AT2G34355

Nodulin-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14496206 .. 14498510
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34355.1

Sequence Viewer

Length: 1572 bp
ATGGAGAGAATAAACACGAAATGGGTAGCAGCAGCAGCGAGTATATGGATTCAAAGCTTTAGCGGAGCTACATACACATTCGCTATCTACTCTTCAATCCTCAAATCATCTCAATCTTATGACCAGTCTACTCTTGATTTCGTCTCTGTCTTCAAAGACATCGGTGGTACCTTTGGTATCATCTCCGGTTTCCTTTACACGGCTATGACTTCTAAGTCACGCGGTTTTGGTGGGCCTTGGGTTGTTGTTTTCGTTGGGTTGGTTCAGTGGTTTGTTGGATTCTTTTTTATTTGGGCTTCGGTGGTTGGGTTGATTGCTCCGCCGCCTGTGCCGTTGATGTGCTTGTTCGTGTTCTTGGCTGGTCACTCCTTGCCGTTTTTCAATACGGCTAATGTTGTGACGGCTGCTCGGAACTTTTCTCAATATGGTGGGACTGCTGTTGGTATTATGCAGGGATTTTTAGGACTAAGTGGAGCAATTCTGATTCAGTTGTACCATGCGGTCTGCGGTGGTGAAGGTAACCCCGCTACTTTCATTCTTCTCCTGGCCATAGTACCAACGCTTGTCATGTTCTTGGCTATGCCTTTTGTAAGAGTTTATGAAACGGTGACCATTAGTGACAAGAAACACTTGGATGGTCTCTCTGCGATCTCTATGATCATTGCCGCCTATCTTATGGTCGTTATAACGGTTGAAAACGTTCTCGGTTTATCACGCTCAATGCAGATTTTCTCCTTCATCCTTGTCCTTTTGTTGCTTGCCTCTCCCCTCTTGGTTGCTGTAAGAGCCCTACGAGAAAAAAGGCAGACACTTTCTTCTCTGGATGGTCCTGTTCTCGACACATCTGCCTTGCTCGACCCTCCTAGTTCAAACATTTTTCCCGATGGAGATCATTTGGTTGCTGAAGATTCAAACATACTGGAAGCAATGAGCACAGTGAACTTTTGGCTACTCTTCTTGGCAATGCTATGCGGGATGGGTTCTGGATTCGCGACTGTAAACAACATGAGACAGATAGGCGAGTCTCTTCGCTACTCTTCTGTTCAACTCAATTCTCTAGTCTCTCTCTGGAGCATATGGAACTTTCTGGGCCGGTTCGGGGCTGGTTATGTCTCAGACACATTCTTACACAAACACAGCTGGCCAAGACCGATCTTCATGGCCATAACTCTAGGTGTTATGGCTATAGGCCATATCATAGTTGCCTCTGGTGTACAAGGCAGTCTCTATGCCGGTTCAGTTTTGATCGGTATGGCTTACGGTTCGCAATGGTCGCTGATGCCAACAATCACATCAGAGATATTTGGGATCCGGCATATGGGAACGATTTACTTCACGATTTCGATTGCAGGTCCCATCGGGTCGTACATCCTCTCTGTGAAAGTGATAGGTTACTTCTACGACAAAGTGGCTTCTGAAGATGACAATTCTTGCTTTGGAAGTCAATGTTTCAGGACATCTTTTATGATCATGGCTTCTGTGGCTCTCTTTGGCTCTTTGGTTGCTTCTGTATTGTTCTTCCGCACACACAAGTTTTACAAAAACCTTGTAGCAAAGAGGAACTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

56.93

Weight (kDa)

