Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001991

Physical Location & Seq

Genomic Coordinates Forward (+)

56718660 .. 56720063

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGGCTGTTGCTTTAGACCGGTCGATGTCTTCCTGCAAGCAAATTAGAATGATGATGGCAAGAAGAAGCTTCCCTTCCTCTGAAAATGTTGCTCCAAGTATGAACTTCCATGGAGGTCTCTTGCAGGCTCCTCATGCTCATCCTCCTCCCTCATTCTCCTCCTTTAACCCCTCCCTCTTCAATCATTATATGCAGCAACAGTTTCTTCAACCACAGCAGCAACCGCCTCTGCTTCCTCTGCCGGTTTCAAAACCACTACACCAGTCTCTCCCATCTCGTACTCGAAGCCTCTCCCGCCCTCCCACCGCCAGAAAGACCAACAACGCCAGAAGCCAATCCCTGACTCCAAAGAAGCCAAAGTCGAAACAATCCAAGAAGGAAGACATTAATTCCATGCCTGCAGACTGCTTCATCATTGCTTCCACCACCCGTTTGGGACCCGATCCAAATGATCTCCCTAGAGATGTCACTAAGGTGTTGTCATCTTCATCGGGTAAGACTACTCTTATTGGTAGTGTTGGAGTTGGAGAACACAAGGACAATTTTTCAAGTTCCATTTTCACTCTCGCACCACCTCCGAGTAGCTTGCCCCTGCCGAGGTTTTCTCTGAAACCGCCGAGGCGATGCAAGGCAGAAGCTGTGGGAGTTGATGCCGGAGCAACGGACAATCTATGCCGTCTTCTACGTCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

232

Amino Acids

25.42

Weight (kDa)

10.53

Isoelectric Point (pI)

