Nodulin-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18940 AT1G74780 AT2G34350 AT2G34350 AT2G34355 AT2G34355 |
| fragaria_vesca | FvH4_5g15790 FvH4_5g15790 FvH4_5g15790 FvH4_5g15810 |
| malus_domestica | MD00G1132000.v1.1 MD06G1185400.v1.1 MD06G1185500.v1.1 MD06G1185600.v1.1 MD14G1191700.v1.1 |
| prunus_persica | Prupe.5G184300_v2.0.a1 Prupe.5G184300_v2.0.a1 |
| pyrus_communis | pycom06g16490 pycom06g16500 pycom14g15940 |
| rosa_chinensis | RchiOBHm_Chr7g0180321 RchiOBHm_Chr7g0180331 |
| rosa_laevigata | RLG00000005276 RLG00000005277 |
| rosa_multiflora | Rmu_sc0003526.1_g000013 Rmu_sc0003526.1_g000014 Rmu_sc0031066.1_g000002 Rmu_ssc0000099.1_g000002 Rmu_ssc0000099.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00272980 Rroxscaffold_3G00272990 |
| rosa_rugosa | Rorug06G0432000 Rorug06G0432100 Rorug06G0432200 Rorug06G0432300 |
| rosa_samantha | Rh7AG032600 Rh7AG032700 Rh7BG032600 Rh7BG032700 Rh7CG034500 Rh7CG034600 Rh7DG033200 Rh7DG033300 |
| rosa_wichuraiana | Rw7G002720 Rw7G002730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 887 |
| Acc65I | GGTACC | 2 cut(s) | 980, 1322 |
| AccB1I | GGYRCC | 4 cut(s) | 182, 980, 1191, 1322 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 63 |
| AccBSI | CCGCTC | 1 cut(s) | 340 |
| AccII | CGCG | 2 cut(s) | 191, 240 |
| AccIII | TCCGGA | 1 cut(s) | 203 |
| AcoI | YGGCCR | 3 cut(s) | 54, 341, 990 |
| AcsI | RAATTY | 1 cut(s) | 433 |
| AcuI | CTGAAG | 2 cut(s) | 82, 1507 |
| AcvI | CACGTG | 1 cut(s) | 271 |
| AcyI | GRCGYC | 3 cut(s) | 183, 195, 884 |
| AfaI | GTAC | 9 cut(s) | 267, 302, 314, 429, 507, 647, 847, 982, 1324 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 63, 249, 250, 327, 1474 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 3 cut(s) | 172, 403, 1333 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 18, 160 |
| AhlI | ACTAGT | 2 cut(s) | 410, 577 |
| AjnI | CCWGG | 1 cut(s) | 1216 |
| AleI | CACNNNNGTG | 1 cut(s) | 1040 |
| AluBI | AGCT | 7 cut(s) | 543, 620, 629, 809, 933, 1103, 1412 |
| AluI | AGCT | 7 cut(s) | 543, 620, 629, 809, 933, 1103, 1412 |
| Alw21I | GWGCWC | 1 cut(s) | 935 |
| Alw26I | GTCTC | 3 cut(s) | 586, 875, 1117 |
| Aor13HI | TCCGGA | 1 cut(s) | 203 |
| AoxI | GGCC | 8 cut(s) | 54, 254, 341, 561, 990, 1018, 1148, 1476 |
| ApeKI | GCWGC | 2 cut(s) | 683, 763 |
| ApoI | RAATTY | 1 cut(s) | 433 |
| Asp718I | GGTACC | 2 cut(s) | 980, 1322 |
| AspLEI | GCGC | 4 cut(s) | 86, 185, 229, 242 |
