Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003760.1

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Forward (+)

55980 .. 59220

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003760.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgggaagggaaatgaaatttctggagaactttccattccgatgtttgctctcctccttccgcccccgctcctctctctccgacgacacccccaccgacggcgaccgtccggcggcgaaaatcaccgacgagtggggcgaggccgccgagccggagcccgagcccgagtcgacaatctccgaatcggaccctccggtgaacgaggacgagtggggaggagctgatgaggccgtggagttcgggaatggaactccggccaaagctgaggctgagagcacggaagaggtggaggaggtcggttctaagcttactgagctgaagaggtgcttggtagatacgttctatgggactgaattgggctttcgggccgggtcggaggtgagagcggaagtggtggagttggttaaccagttggaggcggcgaatcccactccggcgccgacggagaacccggggctacttgatggcaactgggttttactgtacactgcatcttctgagctgttgccacttctggcagcaggtagcacatctttgttgaaagtcgataaaattaaccaatcaattgacaccagcagtcagacaattctgaactccatcacattgtccggcccttttgccactttctctttcagtgcatctgctaactttgaagtcagaagtccttcaagaatccaggttgaattcaaggaaggcacctttcagccaccggacataaagtcaagcattggtctcccacaagatgtggaaatatttgggcagagaatcaatttgtcacctgtccagcaaactctcagtcctctgcaggaggttgttgcgagtatctcaagaaccatctctggtcagcaatcacttaaggttcccattccaggtgagcggacccagtcttggcttcttactacgtaccttgatggtgatctccgaatctcaaggggggatggtggtctctttgttcttgcaaaagaagggagtcctctccttgatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

329

Amino Acids

35.61

Weight (kDa)

