Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Reverse (-)

14912098 .. 14913894

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTACGCTCTTCACCGTCGCTCGTCCTTCTTCACTCCTCTATGTTTCCTCCATAAATCCAAGCAAGACCTTCTCTCCTTCTATCTCCCTAAAACTTAACTCTCTCTCTTTCTCTTTTGGTTATCGTCCCAAGCCACTCCGGTTTTCTAAAATCCGATCTTCTCTGCCCTCGGAATCTGAATCGGAATCCGACCTAGATGCGTCTGCAGTTACAGATGAATGGGGTGAGAAACCTGGAGATGCAAATGAGCCCGACTCTCAGCCAGATAATGTGACCGTGAATGTGATTACGGACGAATGGGGCGAGAAATCCGGACCCGAACTTGAGGAATCCGGGACCCGGTTTATGGAATCGGATCCTCCAAGGAACGAAGACGAGTGGGGAGGAGAAATTGGAGGAGAAACTGAAGCCGACGCTGGAAATGGAAGTGCGGTGTCTGACCCGACTTGGGAGCTGAAAAGGTGTTTGGCGGATTCGGTGTACGGAACTGAATTAGGTTTCAAAGCTGGGTCAGAAGTCCGAGCGGAGGTTTTGGAGCTTGTGAATCAACTGGAAGCTCTGAATCCTACTCCGGCTCCGTTAGAGAATCCAGAACTTCTCGACGGCAACTGGGTTTTGCTGTACACTGCTTTCTCTGAGTTGATTCCTCTACTAGCTGCGGGTTCGACACCTTTGTTGAAAGTTAAAAGCATAAGTCAGTCAATAGACACAAACAATCTCATTATCGACAACTCCACTACACTCTCCAGCCCTTTTGCAGACTTCTCCTTCAGTGCTACTGCTTCATTTGAAGTTCGAAGCCCTTCAAGAATTGAGGTTTCTTTCAAAGAAGGCACGCTAAAACCCCCGGTGATCAAATCAAGTGTAGATCTCCCAGAGAGTGTGGGCGTCTTTGGGCAGCAGATTAGCCTTTCGTTGTTAAAGCAGTCTTTGAACCCCTTACAAGATGTGGCAGCAAACATTTCACGGGCACTCTCTGGTCAGCCACCTCTCAAGCTTCCGTTTCCAGGAAACCGAGGCAGCTCTTGGCTCTTGACCACTTATCTCGACAAGGATCTCAGGATTTCTAGAGGAGATGGTGGCCTTTTCGTGCTTGCCAGAGAAGGAAGCTCTCTGCTTGAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

376

Amino Acids

40.5

Weight (kDa)