| AspS9I | GGNCC | 2 cut(s) | 254, 453 |
| AsuHPI | GGTGA | 3 cut(s) | 361, 777, 914 |
| AvaII | GGWCC | 1 cut(s) | 453 |
| BaeGI | GKGCMC | 1 cut(s) | 1194 |
| BalI | TGGCCA | 1 cut(s) | 992 |
| BanI | GGYRCC | 4 cut(s) | 182, 980, 1191, 1322 |
| BanII | GRGCYC | 2 cut(s) | 385, 935 |
| BbrPI | CACGTG | 1 cut(s) | 271 |
| BbsI | GAAGAC | 1 cut(s) | 160 |
| Bbv12I | GWGCWC | 1 cut(s) | 935 |
| BbvI | GCAGC | 2 cut(s) | 670, 750 |
| BccI | CCATC | 4 cut(s) | 688, 893, 1295, 1418 |
| BceAI | ACGGC | 6 cut(s) | 60, 66, 206, 305, 848, 870 |
| BciT130I | CCWGG | 1 cut(s) | 1218 |
| BclI | TGATCA | 1 cut(s) | 1470 |
| BcoDI | GTCTC | 3 cut(s) | 586, 875, 1117 |
| BcuI | ACTAGT | 2 cut(s) | 410, 577 |
| BfaI | CTAG | 4 cut(s) | 411, 578, 741, 1582 |
| BfmI | CTRYAG | 2 cut(s) | 888, 1435 |
| BfoI | RGCGCY | 2 cut(s) | 186, 230 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 323, 1017 |
| BglII | AGATCT | 1 cut(s) | 1299 |
| BisI | GCNGC | 9 cut(s) | 54, 82, 238, 318, 341, 344, 684, 764, 1568 |
| BlsI | GCNGC | 9 cut(s) | 55, 83, 239, 319, 342, 345, 685, 765, 1569 |
| BmcAI | AGTACT | 2 cut(s) | 647, 847 |
| Bme1390I | CCNGG | 1 cut(s) | 1218 |
| Bme18I | GGWCC | 1 cut(s) | 453 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 18, 160 |
| BmgT120I | GGNCC | 2 cut(s) | 254, 453 |
| BmiI | GGNNCC | 7 cut(s) | 184, 255, 454, 982, 1193, 1324, 1429 |
| BmrFI | CCNGG | 1 cut(s) | 1218 |
| BmsI | GCATC | 5 cut(s) | 95, 111, 853, 1260, 1579 |
| BoxI | GACNNNNGTC | 1 cut(s) | 413 |
| BpiI | GAAGAC | 1 cut(s) | 160 |
| BpmI | CTGGAG | 1 cut(s) | 1437 |
| Bpu10I | CCTNAGC | 1 cut(s) | 26 |
| BpuEI | CTTGAG | 2 cut(s) | 104, 1155 |
| BsaAI | YACGTR | 1 cut(s) | 271 |
| BsaHI | GRCGYC | 3 cut(s) | 183, 195, 884 |
| BsaJI | CCNNGG | 4 cut(s) | 130, 222, 257, 321 |
| BsaWI | WCCGGW | 1 cut(s) | 203 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 63, 249, 250, 327, 1474 |
| Bse118I | RCCGGY | 2 cut(s) | 346, 983 |
| Bse1I | ACTGG | 4 cut(s) | 286, 427, 507, 1021 |
| Bse3DI | GCAATG | 3 cut(s) | 678, 758, 969 |
| BseAI | TCCGGA | 1 cut(s) | 203 |
| BseBI | CCWGG | 1 cut(s) | 1218 |
| BseDI | CCNNGG | 4 cut(s) | 130, 222, 257, 321 |
| BseGI | GGATG | 1 cut(s) | 86 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 63, 249, 250, 327, 1474 |
| BseMI | GCAATG | 3 cut(s) | 678, 758, 969 |
| BseMII | CTCAG | 7 cut(s) | 17, 404, 701, 824, 1128, 1287, 1389 |
| BseNI | ACTGG | 4 cut(s) | 286, 427, 507, 1021 |
