Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Reverse (-)

2527187 .. 2529867

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCCACTTTCTTGGAGGCCAATATGGAAAGATGATTCAGATGACGACCAAATAGCAAAACAAAAAGCACTGGAAAGAAAAAGAAAGGGAAAAGAAATGGCTCTGAATCTCATCTTCACCTCACACTCCTCCTCCCCTGTCCTCTCCAAAAACCTCCTCAATTCCCCATCCTCATTTCCAACCCCAAAGTTCCAATCTTTCTCTCTCTTCTCCCCAAACCCTAATCCCAAACTCCCCCCCCTCCGCCTACGCGCCTCTCCCTCCGGCGACACCCCCACCGATGACGACCGCCCCACGAAGATTACTGACGAATGGGGCGAGAAGGCCGACCCTGAGCCGGAGCCCCGGTCCAAACTCTCCGAATCGGACCCTCCGCAGAACGAGGACGAATGGGGAGGCGGAGGAGATGGGGTTGTAGAAGTTGGGAATGGAAATGCGGCCAAAACTGAGGTTGCCATTGAGGAGAAGGTGGATGGTAAGCTCAGTGAGCTCAAGAGGGGTTTGGTGGACACGGTTTATGGGACCGAATTCGGGTTCCGGGCCGGGTCCGAGGTGAGAGCGGAGGCTTTAGAGTTCGTTAGCCAGTTGGAGGCGGCGAATCCCAACCCGGCTCCGACGGAGAATCCGGGCCTTCTTGATGGCAACTGGGTTTTGCTGTACACTGCATCCTCTGAGCTGTTGCCACTACTCGCAGCAGGTGGCACACCATTGTTGAAGGTAAATAAAATAACCCAAGCGATCAACAGCAGCAGCCTGACTATTTTGAACTCCACCACGCTGTCCAGCCCTTTTGCTAGTTTCTCGTTCAGTGCATCTGCTAGCTTTGAAGTTAGAAGTCCATCAAGAATCCAGGTGGAATTCAAGGAAGGCAGCTTTCAGCCTCCGGAGATTAAGTCAAGCGTTGATCTCCCTCAAGAAGTGGAAGTCTTTGGGCAGAAAATCAATTTATCGTCCGTCCAGCAAACTCTCAATCCTTTGCAGGATGCTGTTGCAGGTATCTCTAGGACCATTTCTGGTCAGCCACCGCTTAAGGTTCCCGTTCCAGGTGAACGGACCAAGTCTTGGCTTCTTATTACATACCTTGATGAGGATCTTCGGATCTCAAGGGGGGATGGTGGTCTTTTTGTGCTTGCTAGAGAAGGGAGCCCGCTTTTATACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

388

Amino Acids

41.98

Weight (kDa)

