) 716
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 6 cut(s) 5, 236, 257, 329, 348, 587
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 2 cut(s) 188, 374
BsiSI CCGG 2 cut(s) 251, 260
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 740
BsmAI GTCTC 4 cut(s) 126, 191, 299, 868
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 6 cut(s) 5, 236, 257, 329, 348, 587
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 188, 374
Bsp1286I GDGCHC 3 cut(s) 249, 342, 654
Bsp143I GATC 2 cut(s) 447, 683
BspACI CCGC 7 cut(s) 90, 278, 324, 326, 351, 360, 605
BspANI GGCC 6 cut(s) 5, 236, 257, 329, 348, 587
BspCNI CTCAG 1 cut(s) 679
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 3 cut(s) 258, 349, 760
BspMI ACCTGC 2 cut(s) 733, 776
BspQI GCTCTTC 1 cut(s) 912
BspTNI GGTCTC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 605
BsrDI GCAATG 2 cut(s) 181, 568
BsrI ACTGG 1 cut(s) 745
BssECI CCNNGG 6 cut(s) 249, 258, 324, 402, 588, 901
BssMI GATC 2 cut(s) 447, 683
BssNI GRCGYC 1 cut(s) 399
BssT1I CCWWGG 2 cut(s) 402, 588
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 4 cut(s) 649, 853, 879, 902
Bst6I CTCTTC 4 cut(s) 37, 140, 148, 912
BstACI GRCGYC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 495, 687, 719
BstDSI CCRYGG 2 cut(s) 324, 901
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 2 cut(s) 450, 686
BstMAI GTCTC 4 cut(s) 126, 191, 299, 868
BstMBI GATC 2 cut(s) 447, 683
BstMWI GCNNNNNNNGC 2 cut(s) 366, 626
BstNI CCWGG 1 cut(s) 735
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 3 cut(s) 249, 258, 733
BstSFI CTRYAG 2 cut(s) 355, 534
BstSLI GKGCMC 1 cut(s) 654
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 716
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuRI GGCC 6 cut(s) 5, 236, 257, 329, 348, 587
BtgI CCRYGG 2 cut(s) 324, 901
BtsIMutI CAGTG 1 cut(s) 645
BveI ACCTGC 2 cut(s) 733, 776
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 3 cut(s) 256, 347, 759
Cfr42I CCGCGG 1 cut(s) 327
CseI GACGC 1 cut(s) 407
Csp6I GTAC 4 cut(s) 229, 664, 738, 863
CspCI CAANNNNNGTGG 2 cut(s) 838, 873
CviAII CATG 4 cut(s) 7, 171, 364, 655
CviQI GTAC 4 cut(s) 229, 664, 738, 863
DdeI CTNAG 3 cut(s) 495, 687, 719
DpnI GATC 2 cut(s) 449, 685
DpnII GATC 2 cut(s) 447, 683
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 37, 140, 148, 912
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 4 cut(s) 37, 140, 148, 912
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 402, 588
Eco24I GRGCYC 2 cut(s) 249, 342
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 340
Eco88I CYCGRG 2 cut(s) 188, 374
EcoICRI GAGCTC 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 402, 588
EcoT38I GRGCYC 2 cut(s) 249, 342
ErhI CCWWGG 2 cut(s) 402, 588
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 4 cut(s) 10, 174, 367, 658
FaiI YATR 6 cut(s) 8, 172, 365, 390, 656, 699
FalI AAGNNNNNCTT 4 cut(s) 702, 734, 879, 911
FaqI GGGAC 1 cut(s) 257
FatI CATG 4 cut(s) 6, 170, 363, 654
FauI CCCGC 2 cut(s) 285, 358
Fnu4HI GCNGC 4 cut(s) 324, 327, 361, 705
FriOI GRGCYC 2 cut(s) 249, 342
Fsp4HI GCNGC 4 cut(s) 324, 327, 361, 705
FspBI CTAG 3 cut(s) 630, 776, 803
GlaI GCGC 1 cut(s) 421
GluI GCNGC 4 cut(s) 324, 327, 361, 705
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 2 cut(s) 762, 774
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 6 cut(s) 5, 236, 257, 329, 348, 587
HapII CCGG 2 cut(s) 251, 260