| BseRI | GAGGAG | 3 cut(s) | 100, 200, 1420 |
| BseSI | GKGCMC | 1 cut(s) | 1194 |
| BseX3I | CGGCCG | 1 cut(s) | 341 |
| BseXI | GCAGC | 2 cut(s) | 670, 750 |
| BseYI | CCCAGC | 3 cut(s) | 539, 1103, 1140 |
| Bsh1236I | CGCG | 2 cut(s) | 191, 240 |
| Bsh1285I | CGRYCG | 1 cut(s) | 344 |
| BshFI | GGCC | 8 cut(s) | 56, 256, 343, 563, 992, 1020, 1150, 1478 |
| BshNI | GGYRCC | 4 cut(s) | 182, 980, 1191, 1322 |
| BsiEI | CGRYCG | 1 cut(s) | 344 |
| BsiHKAI | GWGCWC | 1 cut(s) | 935 |
| BsiSI | CCGG | 3 cut(s) | 204, 347, 984 |
| BslFI | GGGAC | 2 cut(s) | 466, 498 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 63, 249, 250, 327, 1474 |
| BsmAI | GTCTC | 3 cut(s) | 586, 875, 1117 |
| BsmBI | CGTCTC | 1 cut(s) | 875 |
| BsmFI | GGGAC | 2 cut(s) | 466, 498 |
| BsmI | GAATGC | 1 cut(s) | 1487 |
| BsnI | GGCC | 8 cut(s) | 56, 256, 343, 563, 992, 1020, 1150, 1478 |
| Bsp1286I | GDGCHC | 3 cut(s) | 385, 935, 1194 |
| Bsp13I | TCCGGA | 1 cut(s) | 203 |
| Bsp143I | GATC | 2 cut(s) | 1299, 1470 |
| BspANI | GGCC | 8 cut(s) | 56, 256, 343, 563, 992, 1020, 1150, 1478 |
| BspCNI | CTCAG | 7 cut(s) | 18, 403, 702, 823, 1127, 1288, 1388 |
| BspEI | TCCGGA | 1 cut(s) | 203 |
| BspFNI | CGCG | 2 cut(s) | 191, 240 |
| BspLI | GGNNCC | 7 cut(s) | 184, 255, 454, 982, 1193, 1324, 1429 |
| BspMAI | CTGCAG | 1 cut(s) | 1439 |
| BspT107I | GGYRCC | 4 cut(s) | 182, 980, 1191, 1322 |
| BsrBI | CCGCTC | 1 cut(s) | 340 |
| BsrDI | GCAATG | 3 cut(s) | 678, 758, 969 |
| BsrFI | RCCGGY | 2 cut(s) | 346, 983 |
| BsrI | ACTGG | 4 cut(s) | 286, 427, 507, 1021 |
| BssAI | RCCGGY | 2 cut(s) | 346, 983 |
| BssECI | CCNNGG | 4 cut(s) | 130, 222, 257, 321 |
| BssMI | GATC | 2 cut(s) | 1299, 1470 |
| BssNI | GRCGYC | 3 cut(s) | 183, 195, 884 |
| BssT1I | CCWWGG | 2 cut(s) | 130, 257 |
| Bst2UI | CCWGG | 1 cut(s) | 1218 |
| Bst4CI | ACNGT | 3 cut(s) | 160, 355, 1042 |
| BstACI | GRCGYC | 3 cut(s) | 183, 195, 884 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1449 |
| BstBAI | YACGTR | 1 cut(s) | 271 |
| BstC8I | GCNNGC | 3 cut(s) | 58, 193, 1351 |
| BstDEI | CTNAG | 8 cut(s) | 26, 390, 488, 710, 810, 1114, 1296, 1375 |
| BstDSI | CCRYGG | 2 cut(s) | 222, 321 |
| BstF5I | GGATG | 1 cut(s) | 86 |
| BstFNI | CGCG | 2 cut(s) | 191, 240 |
| BstH2I | RGCGCY | 2 cut(s) | 186, 230 |
| BstHHI | GCGC | 4 cut(s) | 86, 185, 229, 242 |
| BstKTI | GATC | 2 cut(s) | 1302, 1473 |
| BstMAI | GTCTC | 3 cut(s) | 586, 875, 1117 |
| BstMBI | GATC | 2 cut(s) | 1299, 1470 |
