RLG00000002988

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011205
Physical Location & Seq
Forward (+)
42735939 .. 42738904
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002988

Sequence Viewer

Length: 1074 bp
ATGGCTCTCAATCTCGTCTTCACCTCACACTCTTCTCCCTTCTCCAAACCCCTCAAACCCCTCACATTTCCAACCCCAAAACCCCAATCCCTCTCACTACTCTCTCTCTCCTCCCCAAACCCTAACCCCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGACGACACCCCCACCGACGGCGACCGTCCGGCGGCGAAAATCACCGACGAGTGGGGCGAGGCGGCCGAGCCGGAGCCGGAGCCCGAGTCGACAATCTCCGAATCGGACCCTCCGGTGAACGAGGACGAGTGGGGAGGAGCTGATGAGGTCGTGGAAATCGGGAATGGAACTCCGGCCAAAGCTGAGGCTGAGAGCACGGAAGAGGTGGAGGAGGTCGATTCTAAGCTCACTGAGCTGAAGAGGTGCTTGGTAGATACGTTCTATGGGACTGAATTGGGCTTTCGGGCCGGGTCGGAGGTGAGAGCGGAAGTGGTGGAGTTGGTTAACCAGTTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAACCCGGGGCTACTTGATGGCAACTGGGTTTTACTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTCGATAAAATTAACCAATCAATTGACACCAGCAGTCAGACAATTCTGAACTCCATCACATTGTCCGGCCCTTTTGCCATTTTCACTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTTGAATTCAAGGAAGGCACCTTTCAGCCACCAGACATAAAGTCAAGCATTGATCTCCCGCAAGATGTGGAAATATTTGGGCAGAGAATCAATTTGTCACCTGTCCAGCAAACTCTCAGTCCTCTGCAGGAGGTTGTTGCGAGTATCTCAAGAACCATCTCTGGTCAGCAATCACTTAAGGTTCCCATTCCAGGTGAGCGGACCCAGTCATGGCTTCTTACTACGTACCTTGATGGCGATCTCCGAATCTCAAGGGGGGATGGTGGTCTCTTTGTTCTTGCAAAAGAAGGGAGTCCTCTCCTTGATCAGTAA

Protein Analysis

358

Amino Acids

38.45

Weight (kDa)

