RchiOBHm_Chr7g0180321

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
2251504 .. 2255103
3600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16079

Sequence Viewer

Length: 1548 bp
ATGGAAGCTAGACTAAAGAATCTGACACGGTCCAAATGGGTGTCTACGGTGGCGAGCATATGGATACAGTGCACCAGCGGCACCCTATACACCTTCTCCGTCTACTCTCAGACCCTCAAGACCACACAGGGCTACGATCAGTCAACTCTCGACACTGTTTCTGTGTTCAAGGACTTTGGAGCCAACTGTGGGATTCTGTCTGGTGTTCTCTATTCTTATAGTGTCTCGTGGGCTGGACCTTGGGTTGTCCTACTGGCCGGAGCAGTCCAGTGCTTTTTGGGCTACTTTCTGATGTGGGCCGCCGTGGTCGGACTTATTCCCCGGCCTCCGGTGGTGGTGATGTGTCTTTTCATGTTGCTAGCGGCGCATGCTCAGTCGTTCTTCAACACTTCTAATGCGGTCACTGGTGTCAGTAATTTCCCTTATTATAAAGGCACCATTGTTGGCATCATGAAGGGATTTCTTGGTCTGAGTGGAGCAATAATAGTTCAAATATATCAGATCTTTATGTACGAAAAAACCACTTCATATCTTCTGATGCTAGCACTGCTGCCTCCAATAAATACTTTGTTGCTTATGTGGTTTGTGAGAATCCGCAACACGAAGGAAGGAAACGAGAAGCAGCATCTGGATAGTCTCTCGATAATTGCTCTTGTTGTTGCGGCTTACCTTATGTGCATTATACTATTAGAGAACTTTATCACTCTGCCATTAGCCATACGTGTTGTTGGTTTTGTTGTACTTGTATTGCTGCTTGCCTCGCCTCTTTGTGTTGTAATCAGAGCACATCAAGGGGAGTTGGATAGTGTTTCAGAGCCTTTCTTAACTGAGGTTGACCGTTTAGAAGATGGTAATGATAAAAGGAGTTTGCGGTCTGATATACACCTGAATCTATTACAAGCAATGTGCACAATAGACTTCTGGATGTTGTTTATTGCCATGGTATGTGGAATGGGCTCGGGACTTGCAGTGGTTAATAATCTTAGCCAAATAGGACAATCGCTTGGTTACAGAAACTTTGAGATAAGTACTTTGGTTTCTTTGCTGAGCATATGGAATTTCTTTGGTCGTTTGGGAGCTGGATATATATCGGATTGTTTCCTGCATCGGAAAGGATGGGCAAGGCCATTGTTCATGGTCATCACTCTAGCATCTATGAGCATTGGCCACGTGGTGATTGCTTCTGGTATGCCTGGTGCTCTCTATACTGGATCTGTATTGGTGGGTGTGTGTTACGGTTCTCAATGGTCACTAATGCCAACAATCACTTCTGAGATATTTGGTGTGCTACATATGGGGACCATCTTCAATGCCATTACCATTGCCAGTCCTGTTGGATCTTATATCTTTTCTGTGAGAGTGATAGGATATATTTATGACAAGGAGGCATCAGAACCAGAGAATACATGCTTTGGAACTCAATGCTTTATGTTATCATTCCTTATTATGGCAGCTGCTACCCTTTTTGGGGCTCTTGCTGCCTTGGCATTGTTCTTTCGGACGAGAAGTTTCTATAGTCAGGACATTGATGGAAACCGCAACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

56.71

Weight (kDa)

8.19

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 12 - 260 5.8e-68 Nodulin-like
NFD4_C PF23262 303 - 506 2e-23 NFD4, C-terminal domain
MFS_1 PF07690 310 - 503 4.6e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB1I GGYRCC 2 cut(s) 80, 434
AccI GTMKAC 2 cut(s) 44, 102
AciI CCGC 8 cut(s) 78, 300, 362, 398, 595, 662, 871, 1537
AclWI GGATC 2 cut(s) 1219, 1345
AcoI YGGCCR 2 cut(s) 255, 1165
AcsI RAATTY 1 cut(s) 1057
AcvI CACGTG 1 cut(s) 1171
AdeI CACNNNGTG 1 cut(s) 1174
AfaI GTAC 3 cut(s) 512, 741, 1030
AfiI CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 4 cut(s) 169, 385, 491, 1309
AjnI CCWGG 1 cut(s) 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 1252, 1284
AluBI AGCT 3 cut(s) 8, 1079, 1454
