RLG00000005277

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
66477861 .. 66480629
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005277

Sequence Viewer

Length: 1827 bp
ATGGAAGCTAGACTAAAGAATCTGGCACGGTCCAAATGGGTGTCTACGGTGGCGAGCATATGGATACAGTGCACCAGCGGCACCCTATACACCTTCTCCGTCTACTCTCAGACCCTCAAGACCACACAGGGCTACGATCAGTCAACTCTCGACACTGTTTCTGTGTTCAAGGACTTTGGAGCCAACTGTGGGATTCTGTCTGGTGTTCTCTATTCTTATGGAGCCTCGTGGGCTGGACCTTGGGTTGTCCTGCTGGCCGGAGCAGTCCAGTGCTTTTTGGGCTACTTTCTGATGTGGGCCGCCGTGGTCGGACTTATTCCCCGGCCTCCGGTGGTGGTGATGTGTCTTTTCATGTTGCTAGCGGCACATGCTCAGTCGTTCTTCAACACTTCTAATGCGGTCACTGGTGTCAGTAACTTCCCGTATTATAAAGGCACCATTGTTGGCATCATGAAGGGATTTCTTGGTCTGAGCGGAGCAATAATAGTTCAAATATATCAGACCTTTATGTACGAAAAAACCACTTCATATCTTCTGATGCTAGCACTGCTGCCTCCTACAAACACTTTGTTGCTTATGTGGTTTGTGAGAATCCACAACACGAAGGAAGGAAACGAGAAGCAGCATCTGGATGGTCTCTCGATAATTGCTCTTGTTGTTGCGGCTTACCTTATGTGCGTTATACTACTAGAGAAGTTCATCACTCTGCCATTAGCCATACGTGTTGTTGGTTTTGTTGTACTTGTATTGCTGCTTGCCTCACCTCTTTGTGTTGTAATCAGAGCACATCAAGGGGAGTTGGATAGTGTTTCTGAGCCTTTCTTAACTGAGGGTGACCGTTTAGAAGATGGTAATGATAAAAGAAGTTTGCGGTCTGATATACACCTGAATCTATTACAAGCAATGTGCACAATAGACTTCTGGATGTTGTTTATTGCCATGGTATGTGGAATGGGCTCAGGTCTTGCAGTGGTTAATAATCTTAGCCAAATAGGACAATCGCTTGGTTACAGAAACTTTGAGATAAGTACTTTGGTTTCTTTGCTGAGCATCTGGAATTTCTTTGGTCGTTTGGGAGCTGGATATATGTCGGATTGTTTCCTGCATCGGAAAGGATGGGCAAGGCCATTGTTCATGGTCATCACTCTAGCATCCATGAGCATTGGCCATCTGGTGATTGCTTCTGGTATGCCTGGTGCTCTCTATACTGGATCTGTATTGGTGGGTGTGTGTTACGGTTCTCAATGGTCACTAATGCCAACAATCACTTCTGAGATATTTGGTGTGCTACATATGGGGACCATCTTCAATGCCATTACCATTGCCAGTCCTGTTGGTTCTTATATCTTTTCTGTGAGAGTGATAGGATATATTTATGACAAGGAGGCATCAGAACCAGAGAATACATGCTTTGGAACTCAATGCTTTATGTTATCATTCCTTATTATGGCAGCTGCTACCCTTTTGGGGGCTCTTGCTGCCTTGGCATTGTTCTTTCGGACGAGAAGTTTCTATAGTCAGGACATTGATGGAAACCGCAACAGATGTTATGAATCTGTTAAAGTCACCGGACTTGAGCTTGTGGGAGATAACAAAATCGAGATCAGACATTCAACAGTTATTGAGGTGCCTCTTGACGATTTTGAGGCATTTCATGTTCAACTCTGCTTCTCGCCTGATTGTGAGGATTTTGTGTCAGAATCAGAAGATGAGCAAAGTGATAATGTTGACTTCACCTTCAAGCCAGACTGTGAAGTTGTCAAACCAAAACAAGAAGTAGAATCAGTGGTCGATGCCAGTCGCCAACAATCCATTCACAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