4.32

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	512
AccB1I	GGYRCC	2 cut(s)	436, 695
AccBSI	CCGCTC	3 cut(s)	69, 386, 877
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	7 cut(s)	61, 67, 113, 144, 386, 419, 877
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	17, 683
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	2 cut(s)	485, 905
AfiI	CCNNNNNNNGG	6 cut(s)	98, 112, 132, 415, 869, 888
AflII	CTTAAG	1 cut(s)	854
AgsI	TTSAA	5 cut(s)	541, 653, 669, 683, 688
AhdI	GACNNNNNGTC	1 cut(s)	718
AjnI	CCWGG	2 cut(s)	675, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	5 cut(s)	221, 263, 307, 316, 502
AluI	AGCT	5 cut(s)	221, 263, 307, 316, 502
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	737, 950
Ama87I	CYCGRG	3 cut(s)	158, 164, 451
AoxI	GGCC	5 cut(s)	141, 228, 255, 366, 610
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	2 cut(s)	17, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
Asp700I	GAANNNNTTC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	4 cut(s)	187, 366, 611, 879
AsuC2I	CCSGG	3 cut(s)	370, 452, 453
AsuHPI	GGTGA	6 cut(s)	115, 208, 391, 768, 884, 926
AvaI	CYCGRG	3 cut(s)	158, 164, 451
AvaII	GGWCC	2 cut(s)	187, 879
BanI	GGYRCC	2 cut(s)	436, 695
BanII	GRGCYC	2 cut(s)	159, 165
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	5 cut(s)	458, 605, 842, 905, 932
BceAI	ACGGC	2 cut(s)	115, 215
BciT130I	CCWGG	2 cut(s)	677, 870
BclI	TGATCA	1 cut(s)	982
BcnI	CCSGG	3 cut(s)	370, 452, 453
BcoDI	GTCTC	2 cut(s)	737, 950
BfmI	CTRYAG	1 cut(s)	803
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	512
BisI	GCNGC	4 cut(s)	114, 144, 420, 519
BlsI	GCNGC	4 cut(s)	115, 145, 421, 520
Bme1390I	CCNGG	5 cut(s)	370, 452, 453, 677, 870
Bme18I	GGWCC	2 cut(s)	187, 879
BmeRI	GACNNNNNGTC	1 cut(s)	718
BmeT110I	CYCGRG	3 cut(s)	158, 164, 451
BmgT120I	GGNCC	4 cut(s)	187, 366, 611, 879
BmiI	GGNNCC	6 cut(s)	156, 189, 438, 697, 861, 881
BmrFI	CCNGG	5 cut(s)	370, 452, 453, 677, 870
BmrI	ACTGGG	2 cut(s)	481, 877
BmsI	GCATC	2 cut(s)	500, 647
BmuI	ACTGGG	2 cut(s)	481, 877
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	811, 913
BpuMI	CCSGG	3 cut(s)	370, 452, 453
BsaAI	YACGTR	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	437
BsaI	GGTCTC	2 cut(s)	737, 950
BsaJI	CCNNGG	3 cut(s)	231, 451, 452
BsaWI	WCCGGW	2 cut(s)	193, 709
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 112, 132, 415, 869, 888
Bse1I	ACTGG	3 cut(s)	409, 476, 883
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	2 cut(s)	677, 870
BseDI	CCNNGG	3 cut(s)	231, 451, 452
BseGI	GGATG	1 cut(s)	943
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	6 cut(s)	98, 112, 132, 415, 869, 888
BseMII	CTCAG	5 cut(s)	255, 261, 303, 489, 808
BseNI	ACTGG	3 cut(s)	409, 476, 883
BseRI	GAGGAG	4 cut(s)	43, 61, 231, 305
BseXI	GCAGC	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	143, 230, 257, 368, 612
BshNI	GGYRCC	2 cut(s)	436, 695
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	3 cut(s)	158, 164, 451
BsiSI	CCGG	9 cut(s)	110, 152, 194, 254, 369, 434, 452, 609, 710
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	6 cut(s)	98, 112, 132, 415, 869, 888
BsmAI	GTCTC	2 cut(s)	737, 950
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	143, 230, 257, 368, 612
Bso31I	GGTCTC	2 cut(s)	737, 950
BsoBI	CYCGRG	3 cut(s)	158, 164, 451
Bsp1286I	GDGCHC	3 cut(s)	159, 165, 278
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	916, 982
BspACI	CCGC	7 cut(s)	61, 67, 113, 144, 386, 419, 877
BspANI	GGCC	5 cut(s)	143, 230, 257, 368, 612
BspCNI	CTCAG	5 cut(s)	256, 262, 304, 490, 807
BspLI	GGNNCC	6 cut(s)	156, 189, 438, 697, 861, 881
BspMAI	CTGCAG	1 cut(s)	807
BspMI	ACCTGC	1 cut(s)	512
BspT107I	GGYRCC	2 cut(s)	436, 695
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	2 cut(s)	737, 950
BsrBI	CCGCTC	3 cut(s)	69, 386, 877
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	3 cut(s)	409, 476, 883
BssECI	CCNNGG	3 cut(s)	231, 451, 452
BssMI	GATC	2 cut(s)	916, 982
BssNI	GRCGYC	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	677, 870
Bst4CI	ACNGT	2 cut(s)	107, 483
Bst6I	CTCTTC	2 cut(s)	276, 314
BstACI	GRCGYC	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	854
BstAUI	TGTACA	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	903
BstDEI	CTNAG	6 cut(s)	264, 270, 303, 312, 498, 794
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	943
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	919, 985
BstMAI	GTCTC	2 cut(s)	737, 950
BstMBI	GATC	2 cut(s)	916, 982
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 313
BstNI	CCWGG	2 cut(s)	677, 870
BstSCI	CCNGG	5 cut(s)	368, 450, 451, 675, 868
BstSFI	CTRYAG	1 cut(s)	803
BstSNI	TACGTA	1 cut(s)	903
BstV1I	GCAGC	1 cut(s)	530
BsuRI	GGCC	5 cut(s)	143, 230, 257, 368, 612
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	943
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	486, 640
BveI	ACCTGC	1 cut(s)	512
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	4 cut(s)	187, 366, 611, 879
Cfr9I	CCCGGG	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	484, 904
CviQI	GTAC	2 cut(s)	484, 904
DdeI	CTNAG	6 cut(s)	264, 270, 303, 312, 498, 794
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	2 cut(s)	918, 984
DpnII	GATC	2 cut(s)	916, 982