AluI AGCT 3 cut(s) 8, 1079, 1454
Alw21I GWGCWC 4 cut(s) 74, 787, 911, 1201
Alw26I GTCTC 2 cut(s) 229, 641
Alw44I GTGCAC 2 cut(s) 70, 907
AlwI GGATC 2 cut(s) 1219, 1345
AlwNI CAGNNNCTG 1 cut(s) 628
Ama87I CYCGRG 1 cut(s) 958
AoxI GGCC 5 cut(s) 255, 297, 323, 1124, 1165
ApaLI GTGCAC 2 cut(s) 70, 907
ApeKI GCWGC 6 cut(s) 550, 622, 751, 1451, 1454, 1478
ApoI RAATTY 1 cut(s) 1057
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 4 cut(s) 30, 236, 297, 1299
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 349, 1186
AsuNHI GCTAGC 2 cut(s) 358, 541
AvaI CYCGRG 1 cut(s) 958
AvaII GGWCC 3 cut(s) 30, 236, 1299
BaeGI GKGCMC 2 cut(s) 74, 911
BalI TGGCCA 1 cut(s) 1167
BanI GGYRCC 2 cut(s) 80, 434
BanII GRGCYC 2 cut(s) 959, 1474
BauI CACGAG 1 cut(s) 226
BbrPI CACGTG 1 cut(s) 1171
Bbv12I GWGCWC 4 cut(s) 74, 787, 911, 1201
BbvI GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
BccI CCATC 4 cut(s) 842, 1110, 1310, 1523
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 1194
BciVI GTATCC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 229, 641
BfaI CTAG 4 cut(s) 9, 359, 542, 1148
BfmI CTRYAG 1 cut(s) 1513
BfuI GTATCC 1 cut(s) 57
BglII AGATCT 1 cut(s) 501
BlpI GCTNAGC 1 cut(s) 1046
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 322, 1194
Bme18I GGWCC 3 cut(s) 30, 236, 1299
BmeT110I CYCGRG 1 cut(s) 958
BmgT120I GGNCC 4 cut(s) 30, 236, 297, 1299
BmiI GGNNCC 4 cut(s) 82, 181, 436, 1300
BmrFI CCNGG 2 cut(s) 322, 1194
BmsI GCATC 6 cut(s) 456, 528, 634, 1114, 1160, 1397
BmtI GCTAGC 2 cut(s) 362, 545
Bpu1102I GCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 322
BsaAI YACGTR 2 cut(s) 722, 1171
BsaBI GATNNNNATC 1 cut(s) 1087
BsaJI CCNNGG 5 cut(s) 239, 303, 320, 939, 1482
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
Bse1I ACTGG 5 cut(s) 258, 268, 409, 1213, 1326
Bse3DI GCAATG 2 cut(s) 909, 1320
Bse8I GATNNNNATC 1 cut(s) 1087
BseBI CCWGG 1 cut(s) 1194
BseDI CCNNGG 5 cut(s) 239, 303, 320, 939, 1482
BseGI GGATG 2 cut(s) 930, 1121
BseJI GATNNNNATC 1 cut(s) 1087
BseLI CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
BseMI GCAATG 2 cut(s) 909, 1320
BseMII CTCAG 6 cut(s) 122, 386, 461, 819, 1037, 1263
BseNI ACTGG 5 cut(s) 258, 268, 409, 1213, 1326
BseSI GKGCMC 2 cut(s) 74, 911
BseXI GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
BshFI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BshNI GGYRCC 2 cut(s) 80, 434
BsiHKAI GWGCWC 4 cut(s) 74, 787, 911, 1201
BsiHKCI CYCGRG 1 cut(s) 958
BsiSI CCGG 3 cut(s) 258, 322, 329
BslFI GGGAC 2 cut(s) 975, 1312