4.37

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 133 - 348 3.9e-71 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35490
fragaria_vesca FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica Prupe.5G029300_v2.0.a1
pyrus_communis pycom06g02090 pycom16g25080
rosa_chinensis RchiOBHm_Chr7g0211641
rosa_laevigata RLG00000002988
rosa_multiflora Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii Rroxscaffold_3G00247650
rosa_rugosa Rorug07G0126400
rosa_samantha Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana Rw7G022160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 520, 779
AccBSI CCGCTC 3 cut(s) 153, 470, 961
AccI GTMKAC 1 cut(s) 254
AciI CCGC 8 cut(s) 145, 151, 197, 227, 470, 503, 821, 961
AcoI YGGCCR 2 cut(s) 228, 339
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 2 cut(s) 569, 989
AfiI CCNNNNNNNGG 6 cut(s) 182, 196, 216, 499, 953, 972
AflII CTTAAG 1 cut(s) 938
AgsI TTSAA 5 cut(s) 625, 737, 753, 767, 772
AhdI GACNNNNNGTC 1 cut(s) 802
AjnI CCWGG 2 cut(s) 759, 952
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 7 cut(s) 133, 305, 347, 391, 400, 586, 732
AluI AGCT 7 cut(s) 133, 305, 347, 391, 400, 586, 732
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 1 cut(s) 1034
Ama87I CYCGRG 2 cut(s) 248, 535
AoxI GGCC 4 cut(s) 228, 339, 450, 694
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 1 cut(s) 767
ArsI GACNNNNNNTTYG 2 cut(s) 865, 897
Asp700I GAANNNNTTC 1 cut(s) 748
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 4 cut(s) 271, 450, 695, 963
AsuC2I CCSGG 3 cut(s) 454, 536, 537
AsuHPI GGTGA 6 cut(s) 13, 199, 292, 475, 852, 968
AsuNHI GCTAGC 1 cut(s) 728
AvaI CYCGRG 2 cut(s) 248, 535
AvaII GGWCC 2 cut(s) 271, 963
BanI GGYRCC 2 cut(s) 520, 779
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 362
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 614
BccI CCATC 5 cut(s) 542, 689, 926, 989, 1016
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 761, 954
BclI TGATCA 1 cut(s) 1066
BcnI CCSGG 3 cut(s) 454, 536, 537
BcoDI GTCTC 1 cut(s) 1034
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 887
BfoI RGCGCY 1 cut(s) 524
BfrI CTTAAG 1 cut(s) 938
BfuAI ACCTGC 1 cut(s) 596
BisI GCNGC 4 cut(s) 198, 228, 504, 603
BlsI GCNGC 4 cut(s) 199, 229, 505, 604
Bme1390I CCNGG 5 cut(s) 454, 536, 537, 761, 954
Bme18I GGWCC 2 cut(s) 271, 963
BmeRI GACNNNNNGTC 1 cut(s) 802
BmeT110I CYCGRG 2 cut(s) 248, 535
BmgT120I GGNCC 4 cut(s) 271, 450, 695, 963
BmiI GGNNCC 7 cut(s) 240, 246, 273, 522, 781, 945, 965
BmrFI CCNGG 5 cut(s) 454, 536, 537, 761, 954
BmrI ACTGGG 2 cut(s) 565, 961
BmsI GCATC 2 cut(s) 584, 731
BmtI GCTAGC 1 cut(s) 732
BmuI ACTGGG 2 cut(s) 565, 961
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 895, 997
BpuMI CCSGG 3 cut(s) 454, 536, 537
BsaAI YACGTR 1 cut(s) 987
BsaBI GATNNNNATC 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 1034
BsaJI CCNNGG 2 cut(s) 535, 536
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 196, 216, 499, 953, 972
Bse1I ACTGG 3 cut(s) 493, 560, 967
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 2 cut(s) 761, 954
BseDI CCNNGG 2 cut(s) 535, 536
BseGI GGATG 1 cut(s) 1027
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 6 cut(s) 182, 196, 216, 499, 953, 972
BseMII CTCAG 5 cut(s) 339, 345, 387, 573, 892
BseNI ACTGG 3 cut(s) 493, 560, 967
BseRI GAGGAG 5 cut(s) 100, 127, 145, 315, 389
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 614
Bsh1285I CGRYCG 2 cut(s) 190, 231
BshFI GGCC 4 cut(s) 230, 341, 452, 696
BshNI GGYRCC 2 cut(s) 520, 779
BsiEI CGRYCG 2 cut(s) 190, 231
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 2 cut(s) 248, 535
BsiSI CCGG 9 cut(s) 194, 236, 242, 278, 338, 453, 518, 536, 693
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 6 cut(s) 182, 196, 216, 499, 953, 972
BsmAI GTCTC 1 cut(s) 1034
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 4 cut(s) 230, 341, 452, 696
