Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001991

Physical Location & Seq

Genomic Coordinates Reverse (-)

2233770 .. 2236659

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTACGAAAAAACTACTTCATATCTTCTGATGCTAGCACTGCTGCCTCCAATAAATACTTTGTTGCTTATGTGGTTTGTGAGAATCCGCAACACGAAGGAAGGAAACGAGAAGCAGCATCTGGATAGTCTCTCGATAATTGCTCTTGTTGTTGCGGCTTACCTTATGTGCATTATACTATTAGAGAACTTTATCACTCTGCCATTAGCCATACGTGTTGTTGGTTTTGTTGTACTTGTATTGCTGCTTGCCTCGCCTCTTTGTGTTGTAATCAGAGCACATCAAGGGGAGTTGGATAGTGTTTCAGAGCCTTTCTTAACTGAGGTTGACCGTTTAGAAGATGGTAATGATAAAAGGAGTTTGCGGTCTGATATACACCTGAATCTATTACAAGCAATGTGCACAATAAACTTCTGGATGTTGTTTATTGCCATGGTATGTGGAATGGGCTCGGGACTTGCAGTGGTTAATAATCTTAGCCAAATAGGACAATCGCTTGGTTACAGAAACTTTGAGATAAGTACTTTGGTTTCTTTGCTGAGCATATGGAATTTCTTTGGTCGTTTGGGAGCTGGATATATATCGGATTGTTTCCTGCATCGGAAAGGATGGGCAAGGCCATTGTTCATGGTCATCACTCTAGCATCTATGAGCATTGGCCACGTGGTGATTGCTTCTGGTATGCCTGGTGCTCTCTATACTGGATCTGTATTGGTGGGTGTGTGTTACGGTTCTCAATGGTCACTAATGCCAACAATCACTTCTGAGATATTTGGTGTGCTACATATGGGGACCATCTTCAATGCCATTACCATTGCCAGTCCTGTTGGATCTTATATCTTTTCTGTGAGAGTGATAGGATATATTTATGACAAGGAGGCATCAGAACCAGAGAATACATGCTTTGGAACTCAATGCTTTATGTTATCATTCCTTATTATGGCAGCTGCTACCCTTTTTGGGGCTCTTGCTGCCTTGGCATTGTTCTTTCGGACGAGAAGTTTCTATAGTCAGGTAATCATCAAAAGATCCTTTCAGGACATAATTATTGTGATTTTGGTTGGTTTTATATCTTTTACAAAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

362

Amino Acids

40.01

Weight (kDa)

