Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011205

Physical Location & Seq

Genomic Coordinates Forward (+)

26822029 .. 26825095

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTCTCACTCTGATCTTCACCTCAAACTCCTCTCTCCTCTCCAAAACCCTCGTCAATTCCCCATCCTCATTTCCAACCCTTAATTCTCAATCTCTCTCTCTCCTCTCCCCAAACCCTAAACCCAAGCTCCCCTCCCTCCGCCTACGTTCCTCTCTCTCCGACGACACCCCCGCCGATGGCGACCGCCCCACCAATATCACCGACGAGTGGGGCGAGAAGACCGACCCCGAGCCGGAGCCGCTGTCCAAAATCTCCGAATCGGACCCTCCGCAGAACGAGGACGAGTGGGGAGGCGGAGGAGATGAGGTTGTAGAAGTTGGGAATGGAAGTGCAGCCAAATCTGAGGTTGTGATTGAGGAGAAGGTGGACACTAAGCTTACTGAGCTCAAGAGGGGTTTGGTAGACACGGTTTATGGGACTGAATTCGGGTTTCGGGCTGGGTCTGAGGTGAGAGCGGAGGTTATGGAGTTCGTAAGCCAGTTGGAGGCGGCAAATCCCAACCCGGCTCCGACGGAGAATCTGGGCCTCCTTGATGGCAACTGGGTTTTGCTGTACACTGCATCTTCCGAGCTGTTGCCACTTCTGGCAACAGGTAGTACACCTTTTTTGAAGGTAAATAAAATAACCCAAGCGATCAACACAAGCAGCTTGACTATTTTGAACTCCACCACGTTGTCCAGCCCTTTCGCTAGTTTCTCATTCAGTGCATCTGCTAGTTTTGAAGTTAGAAGTCCTTTAAGAATCCAGGTTGAATTCAAGGAAGGCAGCTTTCAGCCTCCAGAGATTAAATCAAGCATTGATCTCCCGCAAGAAGTGGATGTATTTGGGCAGAAAGTCAATTTATCGCCCGTCCAGCAAACCCTCAGTCCTTTGCAGGACGCCGTTGCAGGTATCTCTAGGACTATTTCTGGTCAGCCACCGCTTAAGGTTTCCATTCCAGGTGAGCGGACGAAGTCTTGGCTTGTTATTACATACCTTGATGAGGATCTCCGGATCTCAAGGGGGGATGGTGGTCTTTTTGTGCTTGCTAGAGAAGGGAGCGTGCTTTTATATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

354

Amino Acids

38.03

Weight (kDa)

