Rh7CG276200

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011205
Physical Location & Seq
Reverse (-)
27681933 .. 27688060
6128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG276200.1

Sequence Viewer

Length: 759 bp
ATGGCTCTCAATCTCGTCTTCACCTCACACTCTTCTCTCCTCTCCAAACCCCTCACATTTCCAACCCCAAAACCCCAATCCCTCTCACTACTCTCTCTCTCCTCCCCAAACCCTAACCCCAAGCTCTCCTCCTTCCGCCCCCGCTCCTCTCTCTCCGACGACACCCCCACCGACGGCGACCGTCCGGCGGCGAAAATCACCAACGAGTGGGGCGAGGCGGCCGAGCCGGAGCCGGAGCCCGAGTCGACAATCTCCGAATCGGACCCTCCGGTGAACGAGGACGAGTGGGGAGGAGCTGATGAGGCCGTGGAAATCGGGAATGGAACTCCGGCCAAAGCTGAGGCTGAGAGCACGGAAGAGGTGGAGGAGGTCGATTCTAAGCTTACTGAGCTGAAGAGGTGCTTGGTAGATACGTTCTATGGGACTGAATTGGGCTTTCGGGCCGGGTCGGAGGTGAGAGCGGAAGTGGTGGAGTTGGTTAACCAGTTGGAGGCGGCGAATCCCACTCCGGCGCCGACGGAGAACCCGGGGCTACTTGATGGCAACTGGGTTTTACTGTACACTGCATCTTCTGAGCTGTTGCCACTTCTGGCAGCAGGTAGCACATCTTTGTTGAAAGTCGATAAAATTAACCAATCAATTGACACCAGCAGTCAGACAATTCTGAACTCCATCACATTGTCCGGCCCTTTTGCCACTTTCTCTTTCAGTGCATCTGCTAGCTTTGAAGTCAGAAGTCCTTCAAGAATCCAGGTATAA

Protein Analysis

252

Amino Acids

26.86

Weight (kDa)