609

Amino Acids

67.05

Weight (kDa)

5.43

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 12 - 260 7.7e-68 Nodulin-like
NFD4_C PF23262 303 - 506 4.8e-25 NFD4, C-terminal domain
MFS_1 PF07690 310 - 505 1.1e-13 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB1I GGYRCC 3 cut(s) 80, 434, 1627
AccBSI CCGCTC 1 cut(s) 474
AccI GTMKAC 2 cut(s) 44, 102
AciI CCGC 8 cut(s) 78, 300, 362, 398, 474, 662, 871, 1537
AclWI GGATC 1 cut(s) 1219
AcoI YGGCCR 2 cut(s) 255, 1165
AcsI RAATTY 1 cut(s) 1057
AfaI GTAC 3 cut(s) 512, 741, 1030
AfiI CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 7 cut(s) 169, 385, 491, 1309, 1614, 1661, 1741
AjnI CCWGG 1 cut(s) 1192
AjuI GAANNNNNNNTTGG 3 cut(s) 1252, 1284, 1797
AluBI AGCT 4 cut(s) 8, 1079, 1454, 1579
AluI AGCT 4 cut(s) 8, 1079, 1454, 1579
Alw21I GWGCWC 4 cut(s) 74, 787, 911, 1201
Alw26I GTCTC 1 cut(s) 641
Alw44I GTGCAC 2 cut(s) 70, 907
AlwI GGATC 1 cut(s) 1219
AlwNI CAGNNNCTG 1 cut(s) 628
AoxI GGCC 5 cut(s) 255, 297, 323, 1124, 1165
ApaLI GTGCAC 2 cut(s) 70, 907
ApeKI GCWGC 6 cut(s) 550, 622, 751, 1451, 1454, 1478
ApoI RAATTY 1 cut(s) 1057
AspS9I GGNCC 4 cut(s) 30, 236, 297, 1299
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 6 cut(s) 349, 753, 845, 1186, 1558, 1726
AsuNHI GCTAGC 2 cut(s) 358, 541
AvaII GGWCC 3 cut(s) 30, 236, 1299
BaeGI GKGCMC 2 cut(s) 74, 911
BalI TGGCCA 1 cut(s) 1167
BanI GGYRCC 3 cut(s) 80, 434, 1627
BanII GRGCYC 2 cut(s) 959, 1474
BauI CACGAG 1 cut(s) 226
Bbv12I GWGCWC 4 cut(s) 74, 787, 911, 1201
BbvI GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
BccI CCATC 6 cut(s) 626, 842, 1110, 1176, 1310, 1523
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 1194
BciVI GTATCC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 5 cut(s) 9, 359, 542, 689, 1148
BfmI CTRYAG 1 cut(s) 1513
BfuI GTATCC 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 230
BlpI GCTNAGC 1 cut(s) 1046
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 322, 1194
Bme18I GGWCC 3 cut(s) 30, 236, 1299
BmgT120I GGNCC 4 cut(s) 30, 236, 297, 1299
BmiI GGNNCC 6 cut(s) 82, 181, 223, 436, 1300, 1629
BmrFI CCNGG 2 cut(s) 322, 1194
BmsI GCATC 8 cut(s) 456, 528, 634, 1059, 1114, 1160, 1397, 1783
BmtI GCTAGC 2 cut(s) 362, 545
Bpu10I CCTNAGC 1 cut(s) 958
Bpu1102I GCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 2 cut(s) 101, 1595
BpuMI CCSGG 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 722
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 5 cut(s) 239, 303, 320, 939, 1482
BsaWI WCCGGW 2 cut(s) 328, 1568
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
Bse1I ACTGG 5 cut(s) 268, 409, 1213, 1326, 1797
Bse3DI GCAATG 2 cut(s) 909, 1320
BseBI CCWGG 1 cut(s) 1194
BseDI CCNNGG 5 cut(s) 239, 303, 320, 939, 1482
BseGI GGATG 4 cut(s) 637, 930, 1121, 1151