Bso31I GGTCTC 1 cut(s) 1034
BsoBI CYCGRG 2 cut(s) 248, 535
Bsp1286I GDGCHC 2 cut(s) 249, 362
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 3 cut(s) 814, 1000, 1066
BspACI CCGC 8 cut(s) 145, 151, 197, 227, 470, 503, 821, 961
BspANI GGCC 4 cut(s) 230, 341, 452, 696
BspCNI CTCAG 5 cut(s) 340, 346, 388, 574, 891
BspLI GGNNCC 7 cut(s) 240, 246, 273, 522, 781, 945, 965
BspMAI CTGCAG 1 cut(s) 891
BspMI ACCTGC 1 cut(s) 596
BspOI GCTAGC 1 cut(s) 732
BspT107I GGYRCC 2 cut(s) 520, 779
BspTI CTTAAG 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 1034
BsrBI CCGCTC 3 cut(s) 153, 470, 961
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 3 cut(s) 493, 560, 967
BssECI CCNNGG 2 cut(s) 535, 536
BssMI GATC 3 cut(s) 814, 1000, 1066
BssNI GRCGYC 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 761, 954
Bst4CI ACNGT 2 cut(s) 191, 567
Bst6I CTCTTC 3 cut(s) 37, 360, 398
BstACI GRCGYC 1 cut(s) 521
BstAFI CTTAAG 1 cut(s) 938
BstAUI TGTACA 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 987
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 6 cut(s) 348, 354, 387, 396, 582, 878
BstF5I GGATG 1 cut(s) 1027
BstH2I RGCGCY 1 cut(s) 524
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 3 cut(s) 817, 1003, 1069
BstMAI GTCTC 1 cut(s) 1034
BstMBI GATC 3 cut(s) 814, 1000, 1066
BstMCI CGRYCG 2 cut(s) 190, 231
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 2 cut(s) 761, 954
BstSCI CCNGG 5 cut(s) 452, 534, 535, 759, 952
BstSFI CTRYAG 1 cut(s) 887
BstSNI TACGTA 1 cut(s) 987
BstV1I GCAGC 1 cut(s) 614
BstV2I GAAGAC 1 cut(s) 10
BstZI CGGCCG 1 cut(s) 228
BsuRI GGCC 4 cut(s) 230, 341, 452, 696
BtsCI GGATG 1 cut(s) 1027
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 393, 570, 724
BveI ACCTGC 1 cut(s) 596
Cac8I GCNNGC 1 cut(s) 730
CfoI GCGC 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 271, 450, 695, 963
Cfr9I CCCGGG 1 cut(s) 535
Csp6I GTAC 2 cut(s) 568, 988
CviAII CATG 1 cut(s) 972
CviQI GTAC 2 cut(s) 568, 988
DdeI CTNAG 6 cut(s) 348, 354, 387, 396, 582, 878
DinI GGCGCC 1 cut(s) 522
DpnI GATC 3 cut(s) 816, 1002, 1068
DpnII GATC 3 cut(s) 814, 1000, 1066
DriI GACNNNNNGTC 1 cut(s) 802
EaeI YGGCCR 2 cut(s) 228, 339
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 37, 360, 398
Eam1105I GACNNNNNGTC 1 cut(s) 802
EarI CTCTTC 3 cut(s) 37, 360, 398
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 228
Eco105I TACGTA 1 cut(s) 987
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 1034
Eco47I GGWCC 2 cut(s) 271, 963
Eco52I CGGCCG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 422
Eco88I CYCGRG 2 cut(s) 248, 535
EcoRI GAATTC 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 759, 952
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 522
EheI GGCGCC 1 cut(s) 522
FaeI CATG 1 cut(s) 975
FaiI YATR 3 cut(s) 429, 800, 973
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 445
FatI CATG 1 cut(s) 971
FauI CCCGC 2 cut(s) 158, 828
FbaI TGATCA 1 cut(s) 1066
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 4 cut(s) 198, 228, 504, 603
FokI GGATG 1 cut(s) 1034
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 198, 228, 504, 603
FspBI CTAG 1 cut(s) 729
GlaI GCGC 1 cut(s) 522
GluI GCNGC 4 cut(s) 198, 228, 504, 603
HaeII RGCGCY 1 cut(s) 524
HaeIII GGCC 4 cut(s) 230, 341, 452, 696
HapII CCGG 9 cut(s) 194, 236, 242, 278, 338, 453, 518, 536, 693
HhaI GCGC 1 cut(s) 523
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 1 cut(s) 975
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HincII GTYRAC 2 cut(s) 255, 490
HindII GTYRAC 2 cut(s) 255, 490
HinfI GANTC 8 cut(s) 251, 266, 383, 508, 756, 849, 1008, 1054
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 9 cut(s) 194, 236, 242, 278, 338, 453, 518, 536, 693
HphI GGTGA 6 cut(s) 13, 199, 292, 475, 852, 968
Hpy166II GTNNAC 4 cut(s) 255, 283, 490, 570