| BstMCI | CGRYCG | 1 cut(s) | 344 |
| BstNI | CCWGG | 1 cut(s) | 1218 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 413 |
| BstSCI | CCNGG | 1 cut(s) | 1216 |
| BstSFI | CTRYAG | 2 cut(s) | 888, 1435 |
| BstSLI | GKGCMC | 1 cut(s) | 1194 |
| BstUI | CGCG | 2 cut(s) | 191, 240 |
| BstV1I | GCAGC | 2 cut(s) | 670, 750 |
| BstV2I | GAAGAC | 1 cut(s) | 160 |
| BstX2I | RGATCY | 1 cut(s) | 1299 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1028 |
| BstYI | RGATCY | 1 cut(s) | 1299 |
| BstZI | CGGCCG | 1 cut(s) | 341 |
| BsuRI | GGCC | 8 cut(s) | 56, 256, 343, 563, 992, 1020, 1150, 1478 |
| BtgI | CCRYGG | 2 cut(s) | 222, 321 |
| BtsCI | GGATG | 1 cut(s) | 86 |
| BtsI | GCAGTG | 1 cut(s) | 1444 |
| BtsIMutI | CAGTG | 6 cut(s) | 77, 293, 420, 1047, 1383, 1444 |
| Cac8I | GCNNGC | 3 cut(s) | 58, 193, 1351 |
| CciNI | GCGGCCGC | 1 cut(s) | 341 |
| CfoI | GCGC | 4 cut(s) | 86, 185, 229, 242 |
| Cfr10I | RCCGGY | 2 cut(s) | 346, 983 |
| Cfr13I | GGNCC | 2 cut(s) | 254, 453 |
| CseI | GACGC | 1 cut(s) | 184 |
| Csp6I | GTAC | 9 cut(s) | 266, 301, 313, 428, 506, 646, 846, 981, 1323 |
| CviAII | CATG | 6 cut(s) | 31, 370, 595, 817, 1006, 1474 |
| CviQI | GTAC | 9 cut(s) | 266, 301, 313, 428, 506, 646, 846, 981, 1323 |
| DdeI | CTNAG | 8 cut(s) | 26, 390, 488, 710, 810, 1114, 1296, 1375 |
| DinI | GGCGCC | 1 cut(s) | 184 |
| DpnI | GATC | 2 cut(s) | 1301, 1472 |
| DpnII | GATC | 2 cut(s) | 1299, 1470 |
| DriI | GACNNNNNGTC | 2 cut(s) | 18, 160 |
| EaeI | YGGCCR | 3 cut(s) | 54, 341, 990 |
| EagI | CGGCCG | 1 cut(s) | 341 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 18, 160 |
| EciI | GGCGGA | 2 cut(s) | 103, 208 |
| Ecl136II | GAGCTC | 1 cut(s) | 933 |
| EclXI | CGGCCG | 1 cut(s) | 341 |
| Eco130I | CCWWGG | 2 cut(s) | 130, 257 |
| Eco24I | GRGCYC | 2 cut(s) | 385, 935 |
| Eco47I | GGWCC | 1 cut(s) | 453 |
| Eco52I | CGGCCG | 1 cut(s) | 341 |
| Eco53kI | GAGCTC | 1 cut(s) | 933 |
| Eco57I | CTGAAG | 2 cut(s) | 82, 1507 |
| Eco72I | CACGTG | 1 cut(s) | 271 |
| EcoICRI | GAGCTC | 1 cut(s) | 933 |
| EcoO109I | RGGNCCY | 1 cut(s) | 254 |
| EcoRII | CCWGG | 1 cut(s) | 1216 |
| EcoT14I | CCWWGG | 2 cut(s) | 130, 257 |
| EcoT38I | GRGCYC | 2 cut(s) | 385, 935 |
| EgeI | GGCGCC | 1 cut(s) | 184 |
| EheI | GGCGCC | 1 cut(s) | 184 |
| ErhI | CCWWGG | 2 cut(s) | 130, 257 |
| Esp3I | CGTCTC | 1 cut(s) | 875 |
| FaeI | CATG | 6 cut(s) | 34, 373, 598, 820, 1009, 1477 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 632, 664 |