4.88

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	163 - 378	1.9e-69	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	686
Acc36I	ACCTGC	2 cut(s)	686, 983
AccB7I	CCANNNNNTGG	1 cut(s)	1062
AccBSI	CCGCTC	1 cut(s)	560
AccII	CGCG	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	9 cut(s)	244, 289, 374, 399, 437, 560, 593, 1025, 1148
AclWI	GGATC	2 cut(s)	1098, 1106
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	527, 857
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	6 cut(s)	337, 531, 589, 1043, 1062, 1087
AflII	CTTAAG	1 cut(s)	1028
AgsI	TTSAA	4 cut(s)	715, 766, 827, 862
AjnI	CCWGG	2 cut(s)	849, 1042
AluBI	AGCT	5 cut(s)	481, 490, 676, 822, 873
AluI	AGCT	5 cut(s)	481, 490, 676, 822, 873
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	1098, 1106
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	5 cut(s)	17, 324, 438, 540, 628
ApeKI	GCWGC	4 cut(s)	692, 747, 750, 870
ApoI	RAATTY	2 cut(s)	527, 857
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	8 cut(s)	348, 367, 522, 540, 546, 628, 1005, 1053
AsuC2I	CCSGG	5 cut(s)	346, 539, 544, 608, 627
AsuHPI	GGTGA	3 cut(s)	109, 565, 1058
AsuNHI	GCTAGC	1 cut(s)	818
AvaII	GGWCC	6 cut(s)	348, 367, 522, 546, 1005, 1053
BanII	GRGCYC	3 cut(s)	345, 492, 1148
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	4 cut(s)	704, 759, 762, 882
BccI	CCATC	6 cut(s)	175, 401, 467, 632, 847, 1106
BciT130I	CCWGG	2 cut(s)	851, 1044
BcnI	CCSGG	5 cut(s)	346, 539, 544, 608, 627
BfaI	CTAG	4 cut(s)	795, 819, 1002, 1134
BfrI	CTTAAG	1 cut(s)	1028
BfuAI	ACCTGC	2 cut(s)	686, 983
BisI	GCNGC	6 cut(s)	438, 594, 693, 748, 751, 871
BlsI	GCNGC	6 cut(s)	439, 595, 694, 749, 752, 872
Bme1390I	CCNGG	7 cut(s)	346, 539, 544, 608, 627, 851, 1044
Bme18I	GGWCC	6 cut(s)	348, 367, 522, 546, 1005, 1053
BmgT120I	GGNCC	8 cut(s)	348, 367, 522, 540, 546, 628, 1005, 1053
BmiI	GGNNCC	8 cut(s)	342, 369, 523, 536, 547, 612, 1035, 1145
BmrFI	CCNGG	7 cut(s)	346, 539, 544, 608, 627, 851, 1044
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	3 cut(s)	674, 821, 973
BmtI	GCTAGC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	655
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	3 cut(s)	476, 897, 1087
BpuMI	CCSGG	5 cut(s)	346, 539, 544, 608, 627
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaJI	CCNNGG	2 cut(s)	344, 549
BsaWI	WCCGGW	1 cut(s)	883
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 332, 362, 396, 426, 878, 908
Bsc4I	CCNNNNNNNGG	6 cut(s)	337, 531, 589, 1043, 1062, 1087
Bse1I	ACTGG	4 cut(s)	75, 583, 650, 1159
Bse8I	GATNNNNATC	1 cut(s)	1089
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	2 cut(s)	851, 1044
BseDI	CCNNGG	2 cut(s)	344, 549
BseGI	GGATG	5 cut(s)	167, 478, 665, 988, 1117
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	6 cut(s)	337, 531, 589, 1043, 1062, 1087
BseMII	CTCAG	4 cut(s)	324, 438, 496, 663
BseNI	ACTGG	4 cut(s)	75, 583, 650, 1159
BseRI	GAGGAG	5 cut(s)	118, 121, 146, 417, 476
BseXI	GCAGC	4 cut(s)	704, 759, 762, 882
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	5 cut(s)	19, 326, 440, 542, 630
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	8 cut(s)	264, 338, 346, 538, 543, 608, 626, 884
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	6 cut(s)	337, 531, 589, 1043, 1062, 1087