73.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18940 AT1G74780 AT2G34350 AT2G34350 AT2G34355 AT2G34355
fragaria_vesca	FvH4_5g15790 FvH4_5g15790 FvH4_5g15790 FvH4_5g15810
malus_domestica	MD00G1132000.v1.1 MD06G1185400.v1.1 MD06G1185500.v1.1 MD06G1185600.v1.1 MD14G1191700.v1.1
prunus_persica	Prupe.5G184300_v2.0.a1 Prupe.5G184300_v2.0.a1
pyrus_communis	pycom06g16490 pycom06g16500 pycom14g15940
rosa_chinensis	RchiOBHm_Chr7g0180321 RchiOBHm_Chr7g0180331
rosa_laevigata	RLG00000005276 RLG00000005277
rosa_multiflora	Rmu_sc0003526.1_g000013 Rmu_sc0003526.1_g000014 Rmu_sc0031066.1_g000002 Rmu_ssc0000099.1_g000002 Rmu_ssc0000099.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272980 Rroxscaffold_3G00272990
rosa_rugosa	Rorug06G0432000 Rorug06G0432100 Rorug06G0432200 Rorug06G0432300
rosa_samantha	Rh7AG032600 Rh7AG032700 Rh7BG032600 Rh7BG032700 Rh7CG034500 Rh7CG034600 Rh7DG033200 Rh7DG033300
rosa_wichuraiana	Rw7G002720 Rw7G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	227, 298, 309, 617
AclWI	GGATC	1 cut(s)	440
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	184, 212, 252, 552
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	72, 588, 641
AluI	AGCT	3 cut(s)	72, 588, 641
Alw26I	GTCTC	3 cut(s)	125, 273, 695
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	641
ApeKI	GCWGC	2 cut(s)	196, 220
AseI	ATTAAT	1 cut(s)	390
AsiGI	ACCGGT	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	440
BbsI	GAAGAC	3 cut(s)	24, 390, 674
BbvI	GCAGC	2 cut(s)	208, 232
BccI	CCATC	2 cut(s)	52, 283
BceAI	ACGGC	1 cut(s)	663
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BcoDI	GTCTC	3 cut(s)	125, 273, 695
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	2 cut(s)	197, 221
BlsI	GCNGC	2 cut(s)	198, 222
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	132, 441, 442
BmsI	GCATC	2 cut(s)	617, 643
BpiI	GAAGAC	3 cut(s)	24, 390, 674
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	112, 599, 620
BsaWI	WCCGGW	2 cut(s)	21, 693
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	2 cut(s)	21, 244
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	112, 599, 620
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	3 cut(s)	123, 138, 151
BseXI	GCAGC	2 cut(s)	208, 232
Bsh1285I	CGRYCG	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	4 cut(s)	22, 245, 657, 694
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	3 cut(s)	125, 273, 695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	453
Bso31I	GGTCTC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	445, 454
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	4 cut(s)	227, 298, 309, 617
BspLI	GGNNCC	3 cut(s)	132, 441, 442
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	2 cut(s)	21, 244
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	2 cut(s)	21, 244
BssECI	CCNNGG	3 cut(s)	112, 599, 620
BssMI	GATC	2 cut(s)	445, 454
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	4 cut(s)	41, 129, 402, 590
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	2 cut(s)	448, 457
BstMAI	GTCTC	3 cut(s)	125, 273, 695
BstMBI	GATC	2 cut(s)	445, 454
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 226, 241, 297
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	208, 232
BstV2I	GAAGAC	3 cut(s)	24, 390, 674
BstXI	CCANNNNNNTGG	1 cut(s)	436
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	4 cut(s)	41, 129, 402, 590
CaiI	CAGNNNCTG	1 cut(s)	641
Cfr10I	RCCGGY	2 cut(s)	21, 244
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	282
CspAI	ACCGGT	1 cut(s)	21
CviAII	CATG	3 cut(s)	113, 137, 397
CviJI	RGCY	8 cut(s)	8, 72, 131, 291, 336, 358, 588, 641
CviKI_1	RGCY	8 cut(s)	8, 72, 131, 291, 336, 358, 588, 641
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	2 cut(s)	447, 456
DpnII	GATC	2 cut(s)	445, 454
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	3 cut(s)	116, 140, 400
FaiI	YATR	7 cut(s)	104, 114, 138, 192, 194, 398, 676
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	3 cut(s)	112, 136, 396
FauI	CCCGC	1 cut(s)	305
Fnu4HI	GCNGC	2 cut(s)	197, 221
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	197, 221
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	2 cut(s)	197, 221
HapII	CCGG	4 cut(s)	22, 245, 657, 694
Hin1II	CATG	3 cut(s)	116, 140, 400
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	4 cut(s)	22, 245, 657, 694
Hpy188I	TCNGA	3 cut(s)	85, 582, 612
HpyAV	CCTTC	2 cut(s)	87, 373
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	5 cut(s)	39, 127, 196, 404, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 226, 241, 297
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	3 cut(s)	116, 140, 400
KflI	GGGWCCC	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	445, 454
LmnI	GCTCC	3 cut(s)	100, 136, 659
Lsp1109I	GCAGC	2 cut(s)	208, 232
LweI	GCATC	2 cut(s)	617, 643
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	447, 456
MboI	GATC	2 cut(s)	445, 454
MboII	GAAGA	7 cut(s)	24, 78, 172, 200, 395, 480, 674
MluCI	AATT	3 cut(s)	45, 391, 544
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	502, 508
MseI	TTAA	2 cut(s)	168, 390
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	4 cut(s)	22, 245, 657, 694
MwoI	GCNNNNNNNGC	4 cut(s)	137, 226, 241, 297
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	2 cut(s)	445, 454
NlaIII	CATG	3 cut(s)	116, 140, 400
NlaIV	GGNNCC	3 cut(s)	132, 441, 442
NmeAIII	GCCGAG	2 cut(s)	624, 645
NmuCI	GTSAC	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	476
PinAI	ACCGGT	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	198, 222
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	440
PspN4I	GGNNCC	3 cut(s)	132, 441, 442
PspPI	GGNCC	1 cut(s)	440
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	168, 390
SatI	GCNGC	2 cut(s)	197, 221
Sau3AI	GATC	2 cut(s)	445, 454
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	340
SetI	ASST	8 cut(s)	74, 121, 480, 580, 590, 605, 643, 691
SfaNI	GCATC	2 cut(s)	617, 643
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	45, 391, 544
SsiI	CCGC	4 cut(s)	227, 298, 309, 617
SspMI	CTAG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	3 cut(s)	26, 286, 365
TasI	AATT	3 cut(s)	45, 391, 544
Tru1I	TTAA	2 cut(s)	168, 390
Tru9I	TTAA	2 cut(s)	168, 390
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	196, 220
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	119, 403, 480
TspGWI	ACGGA	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	440
VspI	ATTAAT	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.