7.58

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	4 - 91	4.4e-12	Nodulin-like
NFD4_C	PF23262	133 - 337	2.7e-24	NFD4, C-terminal domain
MFS_1	PF07690	141 - 335	5.7e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18940 AT1G74780 AT2G34350 AT2G34350 AT2G34355 AT2G34355
fragaria_vesca	FvH4_5g15790 FvH4_5g15790 FvH4_5g15790 FvH4_5g15810
malus_domestica	MD00G1132000.v1.1 MD06G1185400.v1.1 MD06G1185500.v1.1 MD06G1185600.v1.1 MD14G1191700.v1.1
prunus_persica	Prupe.5G184300_v2.0.a1 Prupe.5G184300_v2.0.a1
pyrus_communis	pycom06g16490 pycom06g16500 pycom14g15940
rosa_chinensis	RchiOBHm_Chr7g0180321 RchiOBHm_Chr7g0180331
rosa_laevigata	RLG00000005276 RLG00000005277
rosa_multiflora	Rmu_sc0003526.1_g000013 Rmu_sc0003526.1_g000014 Rmu_sc0031066.1_g000002 Rmu_ssc0000099.1_g000002 Rmu_ssc0000099.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272980 Rroxscaffold_3G00272990
rosa_rugosa	Rorug06G0432000 Rorug06G0432100 Rorug06G0432200 Rorug06G0432300
rosa_samantha	Rh7AG032600 Rh7AG032700 Rh7BG032600 Rh7BG032700 Rh7CG034500 Rh7CG034600 Rh7DG033200 Rh7DG033300
rosa_wichuraiana	Rw7G002720 Rw7G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	88, 155, 364
AclWI	GGATC	3 cut(s)	712, 838, 1023
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	550
AcvI	CACGTG	1 cut(s)	664
AdeI	CACNNNGTG	1 cut(s)	667
AfaI	GTAC	3 cut(s)	5, 234, 523
AfiI	CCNNNNNNNGG	3 cut(s)	940, 960, 961
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	745, 777
AluBI	AGCT	2 cut(s)	572, 947
AluI	AGCT	2 cut(s)	572, 947
Alw21I	GWGCWC	3 cut(s)	280, 404, 694
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	400
AlwI	GGATC	3 cut(s)	712, 838, 1023
AlwNI	CAGNNNCTG	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	2 cut(s)	617, 658
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	6 cut(s)	43, 115, 244, 944, 947, 971
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	679
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	792
BaeGI	GKGCMC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	660
BanII	GRGCYC	2 cut(s)	452, 967
BbrPI	CACGTG	1 cut(s)	664
Bbv12I	GWGCWC	3 cut(s)	280, 404, 694
BbvI	GCAGC	6 cut(s)	30, 127, 231, 934, 956, 958
BccI	CCATC	3 cut(s)	335, 603, 803
BciT130I	CCWGG	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	35, 641
BfmI	CTRYAG	1 cut(s)	1006
BisI	GCNGC	7 cut(s)	44, 116, 156, 245, 945, 948, 972
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	7 cut(s)	45, 117, 157, 246, 946, 949, 973
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	792
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	5 cut(s)	21, 127, 607, 653, 890
BmtI	GCTAGC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	539
BsaAI	YACGTR	2 cut(s)	215, 664
BsaBI	GATNNNNATC	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	432, 975
Bsc4I	CCNNNNNNNGG	3 cut(s)	940, 960, 961
Bse1I	ACTGG	2 cut(s)	706, 819
Bse3DI	GCAATG	2 cut(s)	402, 813
Bse8I	GATNNNNATC	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	432, 975
BseGI	GGATG	2 cut(s)	423, 614
BseJI	GATNNNNATC	1 cut(s)	580
BseLI	CCNNNNNNNGG	3 cut(s)	940, 960, 961
BseMI	GCAATG	2 cut(s)	402, 813
BseMII	CTCAG	3 cut(s)	312, 530, 756
BseNI	ACTGG	2 cut(s)	706, 819
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	6 cut(s)	30, 127, 231, 934, 956, 958
BshFI	GGCC	2 cut(s)	619, 660
BsiHKAI	GWGCWC	3 cut(s)	280, 404, 694
BsiHKCI	CYCGRG	1 cut(s)	451
BslFI	GGGAC	2 cut(s)	468, 805
BslI	CCNNNNNNNGG	3 cut(s)	940, 960, 961
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	468, 805
BsnI	GGCC	2 cut(s)	619, 660
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	5 cut(s)	280, 404, 452, 694, 967
Bsp143I	GATC	3 cut(s)	704, 830, 1028
Bsp1720I	GCTNAGC	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	3 cut(s)	88, 155, 364
BspANI	GGCC	2 cut(s)	619, 660
BspCNI	CTCAG	3 cut(s)	313, 531, 757
BspLI	GGNNCC	1 cut(s)	793
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	3 cut(s)	712, 838, 1023
BsrDI	GCAATG	2 cut(s)	402, 813
BsrI	ACTGG	2 cut(s)	706, 819
BssECI	CCNNGG	2 cut(s)	432, 975
BssMI	GATC	3 cut(s)	704, 830, 1028
BssT1I	CCWWGG	2 cut(s)	432, 975
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	2 cut(s)	332, 731
BstBAI	YACGTR	2 cut(s)	215, 664
BstC8I	GCNNGC	2 cut(s)	36, 249
BstDEI	CTNAG	4 cut(s)	321, 476, 539, 765
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	423, 614
BstKTI	GATC	3 cut(s)	707, 833, 1031
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	704, 830, 1028
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 253, 971, 977
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	903
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	1006
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	6 cut(s)	30, 127, 231, 934, 956, 958
BstX2I	RGATCY	3 cut(s)	704, 830, 1028