4.45

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	152 - 367	3.9e-75	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	527
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	4 cut(s)	434, 473, 527, 662
AclWI	GGATC	3 cut(s)	353, 366, 1065
AcuI	CTGAAG	2 cut(s)	429, 757
AcyI	GRCGYC	1 cut(s)	891
AfaI	GTAC	2 cut(s)	485, 626
AfiI	CCNNNNNNNGG	5 cut(s)	342, 349, 451, 529, 1010
AgsI	TTSAA	6 cut(s)	505, 682, 794, 810, 829, 937
AjnI	CCWGG	2 cut(s)	235, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	9 cut(s)	457, 509, 541, 560, 659, 1000, 1026, 1113, 1126
AluI	AGCT	9 cut(s)	457, 509, 541, 560, 659, 1000, 1026, 1113, 1126
Alw21I	GWGCWC	1 cut(s)	1128
AlwI	GGATC	3 cut(s)	353, 366, 1065
Aor13HI	TCCGGA	1 cut(s)	314
AoxI	GGCC	1 cut(s)	1084
ApeKI	GCWGC	4 cut(s)	659, 901, 956, 1023
Asp700I	GAANNNNTTC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	317, 339
AsuC2I	CCSGG	3 cut(s)	337, 343, 851
AsuHPI	GGTGA	3 cut(s)	7, 239, 865
AsuII	TTCGAA	1 cut(s)	799
AvaII	GGWCC	2 cut(s)	317, 339
BaeGI	GKGCMC	1 cut(s)	976
BamHI	GGATCC	1 cut(s)	358
BanII	GRGCYC	2 cut(s)	255, 1128
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	1128
BbvI	GCAGC	4 cut(s)	646, 913, 968, 1035
BccI	CCATC	1 cut(s)	1073
BceAI	ACGGC	1 cut(s)	622
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	237, 1011
BclI	TGATCA	1 cut(s)	855
BcnI	CCSGG	3 cut(s)	337, 343, 851
BfaI	CTAG	3 cut(s)	197, 656, 1071
BfmI	CTRYAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	871
BisI	GCNGC	4 cut(s)	660, 902, 957, 1024
BlsI	GCNGC	4 cut(s)	661, 903, 958, 1025
Bme1390I	CCNGG	5 cut(s)	237, 337, 343, 851, 1011
Bme18I	GGWCC	2 cut(s)	317, 339
BmgT120I	GGNCC	2 cut(s)	317, 339
BmiI	GGNNCC	5 cut(s)	319, 340, 341, 360, 579
BmrFI	CCNGG	5 cut(s)	237, 337, 343, 851, 1011
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	190, 232
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	2 cut(s)	258, 733
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	2 cut(s)	347, 980
BpuMI	CCSGG	3 cut(s)	337, 343, 851
BsaHI	GRCGYC	1 cut(s)	891
BsaJI	CCNNGG	4 cut(s)	171, 365, 849, 1018
BsaWI	WCCGGW	2 cut(s)	141, 314
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 562, 592
Bsc4I	CCNNNNNNNGG	5 cut(s)	342, 349, 451, 529, 1010
Bse1I	ACTGG	2 cut(s)	558, 617
BseAI	TCCGGA	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	237, 1011
BseDI	CCNNGG	4 cut(s)	171, 365, 849, 1018
BseLI	CCNNNNNNNGG	5 cut(s)	342, 349, 451, 529, 1010
BseMII	CTCAG	3 cut(s)	275, 630, 1075
BseNI	ACTGG	2 cut(s)	558, 617
BseRI	GAGGAG	4 cut(s)	29, 402, 414, 1089
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	4 cut(s)	646, 913, 968, 1035
BseYI	CCCAGC	1 cut(s)	509
BshFI	GGCC	1 cut(s)	1086
BsiHKAI	GWGCWC	1 cut(s)	1128
BsiSI	CCGG	6 cut(s)	142, 315, 336, 343, 575, 851
BslFI	GGGAC	2 cut(s)	114, 352
BslI	CCNNNNNNNGG	5 cut(s)	342, 349, 451, 529, 1010
BsmFI	GGGAC	2 cut(s)	114, 352
BsnI	GGCC	1 cut(s)	1086
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	255, 976, 1128
Bsp13I	TCCGGA	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	158, 358, 855, 871, 1057
BspACI	CCGC	4 cut(s)	434, 473, 527, 662
BspANI	GGCC	1 cut(s)	1086
BspCNI	CTCAG	3 cut(s)	274, 631, 1074
BspEI	TCCGGA	1 cut(s)	314
BspLI	GGNNCC	5 cut(s)	319, 340, 341, 360, 579
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	3 cut(s)	353, 366, 1065
BspQI	GCTCTTC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	799
BsrBI	CCGCTC	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	558, 617
BssECI	CCNNGG	4 cut(s)	171, 365, 849, 1018
BssMI	GATC	5 cut(s)	158, 358, 855, 871, 1057
BssNI	GRCGYC	1 cut(s)	891
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	237, 1011
Bst4CI	ACNGT	2 cut(s)	19, 280
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	891
BstAUI	TGTACA	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	839, 1098
BstDEI	CTNAG	3 cut(s)	261, 639, 1061
BstKTI	GATC	5 cut(s)	161, 361, 858, 874, 1060
BstMBI	GATC	5 cut(s)	158, 358, 855, 871, 1057
BstNI	CCWGG	2 cut(s)	237, 1011
BstSCI	CCNGG	5 cut(s)	235, 335, 341, 849, 1009
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	976
BstV1I	GCAGC	4 cut(s)	646, 913, 968, 1035
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	3 cut(s)	358, 871, 1057
BstYI	RGATCY	3 cut(s)	358, 871, 1057
BsuRI	GGCC	1 cut(s)	1086
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	627, 781
Cac8I	GCNNGC	2 cut(s)	839, 1098
Cfr13I	GGNCC	2 cut(s)	317, 339
CseI	GACGC	3 cut(s)	192, 425, 880