| FaqI | GGGAC | 2 cut(s) | 466, 498 |
| FatI | CATG | 6 cut(s) | 30, 369, 594, 816, 1005, 1473 |
| FauI | CCCGC | 3 cut(s) | 184, 268, 289 |
| FauNDI | CATATG | 1 cut(s) | 62 |
| FbaI | TGATCA | 1 cut(s) | 1470 |
| Fnu4HI | GCNGC | 9 cut(s) | 54, 82, 238, 318, 341, 344, 684, 764, 1568 |
| FokI | GGATG | 1 cut(s) | 73 |
| FriOI | GRGCYC | 2 cut(s) | 385, 935 |
| Fsp4HI | GCNGC | 9 cut(s) | 54, 82, 238, 318, 341, 344, 684, 764, 1568 |
| FspBI | CTAG | 4 cut(s) | 411, 578, 741, 1582 |
| GlaI | GCGC | 4 cut(s) | 85, 184, 228, 241 |
| GluI | GCNGC | 9 cut(s) | 54, 82, 238, 318, 341, 344, 684, 764, 1568 |
| GsaI | CCCAGC | 3 cut(s) | 543, 1107, 1144 |
| GsuI | CTGGAG | 1 cut(s) | 1437 |
| HaeII | RGCGCY | 2 cut(s) | 186, 230 |
| HaeIII | GGCC | 8 cut(s) | 56, 256, 343, 563, 992, 1020, 1150, 1478 |
| HapII | CCGG | 3 cut(s) | 204, 347, 984 |
| HgaI | GACGC | 1 cut(s) | 184 |
| HhaI | GCGC | 4 cut(s) | 86, 185, 229, 242 |
| Hin1I | GRCGYC | 3 cut(s) | 183, 195, 884 |
| Hin1II | CATG | 6 cut(s) | 34, 373, 598, 820, 1009, 1477 |
| Hin6I | GCGC | 4 cut(s) | 84, 183, 227, 240 |
| HinP1I | GCGC | 4 cut(s) | 84, 183, 227, 240 |
| HindIII | AAGCTT | 2 cut(s) | 618, 1410 |
| HinfI | GANTC | 8 cut(s) | 19, 67, 207, 609, 772, 795, 821, 913 |
| HpaII | CCGG | 3 cut(s) | 204, 347, 984 |
| HphI | GGTGA | 3 cut(s) | 361, 777, 914 |
| Hpy166II | GTNNAC | 2 cut(s) | 42, 268 |
| Hpy188I | TCNGA | 7 cut(s) | 393, 442, 693, 771, 1117, 1297, 1526 |
| Hpy188III | TCNNGA | 4 cut(s) | 204, 1209, 1416, 1468 |
| Hpy8I | GTNNAC | 2 cut(s) | 42, 268 |
| Hpy99I | CGWCG | 4 cut(s) | 10, 13, 16, 52 |
| HpyAV | CCTTC | 3 cut(s) | 106, 406, 466 |
| HpyCH4III | ACNGT | 3 cut(s) | 160, 355, 1042 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 884 |
| HpyCH4V | TGCA | 4 cut(s) | 528, 962, 1437, 1487 |
| HpyF3I | CTNAG | 8 cut(s) | 26, 390, 488, 710, 810, 1114, 1296, 1375 |
| HpySE526I | ACGT | 2 cut(s) | 270, 884 |
| Hsp92I | GRCGYC | 3 cut(s) | 183, 195, 884 |
| Hsp92II | CATG | 6 cut(s) | 34, 373, 598, 820, 1009, 1477 |
| HspAI | GCGC | 4 cut(s) | 84, 183, 227, 240 |
| KasI | GGCGCC | 1 cut(s) | 182 |
| Kpn2I | TCCGGA | 1 cut(s) | 203 |
| KpnI | GGTACC | 2 cut(s) | 984, 1326 |
| Ksp22I | TGATCA | 1 cut(s) | 1470 |
| Kzo9I | GATC | 2 cut(s) | 1299, 1470 |
| LmnI | GCTCC | 4 cut(s) | 337, 494, 1100, 1433 |
| Lsp1109I | GCAGC | 2 cut(s) | 670, 750 |
| LweI | GCATC | 5 cut(s) | 95, 111, 853, 1260, 1579 |