BslI CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
BsmAI GTCTC 2 cut(s) 229, 641
BsmFI GGGAC 2 cut(s) 975, 1312
BsnI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BsoBI CYCGRG 1 cut(s) 958
Bsp1286I GDGCHC 6 cut(s) 74, 787, 911, 959, 1201, 1474
Bsp143I GATC 4 cut(s) 136, 501, 1211, 1337
Bsp1720I GCTNAGC 1 cut(s) 1046
Bsp19I CCATGG 1 cut(s) 939
BspACI CCGC 8 cut(s) 78, 300, 362, 398, 595, 662, 871, 1537
BspANI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BspCNI CTCAG 6 cut(s) 121, 385, 462, 820, 1038, 1264
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 4 cut(s) 82, 181, 436, 1300
BspOI GCTAGC 2 cut(s) 362, 545
BspPI GGATC 2 cut(s) 1219, 1345
BspT107I GGYRCC 2 cut(s) 80, 434
BsrDI GCAATG 2 cut(s) 909, 1320
BsrI ACTGG 5 cut(s) 258, 268, 409, 1213, 1326
BssECI CCNNGG 5 cut(s) 239, 303, 320, 939, 1482
BssMI GATC 4 cut(s) 136, 501, 1211, 1337
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 3 cut(s) 239, 939, 1482
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 1194
Bst4CI ACNGT 7 cut(s) 30, 49, 69, 157, 188, 839, 1238
BstBAI YACGTR 2 cut(s) 722, 1171
BstC8I GCNNGC 5 cut(s) 55, 360, 369, 543, 756
BstDEI CTNAG 7 cut(s) 108, 372, 470, 828, 983, 1046, 1272
BstDSI CCRYGG 2 cut(s) 303, 939
BstF5I GGATG 2 cut(s) 930, 1121
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 4 cut(s) 139, 504, 1214, 1340
BstMAI GTCTC 2 cut(s) 229, 641
BstMBI GATC 4 cut(s) 136, 501, 1211, 1337
BstMWI GCNNNNNNNGC 8 cut(s) 78, 279, 364, 368, 547, 760, 1478, 1484
BstNI CCWGG 1 cut(s) 1194
BstNSI RCATGY 2 cut(s) 371, 1410
BstSCI CCNGG 2 cut(s) 320, 1192
BstSFI CTRYAG 1 cut(s) 1513
BstSLI GKGCMC 2 cut(s) 74, 911
BstV1I GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
BstX2I RGATCY 3 cut(s) 501, 1211, 1337
BstYI RGATCY 3 cut(s) 501, 1211, 1337
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BtgI CCRYGG 2 cut(s) 303, 939
BtsCI GGATG 2 cut(s) 930, 1121
BtsI GCAGTG 2 cut(s) 545, 975
BtsIMutI CAGTG 6 cut(s) 74, 153, 275, 402, 545, 975
Cac8I GCNNGC 5 cut(s) 55, 360, 369, 543, 756
CaiI CAGNNNCTG 1 cut(s) 628
CciI TCATGA 1 cut(s) 450
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 4 cut(s) 30, 236, 297, 1299
Csp6I GTAC 3 cut(s) 511, 740, 1029
CviAII CATG 6 cut(s) 352, 368, 451, 940, 1135, 1407
CviQI GTAC 3 cut(s) 511, 740, 1029
DdeI CTNAG 7 cut(s) 108, 372, 470, 828, 983, 1046, 1272
DpnI GATC 4 cut(s) 138, 503, 1213, 1339
DpnII GATC 4 cut(s) 136, 501, 1211, 1337
DraIII CACNNNGTG 1 cut(s) 1174
EaeI YGGCCR 2 cut(s) 255, 1165
Eco130I CCWWGG 3 cut(s) 239, 939, 1482