Csp6I	GTAC	2 cut(s)	484, 625
CviQI	GTAC	2 cut(s)	484, 625
DdeI	CTNAG	3 cut(s)	261, 639, 1061
DpnI	GATC	5 cut(s)	160, 360, 857, 873, 1059
DpnII	GATC	5 cut(s)	158, 358, 855, 871, 1057
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	1126
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	255, 1128
Eco47I	GGWCC	2 cut(s)	317, 339
Eco53kI	GAGCTC	1 cut(s)	1126
Eco57I	CTGAAG	2 cut(s)	429, 757
EcoICRI	GAGCTC	1 cut(s)	1126
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	235, 1009
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	255, 1128
ErhI	CCWWGG	1 cut(s)	365
FaiI	YATR	4 cut(s)	45, 56, 350, 695
FaqI	GGGAC	2 cut(s)	114, 352
FauI	CCCGC	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	4 cut(s)	660, 902, 957, 1024
FriOI	GRGCYC	2 cut(s)	255, 1128
Fsp4HI	GCNGC	4 cut(s)	660, 902, 957, 1024
FspBI	CTAG	3 cut(s)	197, 656, 1071
GluI	GCNGC	4 cut(s)	660, 902, 957, 1024
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	2 cut(s)	258, 733
HaeIII	GGCC	1 cut(s)	1086
HapII	CCGG	6 cut(s)	142, 315, 336, 343, 575, 851
HgaI	GACGC	3 cut(s)	192, 425, 880
Hin1I	GRCGYC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	998
HpaII	CCGG	6 cut(s)	142, 315, 336, 343, 575, 851
HphI	GGTGA	3 cut(s)	7, 239, 865
Hpy166II	GTNNAC	2 cut(s)	484, 627
Hpy188III	TCNNGA	8 cut(s)	315, 593, 602, 810, 1036, 1049, 1063, 1071
Hpy8I	GTNNAC	2 cut(s)	484, 627
Hpy99I	CGWCG	3 cut(s)	23, 419, 608
HpyAV	CCTTC	7 cut(s)	39, 82, 90, 781, 816, 827, 1100
HpyCH4III	ACNGT	2 cut(s)	19, 280
HpyCH4V	TGCA	3 cut(s)	209, 245, 761
HpyF3I	CTNAG	3 cut(s)	261, 639, 1061
Hsp92I	GRCGYC	1 cut(s)	891
KflI	GGGWCCC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	5 cut(s)	158, 358, 855, 871, 1057
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	3 cut(s)	454, 538, 583
Lsp1109I	GCAGC	4 cut(s)	646, 913, 968, 1035
LweI	GCATC	2 cut(s)	190, 232
MaeI	CTAG	3 cut(s)	197, 656, 1071
MaeIII	GTNAC	2 cut(s)	211, 274
MalI	GATC	5 cut(s)	160, 360, 857, 873, 1059
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	5 cut(s)	158, 358, 855, 871, 1057
MboII	GAAGA	4 cut(s)	4, 24, 153, 386
MflI	RGATCY	3 cut(s)	358, 871, 1057
MhlI	GDGCHC	3 cut(s)	255, 976, 1128
MluCI	AATT	3 cut(s)	393, 494, 813
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	805
MseI	TTAA	3 cut(s)	99, 687, 923
MspI	CCGG	6 cut(s)	142, 315, 336, 343, 575, 851
MspR9I	CCNGG	5 cut(s)	237, 337, 343, 851, 1011
MvaI	CCWGG	2 cut(s)	237, 1011
NciI	CCSGG	3 cut(s)	337, 343, 851
NdeII	GATC	5 cut(s)	158, 358, 855, 871, 1057
NlaIV	GGNNCC	5 cut(s)	319, 340, 341, 360, 579
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	805
PfoI	TCCNGGA	2 cut(s)	335, 1009
PkrI	GCNGC	4 cut(s)	661, 903, 958, 1025
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	1128
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	235, 1009
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	235, 1009
PspN4I	GGNNCC	5 cut(s)	319, 340, 341, 360, 579
PspPI	GGNCC	2 cut(s)	317, 339
PspPPI	RGGWCCY	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	3 cut(s)	358, 871, 1057
RsaI	GTAC	2 cut(s)	485, 626
RsaNI	GTAC	2 cut(s)	484, 625
SacI	GAGCTC	1 cut(s)	1128
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	99, 687, 923
SatI	GCNGC	4 cut(s)	660, 902, 957, 1024
Sau3AI	GATC	5 cut(s)	158, 358, 855, 871, 1057
Sau96I	GGNCC	2 cut(s)	317, 339
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	5 cut(s)	237, 337, 343, 851, 1011
SduI	GDGCHC	3 cut(s)	255, 976, 1128
SfaNI	GCATC	2 cut(s)	190, 232
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	2 cut(s)	317, 339
SmlI	CTYRAG	3 cut(s)	326, 995, 1121
SmoI	CTYRAG	3 cut(s)	326, 995, 1121
Sse9I	AATT	3 cut(s)	393, 494, 813
SsiI	CCGC	4 cut(s)	434, 473, 527, 662
SspMI	CTAG	3 cut(s)	197, 656, 1071
SstI	GAGCTC	1 cut(s)	1128
StyD4I	CCNGG	5 cut(s)	235, 335, 341, 849, 1009
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	19, 280
TaqI	TCGA	5 cut(s)	603, 668, 729, 799, 1050
TasI	AATT	3 cut(s)	393, 494, 813
TatI	WGTACW	1 cut(s)	624
Tru1I	TTAA	3 cut(s)	99, 687, 923
Tru9I	TTAA	3 cut(s)	99, 687, 923
TscAI	CASTG	2 cut(s)	634, 781
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	659, 901, 956, 1023
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	234, 777
TspGWI	ACGGA	4 cut(s)	308, 501, 570, 993
TspRI	CASTG	2 cut(s)	634, 781
VpaK11BI	GGWCC	2 cut(s)	317, 339
XbaI	TCTAGA	1 cut(s)	1070
XmnI	GAANNNNTTC	1 cut(s)	805
XspI	CTAG	3 cut(s)	197, 656, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.