8.84

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 7 - 260 4.1e-59 Nodulin-like
NFD4_C PF23262 309 - 513 8.4e-19 NFD4, C-terminal domain
MFS_1 PF07690 318 - 515 7.9e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AasI GACNNNNNNGTC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 1340
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 128
AccII CGCG 2 cut(s) 222, 992
AclI AACGTT 1 cut(s) 699
AclWI GGATC 2 cut(s) 1303, 1316
AcoI YGGCCR 3 cut(s) 546, 1142, 1161
AcuI CTGAAG 2 cut(s) 924, 1437
AfaI GTAC 5 cut(s) 169, 494, 555, 1215, 1367
AfiI CCNNNNNNNGG 3 cut(s) 199, 1099, 1318
AgsI TTSAA 9 cut(s) 53, 96, 154, 382, 695, 870, 912, 1046, 1567
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 3 cut(s) 57, 68, 1140
AluI AGCT 3 cut(s) 57, 68, 1140
Alw21I GWGCWC 1 cut(s) 935
Alw26I GTCTC 7 cut(s) 148, 644, 1003, 1029, 1066, 1117, 1229
AlwI GGATC 2 cut(s) 1303, 1316
AoxI GGCC 6 cut(s) 233, 546, 1090, 1142, 1161, 1189
ApeKI GCWGC 4 cut(s) 29, 32, 35, 404
Asp700I GAANNNNTTC 1 cut(s) 699
Asp718I GGTACC 1 cut(s) 167
AspS9I GGNCC 4 cut(s) 233, 827, 1090, 1352
AsuHPI GGTGA 2 cut(s) 524, 619
AvaII GGWCC 2 cut(s) 827, 1352
BalI TGGCCA 3 cut(s) 548, 1144, 1163
BamHI GGATCC 1 cut(s) 1308
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 935
BbvI GCAGC 4 cut(s) 41, 44, 47, 391
BccI CCATC 5 cut(s) 629, 818, 878, 970, 1364
BceAI ACGGC 5 cut(s) 216, 316, 358, 402, 417
BcgI CGANNNNNNTGC 2 cut(s) 827, 861
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 2 cut(s) 657, 1467
BcoDI GTCTC 7 cut(s) 148, 644, 1003, 1029, 1066, 1117, 1229
BfaI CTAG 3 cut(s) 864, 1058, 1172
BfmI CTRYAG 1 cut(s) 1185
BfuAI ACCTGC 1 cut(s) 1340
BisI GCNGC 6 cut(s) 30, 33, 36, 323, 405, 666
BlsI GCNGC 6 cut(s) 31, 34, 37, 324, 406, 667
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 2 cut(s) 827, 1352
BmgT120I GGNCC 4 cut(s) 233, 827, 1090, 1352
BmiI GGNNCC 3 cut(s) 169, 1310, 1354
BmrFI CCNGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 1269
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 1090
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 1099, 1318
Bse118I RCCGGY 2 cut(s) 1092, 1232
Bse1I ACTGG 2 cut(s) 124, 924
Bse3DI GCAATG 4 cut(s) 660, 933, 969, 1274
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 5 cut(s) 640, 738, 829, 981, 1368
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 3 cut(s) 199, 1099, 1318
BseMI GCAATG 4 cut(s) 660, 933, 969, 1274
BseMII CTCAG 1 cut(s) 1128
BseNI ACTGG 2 cut(s) 124, 924
BseXI GCAGC 4 cut(s) 41, 44, 47, 391
Bsh1236I CGCG 2 cut(s) 222, 992
BshFI GGCC 6 cut(s) 235, 548, 1092, 1144, 1163, 1191
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 935
BsiSI CCGG 4 cut(s) 186, 1093, 1233, 1312
BslFI GGGAC 2 cut(s) 445, 1338
BslI CCNNNNNNNGG 3 cut(s) 199, 1099, 1318
BsmAI GTCTC 7 cut(s) 148, 644, 1003, 1029, 1066, 1117, 1229
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 445, 1338
BsnI GGCC 6 cut(s) 235, 548, 1092, 1144, 1163, 1191
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 790, 935
Bsp1407I TGTACA 1 cut(s) 1213
Bsp143I GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
Bsp68I TCGCGA 1 cut(s) 992
BspANI GGCC 6 cut(s) 235, 548, 1092, 1144, 1163, 1191
BspCNI CTCAG 1 cut(s) 1127
BspFNI CGCG 2 cut(s) 222, 992
BspLI GGNNCC 3 cut(s) 169, 1310, 1354
BspMI ACCTGC 1 cut(s) 1340
BspPI GGATC 2 cut(s) 1303, 1316
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 4 cut(s) 660, 933, 969, 1274