4.54

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35490
fragaria_vesca	FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica	MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica	Prupe.5G029300_v2.0.a1
pyrus_communis	pycom06g02090 pycom16g25080
rosa_chinensis	RchiOBHm_Chr7g0211641
rosa_laevigata	RLG00000002988
rosa_multiflora	Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247650
rosa_rugosa	Rorug07G0126400
rosa_samantha	Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana	Rw7G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	881
AccBSI	CCGCTC	2 cut(s)	458, 949
AccI	GTMKAC	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	993
AclWI	GGATC	2 cut(s)	996, 1004
AcsI	RAATTY	2 cut(s)	425, 755
AcyI	GRCGYC	1 cut(s)	882
AfaI	GTAC	2 cut(s)	557, 601
AfiI	CCNNNNNNNGG	5 cut(s)	179, 210, 235, 487, 985
AflII	CTTAAG	1 cut(s)	926
AgsI	TTSAA	5 cut(s)	613, 664, 725, 755, 760
AjnI	CCWGG	2 cut(s)	747, 940
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	6 cut(s)	130, 379, 388, 574, 651, 771
AluI	AGCT	6 cut(s)	130, 379, 388, 574, 651, 771
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	996, 1004
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	993
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	3 cut(s)	335, 648, 768
ApoI	RAATTY	2 cut(s)	425, 755
ArsI	GACNNNNNNTTYG	4 cut(s)	39, 71, 853, 885
AspS9I	GGNCC	2 cut(s)	265, 526
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	4 cut(s)	13, 193, 463, 956
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	347, 660, 780
BccI	CCATC	4 cut(s)	73, 173, 530, 1004
BceAI	ACGGC	1 cut(s)	869
BciT130I	CCWGG	2 cut(s)	749, 942
BcnI	CCSGG	1 cut(s)	506
BfaI	CTAG	4 cut(s)	693, 717, 900, 1032
BfrI	CTTAAG	1 cut(s)	926
BfuAI	ACCTGC	1 cut(s)	881
BisI	GCNGC	5 cut(s)	242, 336, 492, 649, 769
BlsI	GCNGC	5 cut(s)	243, 337, 493, 650, 770
Bme1390I	CCNGG	3 cut(s)	506, 749, 942
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	265, 526
BmiI	GGNNCC	3 cut(s)	240, 267, 510
BmrFI	CCNGG	3 cut(s)	506, 749, 942
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	572, 719
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	765
BpuEI	CTTGAG	2 cut(s)	374, 985
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 230, 260, 294, 324
Bsc4I	CCNNNNNNNGG	5 cut(s)	179, 210, 235, 487, 985
Bse1I	ACTGG	2 cut(s)	481, 548
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	993
BseBI	CCWGG	2 cut(s)	749, 942
BseGI	GGATG	3 cut(s)	65, 826, 1015
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	5 cut(s)	179, 210, 235, 487, 985
BseMII	CTCAG	4 cut(s)	336, 375, 438, 880
BseNI	ACTGG	2 cut(s)	481, 548
BseRI	GAGGAG	5 cut(s)	22, 29, 95, 315, 374
BseXI	GCAGC	3 cut(s)	347, 660, 780
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	528
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	236, 506, 994
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	5 cut(s)	179, 210, 235, 487, 985
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	528
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	993
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	5 cut(s)	15, 636, 802, 988, 996
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	4 cut(s)	337, 376, 439, 879
BspEI	TCCGGA	1 cut(s)	993
BspLI	GGNNCC	3 cut(s)	240, 267, 510
BspMI	ACCTGC	1 cut(s)	881
BspPI	GGATC	2 cut(s)	996, 1004
BspTI	CTTAAG	1 cut(s)	926
BsrBI	CCGCTC	2 cut(s)	458, 949
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	481, 548
BssMI	GATC	5 cut(s)	15, 636, 802, 988, 996
BssNI	GRCGYC	1 cut(s)	882
Bst2UI	CCWGG	2 cut(s)	749, 942
Bst4CI	ACNGT	1 cut(s)	412
BstACI	GRCGYC	1 cut(s)	882
BstAFI	CTTAAG	1 cut(s)	926
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	1029, 1046
BstDEI	CTNAG	5 cut(s)	345, 375, 384, 447, 866
BstENI	CCTNNNNNAGG	1 cut(s)	983
BstF5I	GGATG	3 cut(s)	65, 826, 1015
BstKTI	GATC	5 cut(s)	18, 639, 805, 991, 999
BstMBI	GATC	5 cut(s)	15, 636, 802, 988, 996
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 385, 856
BstNI	CCWGG	2 cut(s)	749, 942
BstSCI	CCNGG	3 cut(s)	504, 747, 940
BstV1I	GCAGC	3 cut(s)	347, 660, 780
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	2 cut(s)	988, 996
BstYI	RGATCY	2 cut(s)	988, 996
BsuRI	GGCC	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	65, 826, 1015
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	558, 712
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	2 cut(s)	1029, 1046