| MaeI | CTAG | 4 cut(s) | 411, 578, 741, 1582 |
| MaeII | ACGT | 2 cut(s) | 270, 884 |
| MaeIII | GTNAC | 7 cut(s) | 349, 418, 697, 1023, 1031, 1272, 1309 |
| MalI | GATC | 2 cut(s) | 1301, 1472 |
| MbiI | CCGCTC | 1 cut(s) | 340 |
| MboI | GATC | 2 cut(s) | 1299, 1470 |
| MboII | GAAGA | 6 cut(s) | 160, 367, 391, 917, 1513, 1565 |
| MfeI | CAATTG | 1 cut(s) | 1338 |
| MflI | RGATCY | 1 cut(s) | 1299 |
| MhlI | GDGCHC | 3 cut(s) | 385, 935, 1194 |
| MlsI | TGGCCA | 1 cut(s) | 992 |
| MluCI | AATT | 6 cut(s) | 433, 509, 652, 940, 1013, 1338 |
| MluNI | TGGCCA | 1 cut(s) | 992 |
| Mly113I | GGCGCC | 1 cut(s) | 183 |
| MlyI | GAGTC | 4 cut(s) | 28, 201, 830, 907 |
| MmeI | TCCRAC | 1 cut(s) | 465 |
| Mox20I | TGGCCA | 1 cut(s) | 992 |
| MroI | TCCGGA | 1 cut(s) | 203 |
| MscI | TGGCCA | 1 cut(s) | 992 |
| MseI | TTAA | 4 cut(s) | 650, 939, 1157, 1556 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1040 |
| Msp20I | TGGCCA | 1 cut(s) | 992 |
| MspI | CCGG | 3 cut(s) | 204, 347, 984 |
| MspR9I | CCNGG | 1 cut(s) | 1218 |
| MunI | CAATTG | 1 cut(s) | 1338 |
| Mva1269I | GAATGC | 1 cut(s) | 1487 |
| MvaI | CCWGG | 1 cut(s) | 1218 |
| MvnI | CGCG | 2 cut(s) | 191, 240 |
| NarI | GGCGCC | 1 cut(s) | 183 |
| NdeI | CATATG | 1 cut(s) | 62 |
| NdeII | GATC | 2 cut(s) | 1299, 1470 |
| NlaIII | CATG | 6 cut(s) | 34, 373, 598, 820, 1009, 1477 |
| NlaIV | GGNNCC | 7 cut(s) | 184, 255, 454, 982, 1193, 1324, 1429 |
| NmuCI | GTSAC | 6 cut(s) | 349, 418, 697, 1023, 1272, 1309 |
| NotI | GCGGCCGC | 1 cut(s) | 341 |
| OliI | CACNNNNGTG | 1 cut(s) | 1040 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 241, 423 |
| PctI | GAATGC | 1 cut(s) | 1487 |
| PfeI | GAWTC | 4 cut(s) | 67, 609, 772, 795 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 63 |
| PfoI | TCCNGGA | 1 cut(s) | 1216 |
| PkrI | GCNGC | 9 cut(s) | 55, 83, 239, 319, 342, 345, 685, 765, 1569 |
| PleI | GAGTC | 4 cut(s) | 27, 201, 829, 907 |
| PluTI | GGCGCC | 1 cut(s) | 186 |
| PmaCI | CACGTG | 1 cut(s) | 271 |
| PmlI | CACGTG | 1 cut(s) | 271 |
| PpsI | GAGTC | 4 cut(s) | 27, 201, 829, 907 |
| Ppu21I | YACGTR | 1 cut(s) | 271 |
| PshAI | GACNNNNGTC | 1 cut(s) | 413 |
| Psp124BI | GAGCTC | 1 cut(s) | 935 |
| Psp6I | CCWGG | 1 cut(s) | 1216 |
| PspCI | CACGTG | 1 cut(s) | 271 |
| PspFI | CCCAGC | 3 cut(s) | 539, 1103, 1140 |
| PspGI | CCWGG | 1 cut(s) | 1216 |
| PspN4I | GGNNCC | 7 cut(s) | 184, 255, 454, 982, 1193, 1324, 1429 |