BseLI CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
BseMI GCAATG 2 cut(s) 909, 1320
BseMII CTCAG 8 cut(s) 122, 386, 461, 804, 819, 972, 1037, 1263
BseNI ACTGG 5 cut(s) 268, 409, 1213, 1326, 1797
BseSI GKGCMC 2 cut(s) 74, 911
BseXI GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
BshFI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BshNI GGYRCC 3 cut(s) 80, 434, 1627
BsiHKAI GWGCWC 4 cut(s) 74, 787, 911, 1201
BsiSI CCGG 4 cut(s) 258, 322, 329, 1569
BslFI GGGAC 1 cut(s) 1312
BslI CCNNNNNNNGG 5 cut(s) 189, 328, 1447, 1467, 1468
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 1312
BsnI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
Bso31I GGTCTC 1 cut(s) 641
Bsp1286I GDGCHC 6 cut(s) 74, 787, 911, 959, 1201, 1474
Bsp143I GATC 3 cut(s) 136, 1211, 1602
Bsp1720I GCTNAGC 1 cut(s) 1046
Bsp19I CCATGG 1 cut(s) 939
BspACI CCGC 8 cut(s) 78, 300, 362, 398, 474, 662, 871, 1537
BspANI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BspCNI CTCAG 8 cut(s) 121, 385, 462, 805, 820, 971, 1038, 1264
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 6 cut(s) 82, 181, 223, 436, 1300, 1629
BspOI GCTAGC 2 cut(s) 362, 545
BspPI GGATC 1 cut(s) 1219
BspT107I GGYRCC 3 cut(s) 80, 434, 1627
BspTNI GGTCTC 1 cut(s) 641
BsrBI CCGCTC 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 909, 1320
BsrI ACTGG 5 cut(s) 268, 409, 1213, 1326, 1797
BssECI CCNNGG 5 cut(s) 239, 303, 320, 939, 1482
BssMI GATC 3 cut(s) 136, 1211, 1602
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 3 cut(s) 239, 939, 1482
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 1194
Bst4CI ACNGT 9 cut(s) 30, 49, 69, 157, 188, 839, 1238, 1618, 1751
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 5 cut(s) 55, 255, 360, 543, 756
BstDEI CTNAG 9 cut(s) 108, 372, 470, 813, 828, 958, 983, 1046, 1272
BstDSI CCRYGG 2 cut(s) 303, 939
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 4 cut(s) 637, 930, 1121, 1151
BstKTI GATC 3 cut(s) 139, 1214, 1605
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 3 cut(s) 136, 1211, 1602
BstMWI GCNNNNNNNGC 7 cut(s) 78, 230, 279, 368, 547, 1478, 1484
BstNI CCWGG 1 cut(s) 1194
BstNSI RCATGY 2 cut(s) 371, 1410
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 2 cut(s) 320, 1192
BstSFI CTRYAG 1 cut(s) 1513
BstSLI GKGCMC 2 cut(s) 74, 911
BstV1I GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
BstX2I RGATCY 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1211
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 5 cut(s) 257, 299, 325, 1126, 1167
BtgI CCRYGG 2 cut(s) 303, 939
BtsCI GGATG 4 cut(s) 637, 930, 1121, 1151
BtsI GCAGTG 2 cut(s) 545, 975
BtsIMutI CAGTG 7 cut(s) 74, 153, 275, 402, 545, 975, 1791
Cac8I GCNNGC 5 cut(s) 55, 255, 360, 543, 756
CaiI CAGNNNCTG 1 cut(s) 628