Cfr13I	GGNCC	2 cut(s)	265, 526
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	556, 600
CviQI	GTAC	2 cut(s)	556, 600
DdeI	CTNAG	5 cut(s)	345, 375, 384, 447, 866
DpnI	GATC	5 cut(s)	17, 638, 804, 990, 998
DpnII	GATC	5 cut(s)	15, 636, 802, 988, 996
EciI	GGCGGA	2 cut(s)	131, 312
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	983
EcoRI	GAATTC	2 cut(s)	425, 755
EcoRII	CCWGG	2 cut(s)	747, 940
EcoT38I	GRGCYC	1 cut(s)	390
FaiI	YATR	4 cut(s)	417, 467, 976, 1054
FaqI	GGGAC	1 cut(s)	433
FauI	CCCGC	2 cut(s)	181, 816
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	242, 336, 492, 649, 769
FokI	GGATG	3 cut(s)	52, 833, 1022
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	242, 336, 492, 649, 769
FspBI	CTAG	4 cut(s)	693, 717, 900, 1032
GluI	GCNGC	5 cut(s)	242, 336, 492, 649, 769
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	3 cut(s)	236, 506, 994
HgaI	GACGC	1 cut(s)	890
Hin1I	GRCGYC	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	260, 520, 744
HpaII	CCGG	3 cut(s)	236, 506, 994
HphI	GGTGA	4 cut(s)	13, 193, 463, 956
Hpy166II	GTNNAC	4 cut(s)	370, 406, 558, 602
Hpy188I	TCNGA	8 cut(s)	15, 163, 259, 265, 346, 448, 513, 571
Hpy188III	TCNNGA	3 cut(s)	391, 782, 994
Hpy8I	GTNNAC	4 cut(s)	370, 406, 558, 602
Hpy99I	CGWCG	3 cut(s)	167, 209, 517
HpyAV	CCTTC	4 cut(s)	358, 607, 758, 1031
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	148, 674
HpyCH4V	TGCA	5 cut(s)	335, 563, 710, 877, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 385, 856
HpyF3I	CTNAG	5 cut(s)	345, 375, 384, 447, 866
HpySE526I	ACGT	2 cut(s)	148, 674
Hsp92I	GRCGYC	1 cut(s)	882
Kpn2I	TCCGGA	1 cut(s)	993
Kzo9I	GATC	5 cut(s)	15, 636, 802, 988, 996
LmnI	GCTCC	4 cut(s)	135, 238, 514, 1041
Lsp1109I	GCAGC	3 cut(s)	347, 660, 780
LweI	GCATC	2 cut(s)	572, 719
MaeI	CTAG	4 cut(s)	693, 717, 900, 1032
MaeII	ACGT	2 cut(s)	148, 674
MalI	GATC	5 cut(s)	17, 638, 804, 990, 998
MbiI	CCGCTC	2 cut(s)	458, 949
MboI	GATC	5 cut(s)	15, 636, 802, 988, 996
MboII	GAAGA	3 cut(s)	10, 232, 558
MflI	RGATCY	2 cut(s)	988, 996
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	5 cut(s)	58, 85, 425, 755, 841
MmeI	TCCRAC	4 cut(s)	101, 186, 465, 536
MroI	TCCGGA	1 cut(s)	993
MseI	TTAA	4 cut(s)	84, 740, 789, 927
MspA1I	CMGCKG	1 cut(s)	244
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	3 cut(s)	236, 506, 994
MspR9I	CCNGG	3 cut(s)	506, 749, 942
MvaI	CCWGG	2 cut(s)	749, 942
MwoI	GCNNNNNNNGC	3 cut(s)	241, 385, 856
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	5 cut(s)	15, 636, 802, 988, 996
NlaIV	GGNNCC	3 cut(s)	240, 267, 510
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	260, 520, 744
PflFI	GACNNNGTC	1 cut(s)	955
PkrI	GCNGC	5 cut(s)	243, 337, 493, 650, 770
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	747, 940
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	747, 940
PspN4I	GGNNCC	3 cut(s)	240, 267, 510
PspPI	GGNCC	2 cut(s)	265, 526
PsuI	RGATCY	2 cut(s)	988, 996
PsyI	GACNNNGTC	1 cut(s)	955
RsaI	GTAC	2 cut(s)	557, 601
RsaNI	GTAC	2 cut(s)	556, 600
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	84, 740, 789, 927
SatI	GCNGC	5 cut(s)	242, 336, 492, 649, 769
Sau3AI	GATC	5 cut(s)	15, 636, 802, 988, 996
Sau96I	GGNCC	2 cut(s)	265, 526
ScrFI	CCNGG	3 cut(s)	506, 749, 942
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	572, 719
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	3 cut(s)	389, 926, 1000
SmoI	CTYRAG	3 cut(s)	389, 926, 1000
Sse9I	AATT	5 cut(s)	58, 85, 425, 755, 841
SspMI	CTAG	4 cut(s)	693, 717, 900, 1032
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	504, 747, 940
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	151, 677
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	58, 85, 425, 755, 841
TatI	WGTACW	2 cut(s)	555, 599
TauI	GCSGC	2 cut(s)	244, 494
TfiI	GAWTC	3 cut(s)	260, 520, 744
Tru1I	TTAA	4 cut(s)	84, 740, 789, 927
Tru9I	TTAA	4 cut(s)	84, 740, 789, 927
TscAI	CASTG	2 cut(s)	565, 712
TseI	GCWGC	3 cut(s)	335, 648, 768
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	2 cut(s)	565, 712
Tth111I	GACNNNGTC	1 cut(s)	955
Vha464I	CTTAAG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	265
XagI	CCTNNNNNAGG	1 cut(s)	983
XapI	RAATTY	2 cut(s)	425, 755
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	4 cut(s)	693, 717, 900, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.