BsrFI RCCGGY 2 cut(s) 1092, 1232
BsrGI TGTACA 1 cut(s) 1213
BsrI ACTGG 2 cut(s) 124, 924
BssAI RCCGGY 2 cut(s) 1092, 1232
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 5 cut(s) 607, 691, 937, 997, 1262
Bst6I CTCTTC 4 cut(s) 97, 959, 1032, 1042
BstAUI TGTACA 1 cut(s) 1213
BstC8I GCNNGC 2 cut(s) 759, 1142
BstDEI CTNAG 3 cut(s) 213, 467, 1114
BstEII GGTNACC 2 cut(s) 518, 607
BstF5I GGATG 5 cut(s) 640, 738, 829, 981, 1368
BstFNI CGCG 2 cut(s) 222, 992
BstKTI GATC 7 cut(s) 651, 660, 892, 1155, 1248, 1311, 1470
BstMAI GTCTC 7 cut(s) 148, 644, 1003, 1029, 1066, 1117, 1229
BstMBI GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
BstMWI GCNNNNNNNGC 5 cut(s) 35, 328, 785, 1273, 1481
BstNI CCWGG 1 cut(s) 545
BstPI GGTNACC 2 cut(s) 518, 607
BstSCI CCNGG 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 1185
BstUI CGCG 2 cut(s) 222, 992
BstV1I GCAGC 4 cut(s) 41, 44, 47, 391
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 1308
BstYI RGATCY 1 cut(s) 1308
BsuRI GGCC 6 cut(s) 235, 548, 1092, 1144, 1163, 1191
BtsCI GGATG 5 cut(s) 640, 738, 829, 981, 1368
BtsIMutI CAGTG 2 cut(s) 272, 942
BtuMI TCGCGA 1 cut(s) 992
BveI ACCTGC 1 cut(s) 1340
Cac8I GCNNGC 2 cut(s) 759, 1142
Cfr10I RCCGGY 2 cut(s) 1092, 1232
Cfr13I GGNCC 4 cut(s) 233, 827, 1090, 1352
Csp6I GTAC 5 cut(s) 168, 493, 554, 1214, 1366
CviAII CATG 5 cut(s) 497, 568, 1006, 1159, 1471
CviQI GTAC 5 cut(s) 168, 493, 554, 1214, 1366
DdeI CTNAG 3 cut(s) 213, 467, 1114
DpnI GATC 7 cut(s) 650, 659, 891, 1154, 1247, 1310, 1469
DpnII GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
DrdI GACNNNNNNGTC 1 cut(s) 214
DseDI GACNNNNNNGTC 1 cut(s) 214
EaeI YGGCCR 3 cut(s) 546, 1142, 1161
Eam1104I CTCTTC 4 cut(s) 97, 959, 1032, 1042
EarI CTCTTC 4 cut(s) 97, 959, 1032, 1042
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 827, 1352
Eco57I CTGAAG 2 cut(s) 924, 1437
Eco91I GGTNACC 2 cut(s) 518, 607
EcoO109I RGGNCCY 1 cut(s) 1352
EcoO65I GGTNACC 2 cut(s) 518, 607
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 236
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 5 cut(s) 500, 571, 1009, 1162, 1474
FalI AAGNNNNNCTT 3 cut(s) 614, 646, 1547
FaqI GGGAC 2 cut(s) 445, 1338
FatI CATG 5 cut(s) 496, 567, 1005, 1158, 1470
FauI CCCGC 2 cut(s) 532, 965
FauNDI CATATG 2 cut(s) 1076, 1317
FbaI TGATCA 2 cut(s) 657, 1467
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 6 cut(s) 30, 33, 36, 323, 405, 666
FokI GGATG 5 cut(s) 647, 725, 836, 988, 1355
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 6 cut(s) 30, 33, 36, 323, 405, 666
FspBI CTAG 3 cut(s) 864, 1058, 1172
GluI GCNGC 6 cut(s) 30, 33, 36, 323, 405, 666
GsuI CTGGAG 1 cut(s) 1090
HaeIII GGCC 6 cut(s) 235, 548, 1092, 1144, 1163, 1191
HapII CCGG 4 cut(s) 186, 1093, 1233, 1312
Hin1II CATG 5 cut(s) 500, 571, 1009, 1162, 1474
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 6 cut(s) 49, 279, 484, 908, 987, 1022
HpaII CCGG 4 cut(s) 186, 1093, 1233, 1312
HphI GGTGA 2 cut(s) 524, 619
Hpy166II GTNNAC 4 cut(s) 129, 940, 1000, 1214
Hpy188I TCNGA 5 cut(s) 411, 483, 1117, 1297, 1417
Hpy188III TCNNGA 9 cut(s) 134, 821, 836, 881, 984, 991, 1069, 1336, 1453
Hpy8I GTNNAC 4 cut(s) 129, 940, 1000, 1214
HpyAV CCTTC 2 cut(s) 509, 745
HpyCH4III ACNGT 5 cut(s) 607, 691, 937, 997, 1262
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 3 cut(s) 451, 724, 1349
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 328, 785, 1273, 1481
