Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Reverse (-)

14193333 .. 14197151

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22910.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTCTCAGTCTCGTCTTCACCTCACGCTCTTCACTCTTCTGCAAACCCCTCTCATTTCCAGCCCCAAAACCCCAATCCCTCTCCCTACTCTCTCTCTCCTCCCCAAACCCTAACCCTAACCCTAACCGCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGACGGCGACCGTCCCTCCAAAATCACCGACGAGTGGGGCGAGTCCGCCGATCCCGCGACGGAGCCTGAGCCCACAATCTCCGAGTCTGACCCTCCGGTGAACGAGGACGAGTGGGGAGGAGGTGATGAGTACGTTGAAATCGGGAATGGAACTCCGGCGAAAGCTGAGGCTGAGAGCGCCGTGGAGGTGGAGGAGGTGGATTCTAAGCTCACTGAGCTGAAGAGGTGCTTGGTGGATACGCTTTATGGGACTGAGTTGGGTTTTCGGGCCGGGTCGGAGGTGAGAGCTGAAGTGGTGGAGCTGGTTAATCAGTTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAATCCGGGGCTGCTTGATGGCAACTGGGTTTTACTGTATACTGCATCCTCAGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACACCTTTTTTGAAAGTCGATAAGATCAACCAATCAATTGACACCAGCAGTCTGACAATTTTGAACTCTATCACATTGTCCGGCCCATTTGCCACTTTCTCTTTCAGTGCATCGGCTAGCTTTGAAGTTAGAAGTCCTTCAAGAATCCAGTTTACTATCAATATATTCAGGTTCAATTCAAGGAAGGTACCTTTCAGCCACCAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

269

Amino Acids

28.95

Weight (kDa)