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	5 cut(s)	19, 326, 440, 542, 630
Bsp1286I	GDGCHC	3 cut(s)	345, 492, 1148
Bsp13I	TCCGGA	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	4 cut(s)	738, 904, 1090, 1098
BspACI	CCGC	9 cut(s)	244, 289, 374, 399, 437, 560, 593, 1025, 1148
BspANI	GGCC	5 cut(s)	19, 326, 440, 542, 630
BspCNI	CTCAG	4 cut(s)	325, 439, 495, 664
BspEI	TCCGGA	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	8 cut(s)	342, 369, 523, 536, 547, 612, 1035, 1145
BspMI	ACCTGC	2 cut(s)	686, 983
BspOI	GCTAGC	1 cut(s)	822
BspPI	GGATC	2 cut(s)	1098, 1106
BspTI	CTTAAG	1 cut(s)	1028
BsrBI	CCGCTC	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	4 cut(s)	75, 583, 650, 1159
BssECI	CCNNGG	2 cut(s)	344, 549
BssMI	GATC	4 cut(s)	738, 904, 1090, 1098
Bst2UI	CCWGG	2 cut(s)	851, 1044
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	1028
BstAUI	TGTACA	1 cut(s)	657
BstC8I	GCNNGC	3 cut(s)	820, 1131, 1148
BstDEI	CTNAG	4 cut(s)	333, 447, 482, 672
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	5 cut(s)	167, 478, 665, 988, 1117
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	741, 907, 1093, 1101
BstMBI	GATC	4 cut(s)	738, 904, 1090, 1098
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	2 cut(s)	851, 1044
BstSCI	CCNGG	7 cut(s)	344, 537, 542, 606, 625, 849, 1042
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	704, 759, 762, 882
BstX2I	RGATCY	2 cut(s)	1090, 1098
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstYI	RGATCY	2 cut(s)	1090, 1098
BsuRI	GGCC	5 cut(s)	19, 326, 440, 542, 630
BtsCI	GGATG	5 cut(s)	167, 478, 665, 988, 1117
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	4 cut(s)	68, 490, 660, 814
BveI	ACCTGC	2 cut(s)	686, 983
Cac8I	GCNNGC	3 cut(s)	820, 1131, 1148
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	8 cut(s)	348, 367, 522, 540, 546, 628, 1005, 1053
Csp6I	GTAC	1 cut(s)	658
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	4 cut(s)	333, 447, 482, 672
DpnI	GATC	4 cut(s)	740, 906, 1092, 1100
DpnII	GATC	4 cut(s)	738, 904, 1090, 1098
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	2 cut(s)	233, 414
Ecl136II	GAGCTC	1 cut(s)	490
Eco24I	GRGCYC	3 cut(s)	345, 492, 1148
Eco47I	GGWCC	6 cut(s)	348, 367, 522, 546, 1005, 1053
Eco53kI	GAGCTC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoRI	GAATTC	2 cut(s)	527, 857
EcoRII	CCWGG	2 cut(s)	849, 1042
EcoT38I	GRGCYC	3 cut(s)	345, 492, 1148
FaiI	YATR	4 cut(s)	25, 519, 1078, 1156
FaqI	GGGAC	1 cut(s)	535
FauI	CCCGC	1 cut(s)	1155
Fnu4HI	GCNGC	6 cut(s)	438, 594, 693, 748, 751, 871
FokI	GGATG	5 cut(s)	154, 485, 652, 995, 1124
FriOI	GRGCYC	3 cut(s)	345, 492, 1148
Fsp4HI	GCNGC	6 cut(s)	438, 594, 693, 748, 751, 871
FspBI	CTAG	4 cut(s)	795, 819, 1002, 1134
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	6 cut(s)	438, 594, 693, 748, 751, 871
HaeIII	GGCC	5 cut(s)	19, 326, 440, 542, 630
HapII	CCGG	8 cut(s)	264, 338, 346, 538, 543, 608, 626, 884
HhaI	GCGC	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	6 cut(s)	35, 106, 362, 598, 622, 846
HpaII	CCGG	8 cut(s)	264, 338, 346, 538, 543, 608, 626, 884
HphI	GGTGA	3 cut(s)	109, 565, 1058
Hpy166II	GTNNAC	3 cut(s)	508, 660, 1049
Hpy188I	TCNGA	8 cut(s)	40, 105, 361, 367, 550, 615, 673, 1098
Hpy188III	TCNNGA	5 cut(s)	493, 635, 843, 884, 914
