Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000099.1

Orthogroup ID

OG0001991

Physical Location & Seq

Genomic Coordinates Reverse (-)

5452 .. 7374

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000099.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atgtggtttgtgagaatccacaacacgaaggaaggaaacgagaagcagcatctggatggtctctcgataattgctcttgttgttgcggcttaccttatgtgcattatactattagagaactttatcactctgccattagccatacgtgttgttggttttgttgtacttgtattgctgcttgcctcgcctctttgtgttgtaatcagagcacatcaaggggagttggatagtgtttcagagcctttcttaactgagggtgaccgtttagaagatggtaatgataaaaggagtttgcggtctgatatacacctgaatctattacaagcaatgtgcacaatagacttctggatgttgtttattgccatggtatgtggtatgggctcgggacttgcagtggttaataatcttagccaaataggacaatcgcttggttacagaaactttgagataagtactttggtttctttgctgagcatatggaatttctttggtcgtttgggagctggatatatatcggattgtttcctgcatcggaaaggatgggcaaggccattgttcatggtcatcactctagcatccatgagcattggccatctggtgattgcttctggtatgcctggtgctctctatactggatctgtattggtgggtgtgtgttacggttctcaatggtcactaatgccaacaatcacttctgagatatttggtgtgctacatatggggaccatcttcaatgccattaccattgccagtcctgttggatcttatatcttttctgtgagagtgataggatatatttatgacaaggaggtatcagaaccagagaatacatgctttggaactcaatgctttatgttatcattccttattatggcagctgctaccctttttggggctcttgctgccttggcattgttctttcggacgagaagtttctatagtcaggacattgatggaaaccgcaacagtccagactccagagtggcttctactacagatgttatgattatcaatctgttaaagtcaccggacttgagcttgtgggagataacaaaatcgagatcagatattcaacagttattgaggtgcctcttgacgattttgaggcatttcatgtttcaactctgcttctcgcctgattgtgaggattttgtgtcaggatcagaagatgagcaaagtgataatgttgacttcaccttcaagccagactgtgaaattgtcaaaccaaaacaagaagtagaatcaatggtcgataccagttgccaacaatccatacacaatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

428

Amino Acids

47.52

Weight (kDa)