Eco24I GRGCYC 2 cut(s) 959, 1474
Eco47I GGWCC 3 cut(s) 30, 236, 1299
Eco72I CACGTG 1 cut(s) 1171
Eco88I CYCGRG 1 cut(s) 958
EcoRII CCWGG 1 cut(s) 1192
EcoT14I CCWWGG 3 cut(s) 239, 939, 1482
EcoT38I GRGCYC 2 cut(s) 959, 1474
ErhI CCWWGG 3 cut(s) 239, 939, 1482
FaeI CATG 6 cut(s) 355, 371, 454, 943, 1138, 1410
FaqI GGGAC 2 cut(s) 975, 1312
FatI CATG 6 cut(s) 351, 367, 450, 939, 1134, 1406
FauNDI CATATG 3 cut(s) 59, 1052, 1293
FblI GTMKAC 2 cut(s) 44, 102
FokI GGATG 2 cut(s) 937, 1128
FriOI GRGCYC 2 cut(s) 959, 1474
FspBI CTAG 4 cut(s) 9, 359, 542, 1148
GlaI GCGC 1 cut(s) 366
HaeIII GGCC 5 cut(s) 257, 299, 325, 1126, 1167
HapII CCGG 3 cut(s) 258, 322, 329
HhaI GCGC 1 cut(s) 367
Hin1II CATG 6 cut(s) 355, 371, 454, 943, 1138, 1410
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 2 cut(s) 144, 835
HindII GTYRAC 2 cut(s) 144, 835
HinfI GANTC 4 cut(s) 19, 193, 591, 889
HpaII CCGG 3 cut(s) 258, 322, 329
HphI GGTGA 2 cut(s) 349, 1186
Hpy166II GTNNAC 6 cut(s) 45, 72, 103, 144, 835, 909
Hpy188III TCNNGA 8 cut(s) 118, 149, 451, 629, 640, 922, 960, 1520
Hpy8I GTNNAC 6 cut(s) 45, 72, 103, 144, 835, 909
HpyAV CCTTC 4 cut(s) 103, 448, 598, 602
HpyCH4III ACNGT 7 cut(s) 30, 49, 69, 157, 188, 839, 1238
HpyCH4IV ACGT 2 cut(s) 721, 1170
HpyCH4V TGCA 5 cut(s) 72, 678, 909, 968, 1105
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 279, 364, 368, 547, 760, 1478, 1484
HpyF3I CTNAG 7 cut(s) 108, 372, 470, 828, 983, 1046, 1272
HpySE526I ACGT 2 cut(s) 721, 1170
Hsp92II CATG 6 cut(s) 355, 371, 454, 943, 1138, 1410
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 4 cut(s) 136, 501, 1211, 1337
LmnI GCTCC 4 cut(s) 179, 260, 476, 1076
Lsp1109I GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
LweI GCATC 6 cut(s) 456, 528, 634, 1114, 1160, 1397
MaeI CTAG 4 cut(s) 9, 359, 542, 1148
MaeII ACGT 2 cut(s) 721, 1170
MaeIII GTNAC 4 cut(s) 400, 1007, 1232, 1248
MalI GATC 4 cut(s) 138, 503, 1213, 1339
MboI GATC 4 cut(s) 136, 501, 1211, 1337
MboII GAAGA 4 cut(s) 373, 524, 857, 1297
MflI RGATCY 3 cut(s) 501, 1211, 1337
MhlI GDGCHC 6 cut(s) 74, 787, 911, 959, 1201, 1474
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 3 cut(s) 415, 645, 1057
MluNI TGGCCA 1 cut(s) 1167
MmeI TCCRAC 3 cut(s) 289, 780, 1315
MnlI CCTC 7 cut(s) 125, 336, 564, 769, 774, 823, 1378
Mox20I TGGCCA 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 2 cut(s) 824, 975
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 2 cut(s) 78, 1454
MspI CCGG 3 cut(s) 258, 322, 329
MspR9I CCNGG 2 cut(s) 322, 1194
MvaI CCWGG 1 cut(s) 1194