Hpy8I	GTNNAC	3 cut(s)	508, 660, 1049
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	6 cut(s)	316, 460, 641, 709, 860, 1133
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	665, 812, 979, 992
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	4 cut(s)	333, 447, 482, 672
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	883
Kzo9I	GATC	4 cut(s)	738, 904, 1090, 1098
LmnI	GCTCC	3 cut(s)	340, 616, 1143
Lsp1109I	GCAGC	4 cut(s)	704, 759, 762, 882
LweI	GCATC	3 cut(s)	674, 821, 973
MaeI	CTAG	4 cut(s)	795, 819, 1002, 1134
MalI	GATC	4 cut(s)	740, 906, 1092, 1100
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	4 cut(s)	738, 904, 1090, 1098
MboII	GAAGA	4 cut(s)	106, 199, 310, 1085
MflI	RGATCY	2 cut(s)	1090, 1098
MhlI	GDGCHC	3 cut(s)	345, 492, 1148
MluCI	AATT	4 cut(s)	160, 527, 857, 943
MmeI	TCCRAC	3 cut(s)	203, 567, 638
MroI	TCCGGA	1 cut(s)	883
MseI	TTAA	2 cut(s)	891, 1029
MspCI	CTTAAG	1 cut(s)	1028
MspI	CCGG	8 cut(s)	264, 338, 346, 538, 543, 608, 626, 884
MspR9I	CCNGG	7 cut(s)	346, 539, 544, 608, 627, 851, 1044
MvaI	CCWGG	2 cut(s)	851, 1044
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	487
NciI	CCSGG	5 cut(s)	346, 539, 544, 608, 627
NdeII	GATC	4 cut(s)	738, 904, 1090, 1098
NheI	GCTAGC	1 cut(s)	818
NlaIV	GGNNCC	8 cut(s)	342, 369, 523, 536, 547, 612, 1035, 1145
PaqCI	CACCTGC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	6 cut(s)	35, 106, 362, 598, 622, 846
PflFI	GACNNNGTC	1 cut(s)	1057
PflMI	CCANNNNNTGG	1 cut(s)	1062
PkrI	GCNGC	6 cut(s)	439, 595, 694, 749, 752, 872
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	849, 1042
PspGI	CCWGG	2 cut(s)	849, 1042
PspN4I	GGNNCC	8 cut(s)	342, 369, 523, 536, 547, 612, 1035, 1145
PspPI	GGNCC	8 cut(s)	348, 367, 522, 540, 546, 628, 1005, 1053
PsuI	RGATCY	2 cut(s)	1090, 1098
PsyI	GACNNNGTC	1 cut(s)	1057
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	891, 1029
SatI	GCNGC	6 cut(s)	438, 594, 693, 748, 751, 871
Sau3AI	GATC	4 cut(s)	738, 904, 1090, 1098
Sau96I	GGNCC	8 cut(s)	348, 367, 522, 540, 546, 628, 1005, 1053
ScrFI	CCNGG	7 cut(s)	346, 539, 544, 608, 627, 851, 1044
SduI	GDGCHC	3 cut(s)	345, 492, 1148
SfaNI	GCATC	3 cut(s)	674, 821, 973
SinI	GGWCC	6 cut(s)	348, 367, 522, 546, 1005, 1053
SmlI	CTYRAG	4 cut(s)	491, 912, 1028, 1102
SmoI	CTYRAG	4 cut(s)	491, 912, 1028, 1102
Sse9I	AATT	4 cut(s)	160, 527, 857, 943
SsiI	CCGC	9 cut(s)	244, 289, 374, 399, 437, 560, 593, 1025, 1148
SspMI	CTAG	4 cut(s)	795, 819, 1002, 1134
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	7 cut(s)	344, 537, 542, 606, 625, 849, 1042
TaaI	ACNGT	1 cut(s)	514
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	4 cut(s)	160, 527, 857, 943
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	2 cut(s)	440, 596
TfiI	GAWTC	6 cut(s)	35, 106, 362, 598, 622, 846
Tru1I	TTAA	2 cut(s)	891, 1029
Tru9I	TTAA	2 cut(s)	891, 1029
TscAI	CASTG	4 cut(s)	75, 490, 667, 814
TseI	GCWGC	4 cut(s)	692, 747, 750, 870
TspGWI	ACGGA	3 cut(s)	632, 943, 1066
TspRI	CASTG	4 cut(s)	75, 490, 667, 814
Tth111I	GACNNNGTC	1 cut(s)	1057
Van91I	CCANNNNNTGG	1 cut(s)	1062
Vha464I	CTTAAG	1 cut(s)	1028
VpaK11BI	GGWCC	6 cut(s)	348, 367, 522, 546, 1005, 1053
XagI	CCTNNNNNAGG	1 cut(s)	1085
XapI	RAATTY	2 cut(s)	527, 857
XspI	CTAG	4 cut(s)	795, 819, 1002, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.