5.12

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18940 AT1G74780 AT2G34350 AT2G34350 AT2G34355 AT2G34355
fragaria_vesca	FvH4_5g15790 FvH4_5g15790 FvH4_5g15790 FvH4_5g15810
malus_domestica	MD00G1132000.v1.1 MD06G1185400.v1.1 MD06G1185500.v1.1 MD06G1185600.v1.1 MD14G1191700.v1.1
prunus_persica	Prupe.5G184300_v2.0.a1 Prupe.5G184300_v2.0.a1
pyrus_communis	pycom06g16490 pycom06g16500 pycom14g15940
rosa_chinensis	RchiOBHm_Chr7g0180321 RchiOBHm_Chr7g0180331
rosa_laevigata	RLG00000005276 RLG00000005277
rosa_multiflora	Rmu_sc0003526.1_g000013 Rmu_sc0003526.1_g000014 Rmu_sc0031066.1_g000002 Rmu_ssc0000099.1_g000002 Rmu_ssc0000099.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272980 Rroxscaffold_3G00272990
rosa_rugosa	Rorug06G0432000 Rorug06G0432100 Rorug06G0432200 Rorug06G0432300
rosa_samantha	Rh7AG032600 Rh7AG032700 Rh7BG032600 Rh7BG032700 Rh7CG034500 Rh7CG034600 Rh7DG033200 Rh7DG033300
rosa_wichuraiana	Rw7G002720 Rw7G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1086
AciI	CCGC	3 cut(s)	86, 295, 961
AclWI	GGATC	3 cut(s)	643, 769, 1168
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	2 cut(s)	165, 454
AfiI	CCNNNNNNNGG	3 cut(s)	871, 891, 892
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	733, 1073, 1121, 1201
AjnI	CCWGG	1 cut(s)	616
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AluBI	AGCT	3 cut(s)	503, 878, 1038
AluI	AGCT	3 cut(s)	503, 878, 1038
Alw21I	GWGCWC	3 cut(s)	211, 335, 625
Alw26I	GTCTC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	643, 769, 1168
AlwNI	CAGNNNCTG	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	548, 589
ApaLI	GTGCAC	1 cut(s)	331
ApeKI	GCWGC	5 cut(s)	46, 175, 875, 878, 902
ApoI	RAATTY	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	4 cut(s)	269, 610, 1017, 1186
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	1086
BanII	GRGCYC	2 cut(s)	383, 898
Bbv12I	GWGCWC	3 cut(s)	211, 335, 625
BbvI	GCAGC	5 cut(s)	58, 162, 865, 887, 889
BccI	CCATC	6 cut(s)	50, 266, 534, 600, 734, 947
BciT130I	CCWGG	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	2 cut(s)	937, 993
BisI	GCNGC	6 cut(s)	47, 87, 176, 876, 879, 903
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	6 cut(s)	48, 88, 177, 877, 880, 904
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	618
Bme18I	GGWCC	1 cut(s)	723
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	2 cut(s)	724, 1088
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	3 cut(s)	58, 538, 584
BpmI	CTGGAG	1 cut(s)	961
Bpu1102I	GCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	1054
BsaAI	YACGTR	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	363, 906
BsaWI	WCCGGW	1 cut(s)	1027
Bsc4I	CCNNNNNNNGG	3 cut(s)	871, 891, 892
Bse1I	ACTGG	3 cut(s)	637, 750, 1257
Bse3DI	GCAATG	2 cut(s)	333, 744
Bse8I	GATNNNNATC	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	363, 906
BseGI	GGATG	4 cut(s)	61, 354, 545, 575
BseJI	GATNNNNATC	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	871, 891, 892
BseMI	GCAATG	2 cut(s)	333, 744
BseMII	CTCAG	3 cut(s)	243, 461, 687
BseNI	ACTGG	3 cut(s)	637, 750, 1257
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	5 cut(s)	58, 162, 865, 887, 889
BshFI	GGCC	2 cut(s)	550, 591
BshNI	GGYRCC	1 cut(s)	1086
BsiHKAI	GWGCWC	3 cut(s)	211, 335, 625
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	1028
BslFI	GGGAC	2 cut(s)	399, 736
BslI	CCNNNNNNNGG	3 cut(s)	871, 891, 892
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	399, 736
BsnI	GGCC	2 cut(s)	550, 591
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	5 cut(s)	211, 335, 383, 625, 898
Bsp143I	GATC	4 cut(s)	635, 761, 1061, 1160
Bsp1720I	GCTNAGC	1 cut(s)	470
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	3 cut(s)	86, 295, 961
BspANI	GGCC	2 cut(s)	550, 591
BspCNI	CTCAG	3 cut(s)	244, 462, 688
BspLI	GGNNCC	2 cut(s)	724, 1088
BspPI	GGATC	3 cut(s)	643, 769, 1168
BspT107I	GGYRCC	1 cut(s)	1086
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	333, 744
BsrI	ACTGG	3 cut(s)	637, 750, 1257
BssECI	CCNNGG	2 cut(s)	363, 906
BssMI	GATC	4 cut(s)	635, 761, 1061, 1160
BssT1I	CCWWGG	2 cut(s)	363, 906
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	5 cut(s)	263, 662, 968, 1077, 1211
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	252, 407, 470, 696
BstDSI	CCRYGG	1 cut(s)	363
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	4 cut(s)	61, 354, 545, 575
BstKTI	GATC	4 cut(s)	638, 764, 1064, 1163
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	635, 761, 1061, 1160
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 902, 908
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	1 cut(s)	834
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	2 cut(s)	937, 993
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	5 cut(s)	58, 162, 865, 887, 889