4.28

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 130 - 252 2.8e-43 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35490
fragaria_vesca FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica Prupe.5G029300_v2.0.a1
pyrus_communis pycom06g02090 pycom16g25080
rosa_chinensis RchiOBHm_Chr7g0211641
rosa_laevigata RLG00000002988
rosa_multiflora Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii Rroxscaffold_3G00247650
rosa_rugosa Rorug07G0126400
rosa_samantha Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana Rw7G022160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 511
AccB7I CCANNNNNTGG 1 cut(s) 207
AccBSI CCGCTC 2 cut(s) 144, 461
AccI GTMKAC 1 cut(s) 245
AciI CCGC 6 cut(s) 136, 142, 188, 218, 461, 494
AcoI YGGCCR 2 cut(s) 219, 330
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 4 cut(s) 173, 187, 207, 490
AgsI TTSAA 3 cut(s) 616, 728, 744
AjnI CCWGG 1 cut(s) 750
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 7 cut(s) 124, 296, 338, 382, 391, 577, 723
AluI AGCT 7 cut(s) 124, 296, 338, 382, 391, 577, 723
Alw21I GWGCWC 1 cut(s) 353
Ama87I CYCGRG 2 cut(s) 239, 526
AoxI GGCC 5 cut(s) 219, 303, 330, 441, 685
ApeKI GCWGC 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 739
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 3 cut(s) 262, 441, 686
AsuC2I CCSGG 3 cut(s) 445, 527, 528
AsuHPI GGTGA 4 cut(s) 13, 190, 283, 466
AsuNHI GCTAGC 1 cut(s) 719
AvaI CYCGRG 2 cut(s) 239, 526
AvaII GGWCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 605
BccI CCATC 2 cut(s) 533, 680
BceAI ACGGC 2 cut(s) 190, 290
BciT130I CCWGG 1 cut(s) 752
BcnI CCSGG 3 cut(s) 445, 527, 528
BfaI CTAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 587
BisI GCNGC 4 cut(s) 189, 219, 495, 594
BlsI GCNGC 4 cut(s) 190, 220, 496, 595
Bme1390I CCNGG 4 cut(s) 445, 527, 528, 752
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 2 cut(s) 239, 526
BmgT120I GGNCC 3 cut(s) 262, 441, 686
BmiI GGNNCC 4 cut(s) 231, 237, 264, 513
BmrFI CCNGG 4 cut(s) 445, 527, 528, 752
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 575, 722
BmtI GCTAGC 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 339
BpuMI CCSGG 3 cut(s) 445, 527, 528
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 306, 526, 527
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 187, 207, 490
Bse1I ACTGG 2 cut(s) 484, 551
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 3 cut(s) 306, 526, 527
BseLI CCNNNNNNNGG 4 cut(s) 173, 187, 207, 490
BseMII CTCAG 4 cut(s) 330, 336, 378, 564
BseNI ACTGG 2 cut(s) 484, 551
BseRI GAGGAG 6 cut(s) 29, 91, 118, 136, 306, 380
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 605
Bsh1285I CGRYCG 2 cut(s) 181, 222
BshFI GGCC 5 cut(s) 221, 305, 332, 443, 687
BshNI GGYRCC 1 cut(s) 511
BsiEI CGRYCG 2 cut(s) 181, 222
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 2 cut(s) 239, 526
BsiSI CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 4 cut(s) 173, 187, 207, 490
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 5 cut(s) 221, 305, 332, 443, 687
BsoBI CYCGRG 2 cut(s) 239, 526
Bsp1286I GDGCHC 2 cut(s) 240, 353
Bsp1407I TGTACA 1 cut(s) 558
BspACI CCGC 6 cut(s) 136, 142, 188, 218, 461, 494
BspANI GGCC 5 cut(s) 221, 305, 332, 443, 687
BspCNI CTCAG 4 cut(s) 331, 337, 379, 565
BspLI GGNNCC 4 cut(s) 231, 237, 264, 513
BspMI ACCTGC 1 cut(s) 587
BspOI GCTAGC 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 511
BsrBI CCGCTC 2 cut(s) 144, 461
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 2 cut(s) 484, 551
BssECI CCNNGG 3 cut(s) 306, 526, 527
BssNI GRCGYC 1 cut(s) 512
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 2 cut(s) 182, 558
Bst6I CTCTTC 3 cut(s) 37, 351, 389
BstACI GRCGYC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 5 cut(s) 339, 345, 378, 387, 573
BstDSI CCRYGG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstMCI CGRYCG 2 cut(s) 181, 222
BstMWI GCNNNNNNNGC 2 cut(s) 302, 388
BstNI CCWGG 1 cut(s) 752
BstSCI CCNGG 4 cut(s) 443, 525, 526, 750
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 10
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 5 cut(s) 221, 305, 332, 443, 687
BtgI CCRYGG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 561, 715
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 721