BstYI	RGATCY	3 cut(s)	704, 830, 1028
BsuRI	GGCC	2 cut(s)	619, 660
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	423, 614
BtsI	GCAGTG	2 cut(s)	38, 468
BtsIMutI	CAGTG	2 cut(s)	38, 468
Cac8I	GCNNGC	2 cut(s)	36, 249
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	792
Csp6I	GTAC	3 cut(s)	4, 233, 522
CviAII	CATG	3 cut(s)	433, 628, 900
CviQI	GTAC	3 cut(s)	4, 233, 522
DdeI	CTNAG	4 cut(s)	321, 476, 539, 765
DpnI	GATC	3 cut(s)	706, 832, 1030
DpnII	GATC	3 cut(s)	704, 830, 1028
DraIII	CACNNNGTG	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	658
Eco130I	CCWWGG	2 cut(s)	432, 975
Eco24I	GRGCYC	2 cut(s)	452, 967
Eco47I	GGWCC	1 cut(s)	792
Eco72I	CACGTG	1 cut(s)	664
Eco88I	CYCGRG	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	432, 975
EcoT38I	GRGCYC	2 cut(s)	452, 967
ErhI	CCWWGG	2 cut(s)	432, 975
FaeI	CATG	3 cut(s)	436, 631, 903
FaqI	GGGAC	2 cut(s)	468, 805
FatI	CATG	3 cut(s)	432, 627, 899
FauNDI	CATATG	2 cut(s)	545, 786
Fnu4HI	GCNGC	7 cut(s)	44, 116, 156, 245, 945, 948, 972
FokI	GGATG	2 cut(s)	430, 621
FriOI	GRGCYC	2 cut(s)	452, 967
Fsp4HI	GCNGC	7 cut(s)	44, 116, 156, 245, 945, 948, 972
FspBI	CTAG	2 cut(s)	35, 641
GluI	GCNGC	7 cut(s)	44, 116, 156, 245, 945, 948, 972
HaeIII	GGCC	2 cut(s)	619, 660
Hin1II	CATG	3 cut(s)	436, 631, 903
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	84, 382
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	2 cut(s)	328, 402
Hpy188I	TCNGA	9 cut(s)	30, 275, 307, 370, 586, 603, 766, 886, 993
Hpy188III	TCNNGA	5 cut(s)	122, 133, 415, 453, 1037
Hpy8I	GTNNAC	2 cut(s)	328, 402
HpyAV	CCTTC	2 cut(s)	91, 95
HpyCH4III	ACNGT	2 cut(s)	332, 731
HpyCH4IV	ACGT	2 cut(s)	214, 663
HpyCH4V	TGCA	4 cut(s)	171, 402, 461, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 253, 971, 977
HpyF3I	CTNAG	4 cut(s)	321, 476, 539, 765
HpySE526I	ACGT	2 cut(s)	214, 663
Hsp92II	CATG	3 cut(s)	436, 631, 903
Kzo9I	GATC	3 cut(s)	704, 830, 1028
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	6 cut(s)	30, 127, 231, 934, 956, 958
LweI	GCATC	5 cut(s)	21, 127, 607, 653, 890
MaeI	CTAG	2 cut(s)	35, 641
MaeII	ACGT	2 cut(s)	214, 663
MaeIII	GTNAC	3 cut(s)	500, 725, 741
MalI	GATC	3 cut(s)	706, 832, 1030
MboI	GATC	3 cut(s)	704, 830, 1028
MboII	GAAGA	3 cut(s)	17, 350, 790
MflI	RGATCY	3 cut(s)	704, 830, 1028
MhlI	GDGCHC	5 cut(s)	280, 404, 452, 694, 967
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	138, 550, 1044
MluNI	TGGCCA	1 cut(s)	660
MmeI	TCCRAC	2 cut(s)	273, 808
MnlI	CCTC	5 cut(s)	57, 262, 267, 316, 871
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	2 cut(s)	317, 468
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	947
MspR9I	CCNGG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	4 cut(s)	40, 253, 971, 977
NcoI	CCATGG	1 cut(s)	432
NdeI	CATATG	2 cut(s)	545, 786
NdeII	GATC	3 cut(s)	704, 830, 1028
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	436, 631, 903
NlaIV	GGNNCC	1 cut(s)	793
NmuCI	GTSAC	1 cut(s)	741
NspI	RCATGY	1 cut(s)	903
PfeI	GAWTC	2 cut(s)	84, 382
PkrI	GCNGC	7 cut(s)	45, 117, 157, 246, 946, 949, 973
PmaCI	CACGTG	1 cut(s)	664
PmlI	CACGTG	1 cut(s)	664
Ppu21I	YACGTR	2 cut(s)	215, 664
Psp6I	CCWGG	1 cut(s)	685
PspCI	CACGTG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	1 cut(s)	793
PspPI	GGNCC	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	121
PsuI	RGATCY	3 cut(s)	704, 830, 1028
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	3 cut(s)	5, 234, 523
RsaNI	GTAC	3 cut(s)	4, 233, 522
SaqAI	TTAA	2 cut(s)	317, 468
SatI	GCNGC	7 cut(s)	44, 116, 156, 245, 945, 948, 972
Sau3AI	GATC	3 cut(s)	704, 830, 1028
Sau96I	GGNCC	1 cut(s)	792
ScaI	AGTACT	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	5 cut(s)	280, 404, 452, 694, 967
SetI	ASST	8 cut(s)	165, 217, 327, 381, 574, 666, 949, 1017
SfaNI	GCATC	5 cut(s)	21, 127, 607, 653, 890
SfcI	CTRYAG	1 cut(s)	1006
SinI	GGWCC	1 cut(s)	792
Sse9I	AATT	3 cut(s)	138, 550, 1044
SsiI	CCGC	3 cut(s)	88, 155, 364
SspMI	CTAG	2 cut(s)	35, 641
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	2 cut(s)	432, 975
TaaI	ACNGT	2 cut(s)	332, 731
TaiI	ACGT	2 cut(s)	217, 666
TaqI	TCGA	1 cut(s)	134
TasI	AATT	3 cut(s)	138, 550, 1044
TatI	WGTACW	2 cut(s)	232, 521
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	84, 382
Tru1I	TTAA	2 cut(s)	317, 468
Tru9I	TTAA	2 cut(s)	317, 468
TscAI	CASTG	2 cut(s)	45, 468
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	6 cut(s)	43, 115, 244, 944, 947, 971
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	2 cut(s)	9, 616
TspRI	CASTG	2 cut(s)	45, 468
VneI	GTGCAC	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	792
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	903
XspI	CTAG	2 cut(s)	35, 641
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.