Rorug06G0432200

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001991
Physical Location & Seq
Forward (+)
56733831 .. 56734897
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0432200.1

Sequence Viewer

Length: 672 bp
ATGGAGGAAGTGGAGCTTGCCTCCAAATCCAGTGAGTTTTCGGACAACCCACATCCGAAAATGGACCAACCAGTGCATTCAAACAAGCAGAAGCCGCGCAGTGTTTCATTTCTTGGCCTCTTTGCTGCTGCTGATAAAATGGACTATGTCTTGATGCTTTTCGGAAGTTTCGGAGCGTGTATCCATCGTGCTGCACTTCCTGTATTCTTTGTCTTGTATGGCAGGATGATAGATTCTTTGGGGCATATGGCTAAGCATCCTAACAAAATGTCTTCCCGGATTTCTGAGTATGCTTTGTACTTGATCTATCTTGGAATTGTTCTCTTTATATCAGCATGGATAGGTGTAGCATCTTGGACGCGAACTGGTGAGAGGCAGACAGCTCGTTTGCGATTGAAGTATCTTCAATCAGTTCTAAGGAAGGATATTGATTTTTTCGACACTGAAGCCAGAGACACTAACATCATTTTCCACATTTCAAGTGATGCTATACTAGTCCAAGATGCAATAAGTGACAAGACAGGCCACACTTTGCGTTACCTAGCTTTCTCAGTTCATTGTAGGATTGCCATTCGATTTGCATCGGTGTGGCAGCTTACGCTTCTTACCTTAGTTGTGGTTCCACTGATAGCTCTTGCAGGGGGAGCCTATATGACGCAGTCGGAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

223

Amino Acids

25.13

Weight (kDa)

8.85

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 54 - 219 5e-26 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 97, 361
AciI CCGC 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 4 cut(s) 81, 397, 407, 480
AhlI ACTAGT 1 cut(s) 493
AluBI AGCT 5 cut(s) 16, 383, 545, 595, 632
AluI AGCT 5 cut(s) 16, 383, 545, 595, 632
Alw26I GTCTC 1 cut(s) 447
AoxI GGCC 2 cut(s) 115, 523
ApeKI GCWGC 4 cut(s) 125, 128, 191, 592
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 112, 115, 178, 604
BccI CCATC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciVI GTATCC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 447
BcuI ACTAGT 1 cut(s) 493
BfaI CTAG 2 cut(s) 494, 542
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 5 cut(s) 95, 126, 129, 192, 593
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 5 cut(s) 96, 127, 130, 193, 594
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 621, 646
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 6 cut(s) 144, 265, 359, 475, 493, 590
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 580
Bse1I ACTGG 3 cut(s) 30, 71, 370
Bse8I GATNNNNATC 1 cut(s) 580
BseGI GGATG 3 cut(s) 52, 231, 256
BseJI GATNNNNATC 1 cut(s) 580
BseMII CTCAG 2 cut(s) 276, 564
BseNI ACTGG 3 cut(s) 30, 71, 370
BseXI GCAGC 4 cut(s) 112, 115, 178, 604
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 97, 361
BshFI GGCC 2 cut(s) 117, 525
BsiSI CCGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 2 cut(s) 117, 525
Bsp143I GATC 1 cut(s) 303
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 117, 525
BspCNI CTCAG 2 cut(s) 277, 563
BspFNI CGCG 2 cut(s) 97, 361
BspLI GGNNCC 2 cut(s) 621, 646
BsrI ACTGG 3 cut(s) 30, 71, 370
BssMI GATC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 5 cut(s) 252, 285, 416, 550, 610
BstF5I GGATG 3 cut(s) 52, 231, 256
BstFNI CGCG 2 cut(s) 97, 361
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 94, 598, 644
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 2 cut(s) 97, 361
BstV1I GCAGC 4 cut(s) 112, 115, 178, 604
BstV2I GAAGAC 1 cut(s) 264
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 117, 525
BtsCI GGATG 3 cut(s) 52, 231, 256
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 5 cut(s) 37, 78, 106, 441, 623
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 2 cut(s) 367, 664
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 336
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 5 cut(s) 252, 285, 416, 550, 610
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 465
FaeI CATG 1 cut(s) 339
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 1 cut(s) 335
FauNDI CATATG 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 95, 126, 129, 192, 593
FokI GGATG 3 cut(s) 39, 238, 243
Fsp4HI GCNGC 5 cut(s) 95, 126, 129, 192, 593
FspBI CTAG 2 cut(s) 494, 542
GlaI GCGC 1 cut(s) 98
GluI GCNGC 5 cut(s) 95, 126, 129, 192, 593
HaeIII GGCC 2 cut(s) 117, 525
HapII CCGG 1 cut(s) 277
HgaI GACGC 2 cut(s) 367, 664
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 339
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 6 cut(s) 43, 57, 164, 173, 286, 664
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 415
HpyCH4V TGCA 5 cut(s) 76, 194, 506, 581, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 598, 644
HpyF3I CTNAG 5 cut(s) 252, 285, 416, 550, 610
Hsp92II CATG 1 cut(s) 339
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 3 cut(s) 13, 173, 644
LpnPI CCDG 9 cut(s) 43, 84, 208, 213, 290, 351, 463, 507, 624
Lsp1109I GCAGC 4 cut(s) 112, 115, 178, 604
LweI GCATC 6 cut(s) 144, 265, 359, 475, 493, 590
MaeI CTAG 2 cut(s) 494, 542
MaeIII GTNAC 2 cut(s) 512, 536
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 2 cut(s) 264, 395
MluCI AATT 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 3 cut(s) 31, 128, 366
MslI CAYNNNNRTG 1 cut(s) 586
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 76
MvnI CGCG 2 cut(s) 97, 361
MwoI GCNNNNNNNGC 3 cut(s) 94, 598, 644
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 246
NdeII GATC 1 cut(s) 303
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 621, 646
NmuCI GTSAC 1 cut(s) 512
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 2 cut(s) 146, 658
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 5 cut(s) 96, 127, 130, 193, 594
PspN4I GGNNCC 2 cut(s) 621, 646
PspPI GGNCC 1 cut(s) 64
PsyI GACNNNGTC 2 cut(s) 146, 658
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 586
SatI GCNGC 5 cut(s) 95, 126, 129, 192, 593
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 277
SetI ASST 8 cut(s) 18, 346, 385, 543, 547, 597, 611, 634
SfaNI GCATC 6 cut(s) 144, 265, 359, 475, 493, 590
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 586
SpeI ACTAGT 1 cut(s) 493
Sse9I AATT 1 cut(s) 315
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 494, 542
StyD4I CCNGG 1 cut(s) 275
TaqI TCGA 2 cut(s) 438, 574
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 5 cut(s) 37, 78, 106, 448, 630
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 4 cut(s) 125, 128, 191, 592
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 2 cut(s) 96, 545
TspRI CASTG 5 cut(s) 37, 78, 106, 448, 630
Tth111I GACNNNGTC 2 cut(s) 146, 658
VpaK11BI GGWCC 1 cut(s) 64
XspI CTAG 2 cut(s) 494, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.