MwoI GCNNNNNNNGC 8 cut(s) 78, 279, 364, 368, 547, 760, 1478, 1484
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 939
NdeI CATATG 3 cut(s) 59, 1052, 1293
NdeII GATC 4 cut(s) 136, 501, 1211, 1337
NheI GCTAGC 2 cut(s) 358, 541
NlaIII CATG 6 cut(s) 355, 371, 454, 943, 1138, 1410
NlaIV GGNNCC 4 cut(s) 82, 181, 436, 1300
NmuCI GTSAC 2 cut(s) 400, 1248
NspI RCATGY 2 cut(s) 371, 1410
PaeI GCATGC 1 cut(s) 371
PagI TCATGA 1 cut(s) 450
PfeI GAWTC 4 cut(s) 19, 193, 591, 889
PflFI GACNNNGTC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 1171
PmlI CACGTG 1 cut(s) 1171
Ppu21I YACGTR 2 cut(s) 722, 1171
PsiI TTATAA 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 1192
PspCI CACGTG 1 cut(s) 1171
PspGI CCWGG 1 cut(s) 1192
PspN4I GGNNCC 4 cut(s) 82, 181, 436, 1300
PspPI GGNCC 4 cut(s) 30, 236, 297, 1299
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 3 cut(s) 501, 1211, 1337
PsyI GACNNNGTC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 3 cut(s) 512, 741, 1030
RsaNI GTAC 3 cut(s) 511, 740, 1029
SaqAI TTAA 2 cut(s) 824, 975
Sau3AI GATC 4 cut(s) 136, 501, 1211, 1337
Sau96I GGNCC 4 cut(s) 30, 236, 297, 1299
ScaI AGTACT 1 cut(s) 1030
ScrFI CCNGG 2 cut(s) 322, 1194
SduI GDGCHC 6 cut(s) 74, 787, 911, 959, 1201, 1474
SfaNI GCATC 6 cut(s) 456, 528, 634, 1114, 1160, 1397
SfcI CTRYAG 1 cut(s) 1513
SinI GGWCC 3 cut(s) 30, 236, 1299
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SphI GCATGC 1 cut(s) 371
Sse9I AATT 3 cut(s) 415, 645, 1057
SsiI CCGC 8 cut(s) 78, 300, 362, 398, 595, 662, 871, 1537
SspMI CTAG 4 cut(s) 9, 359, 542, 1148
StyD4I CCNGG 2 cut(s) 320, 1192
StyI CCWWGG 3 cut(s) 239, 939, 1482
TaaI ACNGT 7 cut(s) 30, 49, 69, 157, 188, 839, 1238
TaiI ACGT 2 cut(s) 724, 1173
TaqI TCGA 2 cut(s) 150, 641
TasI AATT 3 cut(s) 415, 645, 1057
TatI WGTACW 2 cut(s) 739, 1028
TauI GCSGC 4 cut(s) 81, 302, 365, 665
TfiI GAWTC 4 cut(s) 19, 193, 591, 889
Tru1I TTAA 2 cut(s) 824, 975
Tru9I TTAA 2 cut(s) 824, 975
TscAI CASTG 6 cut(s) 74, 160, 275, 409, 552, 975
TseFI GTSAC 2 cut(s) 400, 1248
TseI GCWGC 6 cut(s) 550, 622, 751, 1451, 1454, 1478
Tsp45I GTSAC 2 cut(s) 400, 1248
TspDTI ATGAA 4 cut(s) 340, 467, 516, 1123
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 6 cut(s) 74, 160, 275, 409, 552, 975
Tth111I GACNNNGTC 1 cut(s) 28
VneI GTGCAC 2 cut(s) 70, 907
VpaK11BI GGWCC 3 cut(s) 30, 236, 1299
XapI RAATTY 1 cut(s) 1057
XceI RCATGY 2 cut(s) 371, 1410
XmiI GTMKAC 2 cut(s) 44, 102
XspI CTAG 4 cut(s) 9, 359, 542, 1148
ZrmI AGTACT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.