Hpy188I TCNGA 9 cut(s) 166, 265, 271, 460, 583, 666, 675, 743, 1007
Hpy188III TCNNGA 3 cut(s) 325, 753, 912
Hpy8I GTNNAC 4 cut(s) 255, 283, 490, 570
Hpy99I CGWCG 4 cut(s) 170, 185, 215, 529
HpyAV CCTTC 5 cut(s) 49, 151, 759, 770, 1043
HpyCH4III ACNGT 2 cut(s) 191, 567
HpyCH4IV ACGT 2 cut(s) 422, 986
HpyCH4V TGCA 4 cut(s) 575, 722, 889, 1043
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 6 cut(s) 348, 354, 387, 396, 582, 878
HpySE526I ACGT 2 cut(s) 422, 986
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 1 cut(s) 975
HspAI GCGC 1 cut(s) 521
KasI GGCGCC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 1066
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 3 cut(s) 814, 1000, 1066
LmnI GCTCC 4 cut(s) 158, 238, 244, 302
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 2 cut(s) 584, 731
MaeI CTAG 1 cut(s) 729
MaeII ACGT 2 cut(s) 422, 986
MaeIII GTNAC 1 cut(s) 858
MalI GATC 3 cut(s) 816, 1002, 1068
MbiI CCGCTC 3 cut(s) 153, 470, 961
MboI GATC 3 cut(s) 814, 1000, 1066
MboII GAAGA 5 cut(s) 10, 24, 377, 415, 570
MfeI CAATTG 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 249, 362
MluCI AATT 6 cut(s) 437, 636, 648, 669, 767, 853
Mly113I GGCGCC 1 cut(s) 521
MlyI GAGTC 2 cut(s) 260, 1063
MmeI TCCRAC 4 cut(s) 95, 189, 438, 477
MroXI GAANNNNTTC 1 cut(s) 748
MseI TTAA 3 cut(s) 489, 639, 939
MspCI CTTAAG 1 cut(s) 938
MspI CCGG 9 cut(s) 194, 236, 242, 278, 338, 453, 518, 536, 693
MspR9I CCNGG 5 cut(s) 454, 536, 537, 761, 954
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 2 cut(s) 761, 954
MwoI GCNNNNNNNGC 1 cut(s) 397
NarI GGCGCC 1 cut(s) 521
NciI CCSGG 3 cut(s) 454, 536, 537
NdeII GATC 3 cut(s) 814, 1000, 1066
NheI GCTAGC 1 cut(s) 728
NlaIII CATG 1 cut(s) 975
NlaIV GGNNCC 7 cut(s) 240, 246, 273, 522, 781, 945, 965
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 748
PfeI GAWTC 6 cut(s) 266, 383, 508, 756, 849, 1008
PflFI GACNNNGTC 1 cut(s) 967
PkrI GCNGC 4 cut(s) 199, 229, 505, 604
PleI GAGTC 2 cut(s) 259, 1062
PluTI GGCGCC 1 cut(s) 524
PpsI GAGTC 2 cut(s) 259, 1062
Ppu21I YACGTR 1 cut(s) 987
Psp6I CCWGG 2 cut(s) 759, 952
PspGI CCWGG 2 cut(s) 759, 952
PspN4I GGNNCC 7 cut(s) 240, 246, 273, 522, 781, 945, 965
PspPI GGNCC 4 cut(s) 271, 450, 695, 963
PstI CTGCAG 1 cut(s) 891
PsyI GACNNNGTC 1 cut(s) 967
RsaI GTAC 2 cut(s) 569, 989
RsaNI GTAC 2 cut(s) 568, 988
SalI GTCGAC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 489, 639, 939
SatI GCNGC 4 cut(s) 198, 228, 504, 603
Sau3AI GATC 3 cut(s) 814, 1000, 1066
Sau96I GGNCC 4 cut(s) 271, 450, 695, 963
SchI GAGTC 2 cut(s) 260, 1063
ScrFI CCNGG 5 cut(s) 454, 536, 537, 761, 954
SduI GDGCHC 2 cut(s) 249, 362
SfaNI GCATC 2 cut(s) 584, 731
SfcI CTRYAG 1 cut(s) 887
SfoI GGCGCC 1 cut(s) 522
SinI GGWCC 2 cut(s) 271, 963
SmaI CCCGGG 1 cut(s) 537
SmlI CTYRAG 3 cut(s) 910, 938, 1012
SmoI CTYRAG 3 cut(s) 910, 938, 1012
SnaBI TACGTA 1 cut(s) 987
Sse9I AATT 6 cut(s) 437, 636, 648, 669, 767, 853
SsiI CCGC 8 cut(s) 145, 151, 197, 227, 470, 503, 821, 961
SspDI GGCGCC 1 cut(s) 520
SspI AATATT 1 cut(s) 837
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 5 cut(s) 452, 534, 535, 759, 952
TaaI ACNGT 2 cut(s) 191, 567
TaiI ACGT 2 cut(s) 425, 989
TaqI TCGA 3 cut(s) 254, 381, 630
TasI AATT 6 cut(s) 437, 636, 648, 669, 767, 853
TatI WGTACW 1 cut(s) 567
TauI GCSGC 3 cut(s) 200, 230, 506
TfiI GAWTC 6 cut(s) 266, 383, 508, 756, 849, 1008
Tru1I TTAA 3 cut(s) 489, 639, 939
Tru9I TTAA 3 cut(s) 489, 639, 939
TscAI CASTG 3 cut(s) 400, 577, 724
TseFI GTSAC 1 cut(s) 858
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 858
TspGWI ACGGA 2 cut(s) 377, 542
TspMI CCCGGG 1 cut(s) 535
TspRI CASTG 3 cut(s) 400, 577, 724
Tth111I GACNNNGTC 1 cut(s) 967
Vha464I CTTAAG 1 cut(s) 938
VpaK11BI GGWCC 2 cut(s) 271, 963
XapI RAATTY 1 cut(s) 767
XmaI CCCGGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 748
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.