CciI TCATGA 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 30, 236, 297, 1299
Csp6I GTAC 3 cut(s) 511, 740, 1029
CviAII CATG 8 cut(s) 352, 368, 451, 940, 1135, 1156, 1407, 1655
CviQI GTAC 3 cut(s) 511, 740, 1029
DdeI CTNAG 9 cut(s) 108, 372, 470, 813, 828, 958, 983, 1046, 1272
DpnI GATC 3 cut(s) 138, 1213, 1604
DpnII GATC 3 cut(s) 136, 1211, 1602
EaeI YGGCCR 2 cut(s) 255, 1165
Eco130I CCWWGG 3 cut(s) 239, 939, 1482
Eco24I GRGCYC 2 cut(s) 959, 1474
Eco31I GGTCTC 1 cut(s) 641
Eco47I GGWCC 3 cut(s) 30, 236, 1299
Eco91I GGTNACC 1 cut(s) 833
EcoO65I GGTNACC 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 1192
EcoT14I CCWWGG 3 cut(s) 239, 939, 1482
EcoT38I GRGCYC 2 cut(s) 959, 1474
ErhI CCWWGG 3 cut(s) 239, 939, 1482
FaeI CATG 8 cut(s) 355, 371, 454, 943, 1138, 1159, 1410, 1658
FaqI GGGAC 1 cut(s) 1312
FatI CATG 8 cut(s) 351, 367, 450, 939, 1134, 1155, 1406, 1654
FauNDI CATATG 2 cut(s) 59, 1293
FblI GTMKAC 2 cut(s) 44, 102
FokI GGATG 4 cut(s) 644, 937, 1128, 1138
FriOI GRGCYC 2 cut(s) 959, 1474
FspBI CTAG 5 cut(s) 9, 359, 542, 689, 1148
HaeIII GGCC 5 cut(s) 257, 299, 325, 1126, 1167
HapII CCGG 4 cut(s) 258, 322, 329, 1569
Hin1II CATG 8 cut(s) 355, 371, 454, 943, 1138, 1159, 1410, 1658
HincII GTYRAC 2 cut(s) 144, 1729
HindII GTYRAC 2 cut(s) 144, 1729
HinfI GANTC 7 cut(s) 19, 193, 591, 889, 1553, 1700, 1781
HpaII CCGG 4 cut(s) 258, 322, 329, 1569
HphI GGTGA 6 cut(s) 349, 753, 845, 1186, 1558, 1726
Hpy166II GTNNAC 6 cut(s) 45, 72, 103, 144, 909, 1729
Hpy8I GTNNAC 6 cut(s) 45, 72, 103, 144, 909, 1729
HpyAV CCTTC 5 cut(s) 103, 448, 598, 602, 1747
HpyCH4III ACNGT 9 cut(s) 30, 49, 69, 157, 188, 839, 1238, 1618, 1751
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 4 cut(s) 72, 909, 968, 1105
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 230, 279, 368, 547, 1478, 1484
HpyF3I CTNAG 9 cut(s) 108, 372, 470, 813, 828, 958, 983, 1046, 1272
HpySE526I ACGT 1 cut(s) 721
Hsp92II CATG 8 cut(s) 355, 371, 454, 943, 1138, 1159, 1410, 1658
Kzo9I GATC 3 cut(s) 136, 1211, 1602
LmnI GCTCC 5 cut(s) 179, 221, 260, 476, 1076
Lsp1109I GCAGC 6 cut(s) 537, 634, 738, 1441, 1463, 1465
LweI GCATC 8 cut(s) 456, 528, 634, 1059, 1114, 1160, 1397, 1783
MaeI CTAG 5 cut(s) 9, 359, 542, 689, 1148
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 7 cut(s) 400, 413, 833, 1007, 1232, 1248, 1564
MalI GATC 3 cut(s) 138, 1213, 1604
MbiI CCGCTC 1 cut(s) 474
MboI GATC 3 cut(s) 136, 1211, 1602
MboII GAAGA 5 cut(s) 373, 524, 857, 1297, 1718
MflI RGATCY 1 cut(s) 1211
MhlI GDGCHC 6 cut(s) 74, 787, 911, 959, 1201, 1474
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 2 cut(s) 645, 1057
MluNI TGGCCA 1 cut(s) 1167
MmeI TCCRAC 3 cut(s) 289, 780, 1071
Mox20I TGGCCA 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 3 cut(s) 824, 975, 1560