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 4 cut(s) 10, 174, 367, 658
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HinfI GANTC 1 cut(s) 907
HpaII CCGG 2 cut(s) 251, 260
HphI GGTGA 5 cut(s) 79, 418, 493, 502, 560
Hpy188I TCNGA 2 cut(s) 452, 688
Hpy188III TCNNGA 2 cut(s) 376, 776
Hpy99I CGWCG 2 cut(s) 221, 293
HpyAV CCTTC 6 cut(s) 46, 214, 257, 295, 433, 627
HpyCH4III ACNGT 4 cut(s) 649, 853, 879, 902
HpyCH4V TGCA 3 cut(s) 174, 523, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 626
HpyF3I CTNAG 3 cut(s) 495, 687, 719
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 4 cut(s) 10, 174, 367, 658
HspAI GCGC 1 cut(s) 420
KspI CCGCGG 1 cut(s) 327
Kzo9I GATC 2 cut(s) 447, 683
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 3 cut(s) 337, 602, 701
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 1 cut(s) 705
MaeI CTAG 3 cut(s) 630, 776, 803
MaeIII GTNAC 2 cut(s) 490, 548
MalI GATC 2 cut(s) 449, 685
MbiI CCGCTC 1 cut(s) 605
MboI GATC 2 cut(s) 447, 683
MboII GAAGA 9 cut(s) 24, 127, 135, 199, 232, 421, 448, 457, 929
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 3 cut(s) 249, 342, 654
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 768
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 389, 647
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 326, 360
MspI CCGG 2 cut(s) 251, 260
MspR9I CCNGG 3 cut(s) 251, 260, 735
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 735
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 366, 626
NciI CCSGG 2 cut(s) 251, 260
NdeII GATC 2 cut(s) 447, 683
NlaIII CATG 4 cut(s) 10, 174, 367, 658
NlaIV GGNNCC 3 cut(s) 258, 349, 760
NmuCI GTSAC 2 cut(s) 490, 548
NspI RCATGY 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 776
PciSI GCTCTTC 1 cut(s) 912
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 1 cut(s) 907
PkrI GCNGC 4 cut(s) 325, 328, 362, 706
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 733
PspN4I GGNNCC 3 cut(s) 258, 349, 760
PspPI GGNCC 3 cut(s) 256, 347, 759
PsuI RGATCY 1 cut(s) 683
RsaI GTAC 4 cut(s) 230, 665, 739, 864
RsaNI GTAC 4 cut(s) 229, 664, 738, 863
RseI CAYNNNNRTG 2 cut(s) 389, 647
SacI GAGCTC 1 cut(s) 342
SacII CCGCGG 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 912
SatI GCNGC 4 cut(s) 324, 327, 361, 705
Sau3AI GATC 2 cut(s) 447, 683
Sau96I GGNCC 3 cut(s) 256, 347, 759
ScaI AGTACT 1 cut(s) 665
ScrFI CCNGG 3 cut(s) 251, 260, 735
SduI GDGCHC 3 cut(s) 249, 342, 654
SfaNI GCATC 1 cut(s) 705
SfcI CTRYAG 2 cut(s) 355, 534
Sfr303I CCGCGG 1 cut(s) 327
SgrBI CCGCGG 1 cut(s) 327
SinI GGWCC 1 cut(s) 759
SmiMI CAYNNNNRTG 2 cut(s) 389, 647
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 768
SsiI CCGC 7 cut(s) 90, 278, 324, 326, 351, 360, 605
SspMI CTAG 3 cut(s) 630, 776, 803
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 249, 258, 733
StyI CCWWGG 2 cut(s) 402, 588
TaaI ACNGT 4 cut(s) 649, 853, 879, 902
TaqI TCGA 3 cut(s) 210, 243, 288
TasI AATT 1 cut(s) 768
TatI WGTACW 2 cut(s) 663, 862
TauI GCSGC 3 cut(s) 326, 329, 363
TfiI GAWTC 1 cut(s) 907
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 2 cut(s) 490, 548
TseI GCWGC 1 cut(s) 704
Tsp45I GTSAC 2 cut(s) 490, 548
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 3 cut(s) 323, 751, 872
TspRI CASTG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 759
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 174
XspI CTAG 3 cut(s) 630, 776, 803
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.