HpyF3I CTNAG 3 cut(s) 213, 467, 1114
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 5 cut(s) 500, 571, 1009, 1162, 1474
KpnI GGTACC 1 cut(s) 171
Ksp22I TGATCA 2 cut(s) 657, 1467
Kzo9I GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
LmnI GCTCC 4 cut(s) 65, 322, 473, 1071
Lsp1109I GCAGC 4 cut(s) 41, 44, 47, 391
LweI GCATC 1 cut(s) 1269
MaeI CTAG 3 cut(s) 864, 1058, 1172
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 7 cut(s) 216, 362, 397, 518, 607, 617, 1391
MalI GATC 7 cut(s) 650, 659, 891, 1154, 1247, 1310, 1469
MboI GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
MflI RGATCY 1 cut(s) 1308
MhlI GDGCHC 2 cut(s) 790, 935
MlsI TGGCCA 3 cut(s) 548, 1144, 1163
MluCI AATT 3 cut(s) 477, 1051, 1426
MluNI TGGCCA 3 cut(s) 548, 1144, 1163
MlyI GAGTC 1 cut(s) 1031
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 7 cut(s) 110, 772, 779, 870, 1216, 1382, 1551
Mox20I TGGCCA 3 cut(s) 548, 1144, 1163
MroXI GAANNNNTTC 1 cut(s) 699
MscI TGGCCA 3 cut(s) 548, 1144, 1163
MslI CAYNNNNRTG 2 cut(s) 203, 633
Msp20I TGGCCA 3 cut(s) 548, 1144, 1163
MspA1I CMGCKG 1 cut(s) 1140
MspI CCGG 4 cut(s) 186, 1093, 1233, 1312
MspR9I CCNGG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 2 cut(s) 222, 992
MwoI GCNNNNNNNGC 5 cut(s) 35, 328, 785, 1273, 1481
NdeI CATATG 2 cut(s) 1076, 1317
NdeII GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
NlaIII CATG 5 cut(s) 500, 571, 1009, 1162, 1474
NlaIV GGNNCC 3 cut(s) 169, 1310, 1354
NmuCI GTSAC 5 cut(s) 216, 362, 397, 607, 617
NruI TCGCGA 1 cut(s) 992
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 5 cut(s) 49, 279, 484, 908, 987
PkrI GCNGC 6 cut(s) 31, 34, 37, 324, 406, 667
PleI GAGTC 1 cut(s) 1030
PpsI GAGTC 1 cut(s) 1030
PpuMI RGGWCCY 1 cut(s) 1352
PsiI TTATAA 1 cut(s) 686
Psp1406I AACGTT 1 cut(s) 699
Psp5II RGGWCCY 1 cut(s) 1352
Psp6I CCWGG 1 cut(s) 543
PspEI GGTNACC 2 cut(s) 518, 607
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 169, 1310, 1354
PspPI GGNCC 4 cut(s) 233, 827, 1090, 1352
PspPPI RGGWCCY 1 cut(s) 1352
PsuI RGATCY 1 cut(s) 1308
PvuII CAGCTG 1 cut(s) 1140
RruI TCGCGA 1 cut(s) 992
RsaI GTAC 5 cut(s) 169, 494, 555, 1215, 1367
RsaNI GTAC 5 cut(s) 168, 493, 554, 1214, 1366
RseI CAYNNNNRTG 2 cut(s) 203, 633
SatI GCNGC 6 cut(s) 30, 33, 36, 323, 405, 666
Sau3AI GATC 7 cut(s) 648, 657, 889, 1152, 1245, 1308, 1467
Sau96I GGNCC 4 cut(s) 233, 827, 1090, 1352
SchI GAGTC 1 cut(s) 1031
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 2 cut(s) 790, 935
SfaNI GCATC 1 cut(s) 1269
SfcI CTRYAG 1 cut(s) 1185
SinI GGWCC 2 cut(s) 827, 1352
SmiMI CAYNNNNRTG 2 cut(s) 203, 633
Sse9I AATT 3 cut(s) 477, 1051, 1426
SspMI CTAG 3 cut(s) 864, 1058, 1172
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 5 cut(s) 607, 691, 937, 997, 1262
TaiI ACGT 1 cut(s) 702
TaqI TCGA 3 cut(s) 837, 855, 1343
TaqII GACCGA 1 cut(s) 1165
TasI AATT 3 cut(s) 477, 1051, 1426
TatI WGTACW 1 cut(s) 1213
TauI GCSGC 2 cut(s) 325, 668
TfiI GAWTC 5 cut(s) 49, 279, 484, 908, 987
TscAI CASTG 2 cut(s) 272, 942
TseFI GTSAC 5 cut(s) 216, 362, 397, 607, 617
TseI GCWGC 4 cut(s) 29, 32, 35, 404
Tsp45I GTSAC 5 cut(s) 216, 362, 397, 607, 617
TspDTI ATGAA 4 cut(s) 523, 615, 727, 1147
TspRI CASTG 2 cut(s) 272, 942
VpaK11BI GGWCC 2 cut(s) 827, 1352
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 3 cut(s) 864, 1058, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.