MslI CAYNNNNRTG 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 2 cut(s) 78, 1454
MspI CCGG 4 cut(s) 258, 322, 329, 1569
MspR9I CCNGG 2 cut(s) 322, 1194
MvaI CCWGG 1 cut(s) 1194
MwoI GCNNNNNNNGC 7 cut(s) 78, 230, 279, 368, 547, 1478, 1484
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 939
NdeI CATATG 2 cut(s) 59, 1293
NdeII GATC 3 cut(s) 136, 1211, 1602
NheI GCTAGC 2 cut(s) 358, 541
NlaIII CATG 8 cut(s) 355, 371, 454, 943, 1138, 1159, 1410, 1658
NlaIV GGNNCC 6 cut(s) 82, 181, 223, 436, 1300, 1629
NmuCI GTSAC 4 cut(s) 400, 833, 1248, 1564
NspI RCATGY 2 cut(s) 371, 1410
PagI TCATGA 1 cut(s) 450
PfeI GAWTC 7 cut(s) 19, 193, 591, 889, 1553, 1700, 1781
Ppu21I YACGTR 1 cut(s) 722
PsiI TTATAA 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 1192
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 1 cut(s) 1192
PspN4I GGNNCC 6 cut(s) 82, 181, 223, 436, 1300, 1629
PspPI GGNCC 4 cut(s) 30, 236, 297, 1299
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 1211
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 3 cut(s) 512, 741, 1030
RsaNI GTAC 3 cut(s) 511, 740, 1029
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 3 cut(s) 824, 975, 1560
Sau3AI GATC 3 cut(s) 136, 1211, 1602
Sau96I GGNCC 4 cut(s) 30, 236, 297, 1299
ScaI AGTACT 1 cut(s) 1030
ScrFI CCNGG 2 cut(s) 322, 1194
SduI GDGCHC 6 cut(s) 74, 787, 911, 959, 1201, 1474
SfaNI GCATC 8 cut(s) 456, 528, 634, 1059, 1114, 1160, 1397, 1783
SfcI CTRYAG 1 cut(s) 1513
SinI GGWCC 3 cut(s) 30, 236, 1299
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 116, 1574
SmoI CTYRAG 2 cut(s) 116, 1574
Sse9I AATT 2 cut(s) 645, 1057
SsiI CCGC 8 cut(s) 78, 300, 362, 398, 474, 662, 871, 1537
SspMI CTAG 5 cut(s) 9, 359, 542, 689, 1148
StyD4I CCNGG 2 cut(s) 320, 1192
StyI CCWWGG 3 cut(s) 239, 939, 1482
TaaI ACNGT 9 cut(s) 30, 49, 69, 157, 188, 839, 1238, 1618, 1751
TaiI ACGT 1 cut(s) 724
TaqI TCGA 4 cut(s) 150, 641, 1599, 1791
TasI AATT 2 cut(s) 645, 1057
TatI WGTACW 2 cut(s) 739, 1028
TauI GCSGC 4 cut(s) 81, 302, 365, 665
TfiI GAWTC 7 cut(s) 19, 193, 591, 889, 1553, 1700, 1781
Tru1I TTAA 3 cut(s) 824, 975, 1560
Tru9I TTAA 3 cut(s) 824, 975, 1560
TscAI CASTG 7 cut(s) 74, 160, 275, 409, 552, 975, 1791
TseFI GTSAC 4 cut(s) 400, 833, 1248, 1564
TseI GCWGC 6 cut(s) 550, 622, 751, 1451, 1454, 1478
Tsp45I GTSAC 4 cut(s) 400, 833, 1248, 1564
TspDTI ATGAA 7 cut(s) 340, 467, 516, 688, 1123, 1566, 1643
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 7 cut(s) 74, 160, 275, 409, 552, 975, 1791
VneI GTGCAC 2 cut(s) 70, 907
VpaK11BI GGWCC 3 cut(s) 30, 236, 1299
XapI RAATTY 1 cut(s) 1057
XceI RCATGY 2 cut(s) 371, 1410
XmiI GTMKAC 2 cut(s) 44, 102
XspI CTAG 5 cut(s) 9, 359, 542, 689, 1148
ZrmI AGTACT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.