4.61

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	128 - 343	4e-72	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	581
Acc65I	GGTACC	1 cut(s)	784
AccB1I	GGYRCC	2 cut(s)	505, 784
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	554
AccII	CGCG	1 cut(s)	224
AciI	CCGC	6 cut(s)	130, 148, 154, 213, 222, 488
AclWI	GGATC	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	407, 477
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	2 cut(s)	299, 786
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	7 cut(s)	305, 610, 661, 722, 738, 772, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	8 cut(s)	136, 332, 376, 385, 455, 469, 571, 717
AluI	AGCT	8 cut(s)	136, 332, 376, 385, 455, 469, 571, 717
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	2 cut(s)	435, 679
ApeKI	GCWGC	2 cut(s)	526, 587
Asp700I	GAANNNNTTC	1 cut(s)	733
Asp718I	GGTACC	1 cut(s)	784
AspLEI	GCGC	2 cut(s)	347, 508
AspS9I	GGNCC	2 cut(s)	435, 680
AsuC2I	CCSGG	2 cut(s)	439, 522
AsuHPI	GGTGA	5 cut(s)	13, 184, 277, 302, 460
AsuNHI	GCTAGC	1 cut(s)	713
BanI	GGYRCC	2 cut(s)	505, 784
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	513, 599
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	2 cut(s)	187, 332
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	439, 522
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	714
BfoI	RGCGCY	2 cut(s)	348, 509
BfuAI	ACCTGC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	489, 527, 588
BlsI	GCNGC	3 cut(s)	490, 528, 589
Bme1390I	CCNGG	2 cut(s)	439, 522
BmgT120I	GGNCC	2 cut(s)	435, 680
BmiI	GGNNCC	3 cut(s)	231, 507, 786
BmrFI	CCNGG	2 cut(s)	439, 522
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	569, 716
BmtI	GCTAGC	1 cut(s)	717
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	2 cut(s)	234, 333
BpuMI	CCSGG	2 cut(s)	439, 522
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	348, 521
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	545, 745
BseDI	CCNNGG	2 cut(s)	348, 521
BseGI	GGATG	1 cut(s)	560
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	7 cut(s)	22, 225, 324, 330, 372, 411, 579
BseNI	ACTGG	2 cut(s)	545, 745
BseRI	GAGGAG	5 cut(s)	91, 130, 148, 300, 374
BseXI	GCAGC	2 cut(s)	513, 599
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	437, 681
BshNI	GGYRCC	2 cut(s)	505, 784
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	6 cut(s)	263, 323, 438, 503, 521, 678
BslFI	GGGAC	2 cut(s)	165, 430
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	165, 430
BsnI	GGCC	2 cut(s)	437, 681
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	217, 621
BspACI	CCGC	6 cut(s)	130, 148, 154, 213, 222, 488
BspANI	GGCC	2 cut(s)	437, 681
BspCNI	CTCAG	7 cut(s)	21, 226, 325, 331, 373, 412, 578
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	231, 507, 786
BspMI	ACCTGC	1 cut(s)	581
BspOI	GCTAGC	1 cut(s)	717
BspPI	GGATC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	37
BspT107I	GGYRCC	2 cut(s)	505, 784
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	545, 745
BssECI	CCNNGG	2 cut(s)	348, 521
BssMI	GATC	2 cut(s)	217, 621
BssNAI	GTATAC	1 cut(s)	555
BssNI	GRCGYC	1 cut(s)	506
Bst1107I	GTATAC	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	179, 552
Bst6I	CTCTTC	3 cut(s)	37, 44, 383
BstACI	GRCGYC	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	134, 715
BstDEI	CTNAG	8 cut(s)	8, 234, 333, 339, 372, 381, 420, 565
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	2 cut(s)	348, 509
BstHHI	GCGC	2 cut(s)	347, 508
BstKTI	GATC	2 cut(s)	220, 624
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	217, 621
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 344, 382
BstSCI	CCNGG	2 cut(s)	437, 520
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	513, 599
BstV2I	GAAGAC	1 cut(s)	10
BstZ17I	GTATAC	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	437, 681
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	378, 709
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	134, 715
CfoI	GCGC	2 cut(s)	347, 508
Cfr13I	GGNCC	2 cut(s)	435, 680
Csp6I	GTAC	2 cut(s)	298, 785
CviQI	GTAC	2 cut(s)	298, 785
DdeI	CTNAG	8 cut(s)	8, 234, 333, 339, 372, 381, 420, 565
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	2 cut(s)	219, 623
DpnII	GATC	2 cut(s)	217, 621
Eam1104I	CTCTTC	3 cut(s)	37, 44, 383
EarI	CTCTTC	3 cut(s)	37, 44, 383
EciI	GGCGGA	2 cut(s)	137, 202
Eco24I	GRGCYC	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	407, 477
EcoT38I	GRGCYC	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
FaiI	YATR	4 cut(s)	414, 555, 761, 805
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	2 cut(s)	165, 430
FauI	CCCGC	2 cut(s)	161, 229
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	3 cut(s)	489, 527, 588
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	489, 527, 588
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	2 cut(s)	346, 507
GluI	GCNGC	3 cut(s)	489, 527, 588
HaeII	RGCGCY	2 cut(s)	348, 509
HaeIII	GGCC	2 cut(s)	437, 681
HapII	CCGG	6 cut(s)	263, 323, 438, 503, 521, 678
HhaI	GCGC	2 cut(s)	347, 508
Hin1I	GRCGYC	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	345, 506
HinP1I	GCGC	2 cut(s)	345, 506
HinfI	GANTC	6 cut(s)	209, 251, 368, 493, 517, 741
HpaII	CCGG	6 cut(s)	263, 323, 438, 503, 521, 678
HphI	GGTGA	5 cut(s)	13, 184, 277, 302, 460
Hpy166II	GTNNAC	3 cut(s)	268, 555, 750
Hpy188I	TCNGA	6 cut(s)	169, 250, 256, 445, 568, 651
Hpy188III	TCNNGA	2 cut(s)	310, 738
Hpy8I	GTNNAC	3 cut(s)	268, 555, 750
Hpy99I	CGWCG	4 cut(s)	173, 200, 229, 514
HpyAV	CCTTC	3 cut(s)	154, 744, 775
HpyCH4III	ACNGT	2 cut(s)	179, 552
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	45, 560, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 344, 382
HpyF3I	CTNAG	8 cut(s)	8, 234, 333, 339, 372, 381, 420, 565
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	506
HspAI	GCGC	2 cut(s)	345, 506
KasI	GGCGCC	1 cut(s)	505
KpnI	GGTACC	1 cut(s)	788
Kzo9I	GATC	2 cut(s)	217, 621
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	161, 229, 466
Lsp1109I	GCAGC	2 cut(s)	513, 599
LweI	GCATC	2 cut(s)	569, 716
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	1 cut(s)	300
MalI	GATC	2 cut(s)	219, 623
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	2 cut(s)	217, 621
MboII	GAAGA	4 cut(s)	10, 24, 31, 400
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	633, 654, 772
Mly113I	GGCGCC	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	218, 260
MmeI	TCCRAC	3 cut(s)	192, 423, 462
MroXI	GAANNNNTTC	1 cut(s)	733
MseI	TTAA	1 cut(s)	474
MspI	CCGG	6 cut(s)	263, 323, 438, 503, 521, 678
MspR9I	CCNGG	2 cut(s)	439, 522
MunI	CAATTG	1 cut(s)	633
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	221, 344, 382
NarI	GGCGCC	1 cut(s)	506
NciI	CCSGG	2 cut(s)	439, 522
NdeII	GATC	2 cut(s)	217, 621
NheI	GCTAGC	1 cut(s)	713
NlaIV	GGNNCC	3 cut(s)	231, 507, 786
PciSI	GCTCTTC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	733
PfeI	GAWTC	4 cut(s)	368, 493, 517, 741
PkrI	GCNGC	3 cut(s)	490, 528, 589
PleI	GAGTC	2 cut(s)	217, 259
PluTI	GGCGCC	1 cut(s)	509
PpsI	GAGTC	2 cut(s)	217, 259
PspN4I	GGNNCC	3 cut(s)	231, 507, 786
PspPI	GGNCC	2 cut(s)	435, 680
RsaI	GTAC	2 cut(s)	299, 786
RsaNI	GTAC	2 cut(s)	298, 785
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	3 cut(s)	489, 527, 588
Sau3AI	GATC	2 cut(s)	217, 621
Sau96I	GGNCC	2 cut(s)	435, 680
SchI	GAGTC	2 cut(s)	218, 260
ScrFI	CCNGG	2 cut(s)	439, 522
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	569, 716
SfoI	GGCGCC	1 cut(s)	507
Sse9I	AATT	3 cut(s)	633, 654, 772
SsiI	CCGC	6 cut(s)	130, 148, 154, 213, 222, 488
SspDI	GGCGCC	1 cut(s)	505
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	2 cut(s)	437, 520
TaaI	ACNGT	2 cut(s)	179, 552
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	633, 654, 772
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	4 cut(s)	368, 493, 517, 741
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	385, 709
TseI	GCWGC	2 cut(s)	526, 587
TspGWI	ACGGA	2 cut(s)	242, 527
TspRI	CASTG	2 cut(s)	385, 709
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	733
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.