| PspPI | GGNCC | 2 cut(s) | 254, 453 |
| PstI | CTGCAG | 1 cut(s) | 1439 |
| PsuI | RGATCY | 1 cut(s) | 1299 |
| RsaI | GTAC | 9 cut(s) | 267, 302, 314, 429, 507, 647, 847, 982, 1324 |
| RsaNI | GTAC | 9 cut(s) | 266, 301, 313, 428, 506, 646, 846, 981, 1323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1040 |
| SacI | GAGCTC | 1 cut(s) | 935 |
| SaqAI | TTAA | 4 cut(s) | 650, 939, 1157, 1556 |
| SatI | GCNGC | 9 cut(s) | 54, 82, 238, 318, 341, 344, 684, 764, 1568 |
| Sau3AI | GATC | 2 cut(s) | 1299, 1470 |
| Sau96I | GGNCC | 2 cut(s) | 254, 453 |
| ScaI | AGTACT | 2 cut(s) | 647, 847 |
| SchI | GAGTC | 4 cut(s) | 28, 201, 830, 907 |
| ScrFI | CCNGG | 1 cut(s) | 1218 |
| SduI | GDGCHC | 3 cut(s) | 385, 935, 1194 |
| SfaNI | GCATC | 5 cut(s) | 95, 111, 853, 1260, 1579 |
| SfcI | CTRYAG | 2 cut(s) | 888, 1435 |
| SfoI | GGCGCC | 1 cut(s) | 184 |
| SgrAI | CRCCGGYG | 1 cut(s) | 346 |
| SinI | GGWCC | 1 cut(s) | 453 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1040 |
| SmlI | CTYRAG | 2 cut(s) | 119, 1170 |
| SmoI | CTYRAG | 2 cut(s) | 119, 1170 |
| SpeI | ACTAGT | 2 cut(s) | 410, 577 |
| Sse9I | AATT | 6 cut(s) | 433, 509, 652, 940, 1013, 1338 |
| SspDI | GGCGCC | 1 cut(s) | 182 |
| SspMI | CTAG | 4 cut(s) | 411, 578, 741, 1582 |
| SstI | GAGCTC | 1 cut(s) | 935 |
| StyD4I | CCNGG | 1 cut(s) | 1216 |
| StyI | CCWWGG | 2 cut(s) | 130, 257 |
| TaaI | ACNGT | 3 cut(s) | 160, 355, 1042 |
| TaiI | ACGT | 2 cut(s) | 273, 887 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 6 cut(s) | 433, 509, 652, 940, 1013, 1338 |
| TatI | WGTACW | 2 cut(s) | 645, 845 |
| TauI | GCSGC | 7 cut(s) | 56, 84, 240, 320, 343, 346, 1570 |
| TfiI | GAWTC | 4 cut(s) | 67, 609, 772, 795 |
| Tru1I | TTAA | 4 cut(s) | 650, 939, 1157, 1556 |
| Tru9I | TTAA | 4 cut(s) | 650, 939, 1157, 1556 |
| TscAI | CASTG | 6 cut(s) | 77, 293, 427, 1047, 1383, 1444 |
| TseFI | GTSAC | 6 cut(s) | 349, 418, 697, 1023, 1272, 1309 |
| TseI | GCWGC | 2 cut(s) | 683, 763 |
| Tsp45I | GTSAC | 6 cut(s) | 349, 418, 697, 1023, 1272, 1309 |
| TspDTI | ATGAA | 6 cut(s) | 358, 485, 583, 630, 805, 1384 |
| TspGWI | ACGGA | 2 cut(s) | 29, 154 |
| TspRI | CASTG | 6 cut(s) | 77, 293, 427, 1047, 1383, 1444 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 63 |
| VpaK11BI | GGWCC | 1 cut(s) | 453 |
| XapI | RAATTY | 1 cut(s) | 433 |
| XspI | CTAG | 4 cut(s) | 411, 578, 741, 1582 |
| ZraI | GACGTC | 1 cut(s) | 885 |
| ZrmI | AGTACT | 2 cut(s) | 647, 847 |