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 3 cut(s) 262, 441, 686
Cfr9I CCCGGG 1 cut(s) 526
Csp6I GTAC 1 cut(s) 559
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 5 cut(s) 339, 345, 378, 387, 573
DinI GGCGCC 1 cut(s) 513
EaeI YGGCCR 2 cut(s) 219, 330
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 37, 351, 389
EarI CTCTTC 3 cut(s) 37, 351, 389
EciI GGCGGA 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 2 cut(s) 239, 526
EcoRII CCWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 513
EheI GGCGCC 1 cut(s) 513
FaiI YATR 2 cut(s) 420, 757
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 436
FauI CCCGC 1 cut(s) 149
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 4 cut(s) 189, 219, 495, 594
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 189, 219, 495, 594
FspBI CTAG 1 cut(s) 720
GlaI GCGC 1 cut(s) 513
GluI GCNGC 4 cut(s) 189, 219, 495, 594
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 5 cut(s) 221, 305, 332, 443, 687
HapII CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 512
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 2 cut(s) 246, 481
HindII GTYRAC 2 cut(s) 246, 481
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 5 cut(s) 242, 257, 374, 499, 747
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
HphI GGTGA 4 cut(s) 13, 190, 283, 466
Hpy166II GTNNAC 4 cut(s) 246, 274, 481, 561
Hpy188I TCNGA 8 cut(s) 157, 256, 262, 451, 574, 657, 666, 734
Hpy188III TCNNGA 2 cut(s) 316, 744
Hpy8I GTNNAC 4 cut(s) 246, 274, 481, 561
Hpy99I CGWCG 3 cut(s) 161, 176, 520
HpyAV CCTTC 2 cut(s) 142, 750
HpyCH4III ACNGT 2 cut(s) 182, 558
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 2 cut(s) 566, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 388
HpyF3I CTNAG 5 cut(s) 339, 345, 378, 387, 573
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 512
HspAI GCGC 1 cut(s) 512
KasI GGCGCC 1 cut(s) 511
KspAI GTTAAC 1 cut(s) 481
LmnI GCTCC 4 cut(s) 149, 229, 235, 293
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 2 cut(s) 575, 722
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 413
MbiI CCGCTC 2 cut(s) 144, 461
MboII GAAGA 5 cut(s) 10, 24, 368, 406, 561
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 240, 353
MluCI AATT 4 cut(s) 428, 627, 639, 660
Mly113I GGCGCC 1 cut(s) 512
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 4 cut(s) 86, 180, 429, 468
MroXI GAANNNNTTC 1 cut(s) 739
MseI TTAA 2 cut(s) 480, 630
MspI CCGG 9 cut(s) 185, 227, 233, 269, 329, 444, 509, 527, 684
MspR9I CCNGG 4 cut(s) 445, 527, 528, 752
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 752
MwoI GCNNNNNNNGC 2 cut(s) 302, 388
NarI GGCGCC 1 cut(s) 512
NciI CCSGG 3 cut(s) 445, 527, 528
NheI GCTAGC 1 cut(s) 719
NlaIV GGNNCC 4 cut(s) 231, 237, 264, 513
NmeAIII GCCGAG 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 4 cut(s) 257, 374, 499, 747
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 4 cut(s) 190, 220, 496, 595
PleI GAGTC 1 cut(s) 250
PluTI GGCGCC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 4 cut(s) 231, 237, 264, 513
PspPI GGNCC 3 cut(s) 262, 441, 686
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
SalI GTCGAC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 480, 630
SatI GCNGC 4 cut(s) 189, 219, 495, 594
Sau96I GGNCC 3 cut(s) 262, 441, 686
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 4 cut(s) 445, 527, 528, 752
SduI GDGCHC 2 cut(s) 240, 353
SfaNI GCATC 2 cut(s) 575, 722
SfoI GGCGCC 1 cut(s) 513
SinI GGWCC 1 cut(s) 262
SmaI CCCGGG 1 cut(s) 528
Sse9I AATT 4 cut(s) 428, 627, 639, 660
SsiI CCGC 6 cut(s) 136, 142, 188, 218, 461, 494
SspDI GGCGCC 1 cut(s) 511
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 4 cut(s) 443, 525, 526, 750
TaaI ACNGT 2 cut(s) 182, 558
TaiI ACGT 1 cut(s) 416
TaqI TCGA 3 cut(s) 245, 372, 621
TasI AATT 4 cut(s) 428, 627, 639, 660
TatI WGTACW 1 cut(s) 558
TauI GCSGC 3 cut(s) 191, 221, 497
TfiI GAWTC 4 cut(s) 257, 374, 499, 747
Tru1I TTAA 2 cut(s) 480, 630
Tru9I TTAA 2 cut(s) 480, 630
TscAI CASTG 2 cut(s) 568, 715
TseI GCWGC 1 cut(s) 593
TspGWI ACGGA 2 cut(s) 368, 533
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 2 cut(s) 568, 715
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 262
XmaI CCCGGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.