DriI	GACNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	276, 314
Eam1105I	GACNNNNNGTC	1 cut(s)	718
EarI	CTCTTC	2 cut(s)	276, 314
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	903
Eco24I	GRGCYC	2 cut(s)	159, 165
Eco31I	GGTCTC	2 cut(s)	737, 950
Eco47I	GGWCC	2 cut(s)	187, 879
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	3 cut(s)	158, 164, 451
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	675, 868
EcoT38I	GRGCYC	2 cut(s)	159, 165
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
FaiI	YATR	2 cut(s)	345, 716
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	361
FauI	CCCGC	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	982
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	114, 144, 420, 519
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	2 cut(s)	159, 165
Fsp4HI	GCNGC	4 cut(s)	114, 144, 420, 519
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	4 cut(s)	114, 144, 420, 519
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	5 cut(s)	143, 230, 257, 368, 612
HapII	CCGG	9 cut(s)	110, 152, 194, 254, 369, 434, 452, 609, 710
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	2 cut(s)	171, 406
HindII	GTYRAC	2 cut(s)	171, 406
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	7 cut(s)	167, 182, 424, 672, 765, 924, 970
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	9 cut(s)	110, 152, 194, 254, 369, 434, 452, 609, 710
HphI	GGTGA	6 cut(s)	115, 208, 391, 768, 884, 926
Hpy166II	GTNNAC	4 cut(s)	171, 199, 406, 486
Hpy188III	TCNNGA	4 cut(s)	23, 241, 669, 828
Hpy8I	GTNNAC	4 cut(s)	171, 199, 406, 486
Hpy99I	CGWCG	4 cut(s)	86, 101, 131, 445
HpyAV	CCTTC	4 cut(s)	67, 675, 686, 959
HpyCH4III	ACNGT	2 cut(s)	107, 483
HpyCH4IV	ACGT	2 cut(s)	338, 902
HpyCH4V	TGCA	4 cut(s)	491, 638, 805, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 313
HpyF3I	CTNAG	6 cut(s)	264, 270, 303, 312, 498, 794
HpySE526I	ACGT	2 cut(s)	338, 902
Hsp92I	GRCGYC	1 cut(s)	437
HspAI	GCGC	1 cut(s)	437
KasI	GGCGCC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	982
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	916, 982
LmnI	GCTCC	3 cut(s)	74, 154, 218
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	500, 647
MaeII	ACGT	2 cut(s)	338, 902
MaeIII	GTNAC	1 cut(s)	774
MalI	GATC	2 cut(s)	918, 984
MbiI	CCGCTC	3 cut(s)	69, 386, 877
MboI	GATC	2 cut(s)	916, 982
MboII	GAAGA	3 cut(s)	293, 331, 486
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	3 cut(s)	159, 165, 278
MluCI	AATT	7 cut(s)	17, 353, 552, 564, 585, 683, 769
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	176, 979
MmeI	TCCRAC	3 cut(s)	105, 354, 393
MroXI	GAANNNNTTC	1 cut(s)	664
MseI	TTAA	3 cut(s)	405, 555, 855
MslI	CAYNNNNRTG	1 cut(s)	40
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	9 cut(s)	110, 152, 194, 254, 369, 434, 452, 609, 710
MspR9I	CCNGG	5 cut(s)	370, 452, 453, 677, 870
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	2 cut(s)	677, 870
MwoI	GCNNNNNNNGC	2 cut(s)	227, 313
NarI	GGCGCC	1 cut(s)	437
NciI	CCSGG	3 cut(s)	370, 452, 453
NdeII	GATC	2 cut(s)	916, 982
NlaIV	GGNNCC	6 cut(s)	156, 189, 438, 697, 861, 881
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	774
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	5 cut(s)	182, 424, 672, 765, 924
PflFI	GACNNNGTC	1 cut(s)	883
PkrI	GCNGC	4 cut(s)	115, 145, 421, 520
PleI	GAGTC	2 cut(s)	175, 978
PluTI	GGCGCC	1 cut(s)	440
PpsI	GAGTC	2 cut(s)	175, 978
Ppu21I	YACGTR	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	675, 868
PspGI	CCWGG	2 cut(s)	675, 868
PspN4I	GGNNCC	6 cut(s)	156, 189, 438, 697, 861, 881
PspPI	GGNCC	4 cut(s)	187, 366, 611, 879
PstI	CTGCAG	1 cut(s)	807
PsyI	GACNNNGTC	1 cut(s)	883
RsaI	GTAC	2 cut(s)	485, 905
RsaNI	GTAC	2 cut(s)	484, 904
RseI	CAYNNNNRTG	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	405, 555, 855
SatI	GCNGC	4 cut(s)	114, 144, 420, 519
Sau3AI	GATC	2 cut(s)	916, 982
Sau96I	GGNCC	4 cut(s)	187, 366, 611, 879
SchI	GAGTC	2 cut(s)	176, 979
ScrFI	CCNGG	5 cut(s)	370, 452, 453, 677, 870
SduI	GDGCHC	3 cut(s)	159, 165, 278
SfaNI	GCATC	2 cut(s)	500, 647
SfcI	CTRYAG	1 cut(s)	803
SfoI	GGCGCC	1 cut(s)	438
SinI	GGWCC	2 cut(s)	187, 879
SmaI	CCCGGG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	3 cut(s)	826, 854, 928
SmoI	CTYRAG	3 cut(s)	826, 854, 928
SnaBI	TACGTA	1 cut(s)	903
Sse9I	AATT	7 cut(s)	17, 353, 552, 564, 585, 683, 769
SsiI	CCGC	7 cut(s)	61, 67, 113, 144, 386, 419, 877
SspDI	GGCGCC	1 cut(s)	436
SspI	AATATT	1 cut(s)	753
StyD4I	CCNGG	5 cut(s)	368, 450, 451, 675, 868
TaaI	ACNGT	2 cut(s)	107, 483
TaiI	ACGT	2 cut(s)	341, 905
TaqI	TCGA	2 cut(s)	170, 546
TasI	AATT	7 cut(s)	17, 353, 552, 564, 585, 683, 769
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	3 cut(s)	116, 146, 422
TfiI	GAWTC	5 cut(s)	182, 424, 672, 765, 924
Tru1I	TTAA	3 cut(s)	405, 555, 855
Tru9I	TTAA	3 cut(s)	405, 555, 855
TscAI	CASTG	2 cut(s)	493, 640
TseFI	GTSAC	1 cut(s)	774
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	774
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	2 cut(s)	293, 458
TspMI	CCCGGG	1 cut(s)	451
TspRI	CASTG	2 cut(s)	493, 640
Tth111I	GACNNNGTC	1 cut(s)	883
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	2 cut(s)	187, 879
XapI	RAATTY	2 cut(s)	17, 683
XmaI	CCCGGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.