BstX2I	RGATCY	2 cut(s)	635, 761
BstYI	RGATCY	2 cut(s)	635, 761
BsuRI	GGCC	2 cut(s)	550, 591
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	4 cut(s)	61, 354, 545, 575
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	723
Csp6I	GTAC	2 cut(s)	164, 453
CviAII	CATG	5 cut(s)	364, 559, 580, 831, 1114
CviQI	GTAC	2 cut(s)	164, 453
DdeI	CTNAG	4 cut(s)	252, 407, 470, 696
DpnI	GATC	4 cut(s)	637, 763, 1063, 1162
DpnII	GATC	4 cut(s)	635, 761, 1061, 1160
EaeI	YGGCCR	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	363, 906
Eco24I	GRGCYC	2 cut(s)	383, 898
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	382
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	2 cut(s)	363, 906
EcoT38I	GRGCYC	2 cut(s)	383, 898
ErhI	CCWWGG	2 cut(s)	363, 906
FaeI	CATG	5 cut(s)	367, 562, 583, 834, 1117
FaqI	GGGAC	2 cut(s)	399, 736
FatI	CATG	5 cut(s)	363, 558, 579, 830, 1113
FauNDI	CATATG	2 cut(s)	476, 717
Fnu4HI	GCNGC	6 cut(s)	47, 87, 176, 876, 879, 903
FokI	GGATG	4 cut(s)	68, 361, 552, 562
FriOI	GRGCYC	2 cut(s)	383, 898
Fsp4HI	GCNGC	6 cut(s)	47, 87, 176, 876, 879, 903
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	6 cut(s)	47, 87, 176, 876, 879, 903
GsuI	CTGGAG	1 cut(s)	961
HaeIII	GGCC	2 cut(s)	550, 591
HapII	CCGG	1 cut(s)	1028
Hin1II	CATG	5 cut(s)	367, 562, 583, 834, 1117
HincII	GTYRAC	1 cut(s)	1189
HindII	GTYRAC	1 cut(s)	1189
HinfI	GANTC	4 cut(s)	15, 313, 974, 1241
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	4 cut(s)	269, 610, 1017, 1186
Hpy166II	GTNNAC	2 cut(s)	333, 1189
Hpy8I	GTNNAC	2 cut(s)	333, 1189
HpyAV	CCTTC	3 cut(s)	22, 26, 1207
HpyCH4III	ACNGT	5 cut(s)	263, 662, 968, 1077, 1211
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	102, 333, 392, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 902, 908
HpyF3I	CTNAG	4 cut(s)	252, 407, 470, 696
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	5 cut(s)	367, 562, 583, 834, 1117
Kzo9I	GATC	4 cut(s)	635, 761, 1061, 1160
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	5 cut(s)	58, 162, 865, 887, 889
LweI	GCATC	3 cut(s)	58, 538, 584
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	5 cut(s)	257, 431, 656, 672, 1023
MalI	GATC	4 cut(s)	637, 763, 1063, 1162
MboI	GATC	4 cut(s)	635, 761, 1061, 1160
MboII	GAAGA	3 cut(s)	281, 721, 1178
MflI	RGATCY	2 cut(s)	635, 761
MhlI	GDGCHC	5 cut(s)	211, 335, 383, 625, 898
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	3 cut(s)	69, 481, 1215
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	2 cut(s)	204, 739
MnlI	CCTC	8 cut(s)	193, 198, 247, 802, 1077, 1098, 1100, 1138
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	3 cut(s)	248, 399, 1019
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	3 cut(s)	184, 902, 908
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	2 cut(s)	476, 717
NdeII	GATC	4 cut(s)	635, 761, 1061, 1160
NlaIII	CATG	5 cut(s)	367, 562, 583, 834, 1117
NlaIV	GGNNCC	2 cut(s)	724, 1088
NmuCI	GTSAC	3 cut(s)	257, 672, 1023
NspI	RCATGY	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	15, 313, 1241
PkrI	GCNGC	6 cut(s)	48, 88, 177, 877, 880, 904
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	616
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	724, 1088
PspPI	GGNCC	1 cut(s)	723
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	2 cut(s)	635, 761
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	2 cut(s)	165, 454
RsaNI	GTAC	2 cut(s)	164, 453
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	248, 399, 1019
SatI	GCNGC	6 cut(s)	47, 87, 176, 876, 879, 903
Sau3AI	GATC	4 cut(s)	635, 761, 1061, 1160
Sau96I	GGNCC	1 cut(s)	723
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	5 cut(s)	211, 335, 383, 625, 898
SetI	ASST	9 cut(s)	96, 148, 312, 505, 813, 880, 1040, 1088, 1199
SfaNI	GCATC	3 cut(s)	58, 538, 584
SfcI	CTRYAG	2 cut(s)	937, 993
SinI	GGWCC	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	1033
SmoI	CTYRAG	1 cut(s)	1033
Sse9I	AATT	3 cut(s)	69, 481, 1215
SsiI	CCGC	3 cut(s)	86, 295, 961
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	2 cut(s)	363, 906
TaaI	ACNGT	5 cut(s)	263, 662, 968, 1077, 1211
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	65, 1058, 1251
TasI	AATT	3 cut(s)	69, 481, 1215
TatI	WGTACW	2 cut(s)	163, 452
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	15, 313, 1241
Tru1I	TTAA	3 cut(s)	248, 399, 1019
Tru9I	TTAA	3 cut(s)	248, 399, 1019
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	3 cut(s)	257, 672, 1023
TseI	GCWGC	5 cut(s)	46, 175, 875, 878, 902
Tsp45I	GTSAC	3 cut(s)	257, 672, 1023
TspDTI	ATGAA	2 cut(s)	547, 1102
TspRI	CASTG	1 cut(s)	399
VneI	GTGCAC	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	723
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	834
XspI	CTAG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.